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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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VINNOVA Resource Report Resource Website 1+ mentions |
VINNOVA (RRID:SCR_011765) | VINNOVA | institution | Swedish agency whose mission is to promote sustainable growth by improving the conditions for innovation, as well as funding needs-driven research. They promote collaborations between companies, universities, research institutes and the public sector by stimulating a greater use of research, by making long-term investment in strong research and innovation environments and by developing catalytic meeting places. Their activities also focus on strengthening international cooperation. | Wikidata: Q4355568, ISNI: 0000 0001 2237 0481, nlx_158538, grid.453022.2, Crossref funder ID: 501100001858 | https://ror.org/01kd5m353 | SCR_011765 | VINNOVA Sweden''s Innovation Agency | 2026-08-21 12:39:19 | 7 | |||||||||
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Walter and Eliza Hall Institute of Medical Research; Victoria; Australia Resource Report Resource Website 10+ mentions |
Walter and Eliza Hall Institute of Medical Research; Victoria; Australia (RRID:SCR_011773) | WEHI | institution | Medical research institute in Australia that researches and develops treatments for cancer, infectious diseases and chronic inflammatory diseases. |
is parent organization of: affylmGUI is parent organization of: Socrates is parent organization of: GOstat is parent organization of: LINKDATAGEN |
Wikidata: Q7966487, nlx_157660, grid.1042.7 | https://ror.org/01b6kha49 | SCR_011773 | Walter and Eliza Hall Institute of Medical Research, Walter and Eliza Hall Institute | 2026-08-21 12:39:19 | 10 | ||||||||
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University of Wyoming School of Pharmacy Resource Report Resource Website |
University of Wyoming School of Pharmacy (RRID:SCR_011750) | data or information resource, graduate program resource, institution, organization portal, portal, university | The University of Wyoming School of Pharmacy was founded in 1946. The school aims to help improve the quality of health care in Wyoming by graduating students who can provide primary pharmaceutical care in a rural and frontier environment, as well as in cities. Students receive a strong background in the pharmaceutical sciences on which to build clinical expertise. Complementing this, early in the curriculum students are exposed to pharmacy practice environments and seminars focusing on contemporary issues. Throughout the curriculum, faculty members integrate the teaching and application of critical-thinking skills, decision-making skills, and professional communication techniques as applied to pharmacy practice. This culminates in the final year with a series of rotations in diverse settings throughout Wyoming, Colorado, and beyond. | has parent organization: University of Wyoming; Wyoming; USA | nlx_33006 | SCR_011750 | UWYO School of Pharmacy | 2026-08-21 12:39:46 | 0 | ||||||||||
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CANGS Resource Report Resource Website 1+ mentions |
CANGS (RRID:SCR_011837) | CANGS | data analysis software, data processing software, software application, software resource | A user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies. | windows, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite |
PMID:20180949 | biotools:cangs, OMICS_01084 | https://bio.tools/cangs | SCR_011837 | 2026-08-21 12:39:47 | 1 | |||||||
|
University of Texas at Austin College of Pharmacy Resource Report Resource Website |
University of Texas at Austin College of Pharmacy (RRID:SCR_011717) | data or information resource, graduate program resource, institution, organization portal, portal, postdoctoral program resource, training resource, university | The College of Pharmacy at The University of Texas at Austin is one of the premier institutions of pharmaceutical education and research in the country. Our college is a national leader in pharmacy education with a curriculum designed to prepare pharmacy graduates for lifelong learning and leadership capabilities as drug therapy managers in the nation's healthcare system. The pharmacist of the 21st century has significant responsibility for managing drug therapy, counseling patients on proper use of medications, and monitoring drug therapy outcomes. | has parent organization: University of Texas at Austin; Texas; USA | nlx_79866 | SCR_011717 | UTA College of Pharmacy | 2026-08-21 12:39:45 | 0 | ||||||||||
|
ConDeTri Resource Report Resource Website 50+ mentions |
ConDeTri (RRID:SCR_011838) | ConDeTri | software resource | Software tool as content dependent read trimmer for Illumina data. Content dependent read trimming software for Illumina/Solexa sequencing data. | Solexa sequencing data, Illumina data, data read trimming, read trimmer, sequencing data, |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:22039460 | Free, Available for download, Freely available | OMICS_01085, biotools:condetri | https://bio.tools/condetri, https://sources.debian.org/src/condetri/, https://github.com/linneas/condetri/ | SCR_011838 | 2026-08-21 12:39:36 | 67 | ||||||
|
Circos Resource Report Resource Website 5000+ mentions |
Circos (RRID:SCR_011798) | Circos | software resource | A software package for visualizing data and information. It visualizes data in a circular layout - this makes Circos ideal for exploring relationships between objects or positions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: JupiterPlot |
DOI:10.1101/gr.092759.109 | biotools:circos, OMICS_00932 | https://bio.tools/circos, https://sources.debian.org/src/circos/ | SCR_011798 | 2026-08-21 12:39:35 | 5669 | |||||||
|
University of Tennessee; Tennessee; USA Resource Report Resource Website 1+ mentions |
University of Tennessee; Tennessee; USA (RRID:SCR_011712) | UT | university | University of Tennessee System is comprised of campuses at Knoxville, Chattanooga, Pulaski and Martin; Health Science Center at Memphis; Space Institute at Tullahoma; and statewide Institute of Agriculture and Institute for Public Service. |
is parent organization of: University of Tennessee Health Science Center; Tennessee; USA is parent organization of: University of Tennessee Knoxville; Tennessee; USA is parent organization of: University of Tennessee KnoxvilleAdvanced Microscopy and Imaging Center AMIC Core Facility is parent organization of: University of Tennessee at Knoxville Genomics Core Facility |
, Crossref Funder ID 100014455, GRID grid.411461.7, nlx_14003, ISNI 0000 0001 2315 1184, Wikidata Q1150105 | https://ror.org/020f3ap87 | SCR_011712 | University of Tennessee | 2026-08-21 12:39:45 | 2 | ||||||||
|
University of the Sciences in Philadelphia College of Pharmacy Resource Report Resource Website |
University of the Sciences in Philadelphia College of Pharmacy (RRID:SCR_011728) | data or information resource, degree granting program, graduate program resource, institution, organization portal, portal, training resource, undergraduate program resource, university | Pharmaceutical education began at Philadelphia College of Pharmacy (PCP), the first such institution in North America. With nearly two centuries of experience in pharmacy and science and thousands of alumni working in the healthcare industry, the world turns to PCP graduates for advice. From undergraduate majors to graduate degrees to our esteemed PharmD program, you can learn where the founders (alumni such as McNeil, Lilly, Rorer, Wyeth, Warner, Burroughs, and Wellcome) of six of the top pharmaceutical companies in the world got their education. Since 1821, they have been preparing professionals in pharmacy practice, science, and health care. There is no better place than PCP to prepare you for a lifelong career in the healthcare industry. | has parent organization: University of Sciences in Philadelphia; Pennsylvania; USA | nlx_16974 | SCR_011728 | PCP College of Pharmacy | 2026-08-21 12:39:35 | 0 | ||||||||||
|
sabre Resource Report Resource Website 100+ mentions |
sabre (RRID:SCR_011843) | sabre | data analysis software, data processing software, software application, software resource | Software tool to demultiplex barcoded reads into separate files. Works on both single-end and paired-end data in fastq format. Used in next generation sequencing to analyze a broad range of data. | demultiplex, bardcode, separate, fastq, format, data, next, generation, sequencing, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:sabre, OMICS_01090 | https://bio.tools/sabre | SCR_011843 | Systems Approach to Biomarker Research | 2026-08-21 12:39:47 | 219 | ||||||
|
Prodigal Resource Report Resource Website 1000+ mentions |
Prodigal (RRID:SCR_011936) | Prodigal | simulation software, software application, software resource | Software tool for protein coding gene prediction for prokaryotic genomes. |
is listed by: OMICtools is listed by: Debian is listed by: SoftCite has parent organization: Oak Ridge National Laboratory |
PMID:20211023 | Free, Available for download, Freely available | SCR_021246, OMICS_01493 | https://sources.debian.org/src/prodigal/ | http://prodigal.ornl.gov/ | SCR_011936 | , PROkaryotic DYnamic programming Gene-finding ALgorithm, Prokaryotic Dynamic Programming Genefinding Algorithm | 2026-08-21 12:39:36 | 3398 | |||||
|
Oases Resource Report Resource Website 100+ mentions |
Oases (RRID:SCR_011896) | Oases | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software tool as de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. | bio.tools, transcriptome assembler |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: European Bioinformatics Institute |
DOI:10.1093/bioinformatics/bts094 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01322, biotools:oases | https://bio.tools/oases | https://sources.debian.org/src/oases/ | SCR_011896 | 2026-08-21 12:39:36 | 289 | |||||
|
GeneMark Resource Report Resource Website 500+ mentions |
GeneMark (RRID:SCR_011930) | GeneMark | analysis service resource, data analysis service, production service resource, service resource, software resource | A family of gene prediction programs developed at Georgia Institute of Technology. |
is listed by: OMICtools has parent organization: Georgia Institute of Technology; Georgia; USA |
Academic License Agreement | OMICS_01485 | SCR_011930 | 2026-08-21 12:39:20 | 805 | |||||||||
|
MetAMOS Resource Report Resource Website 10+ mentions |
MetAMOS (RRID:SCR_011914) | MetAMOS | data processing software, software application, software resource, workflow software | A modular and open source metagenomic assembly and analysis pipeline. | microbiome, pipeline, microbiome, workflow software, metagenomic assembly, metagenomic assembly, bio.tools |
is listed by: OMICtools is listed by: Human Microbiome Project is listed by: bio.tools is listed by: Debian is hosted by: GitHub |
Open source, Available for download | OMICS_01426, biotools:metamos | https://github.com/marbl/metAMOS, https://bio.tools/metamos | SCR_011914 | 2026-08-21 12:39:20 | 14 | |||||||
|
GenomeCloud Resource Report Resource Website |
GenomeCloud (RRID:SCR_011886) | GenomeCloud | data repository, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 29, 2019. A cloud platform for next-generation sequencing analysis and storage. Services include: * g-Analysis: Automated genome analysis pipelines at your fingertips * g-Cluster: Easy-of-use and cost-effective genome research infrastructure * g-Storage: A simple way to store, share and protect data * g-Insight: Accurate analysis and interpretation of biological meaning of genome data | genome | is listed by: OMICtools | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01219 | SCR_011886 | 2026-08-21 12:39:48 | 0 | ||||||||
|
KisSplice Resource Report Resource Website 10+ mentions |
KisSplice (RRID:SCR_011893) | KisSplice | data analysis software, data processing software, software application, software resource | Software tool that enables analysis of RNA-seq data with or without reference genome. Local transcriptome assembler for SNPs, indels and AS events. | RNA-seq data analysis, with reference genome, without reference genome, local transcriptome assembler, SNPs, indels, AS events., bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:10.1186/1471-2105-13-S6-S5 | Free, Available for download, Freely available | biotools:KisSplice, OMICS_01321 | https://bio.tools/KisSplice, https://sources.debian.org/src/kissplice/ | SCR_011893 | 2026-08-21 12:39:20 | 21 | ||||||
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ECHO Resource Report Resource Website 100+ mentions |
ECHO (RRID:SCR_011851) | ECHO | algorithm resource, data analysis software, data processing software, sequence analysis software, software application, software resource | Error correction algorithm designed for short-reads from next-generation sequencing platforms such as Illumina''s Genome Analyzer II. | error correction, rnaseq, rna sequence, short-read, next-generation sequencing, ngs, illumina, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:21482625 DOI:10.1101/gr.111351.110 |
Free, Available for download | biotools:echo, OMICS_01102 | https://bio.tools/echo, https://sources.debian.org/src/uc-echo/ | SCR_011851 | ECHO: A reference-free short-read error correction algorithm | 2026-08-21 12:39:36 | 312 | |||||
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CaMPDB Resource Report Resource Website 1+ mentions |
CaMPDB (RRID:SCR_011976) | CaMPDB | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Calpain cleavage prediction using multiple kernel learning. | is listed by: OMICtools | PMID:21559271 | OMICS_01669 | SCR_011976 | Calpain for Modulatory Proteolysis Database | 2026-08-21 12:39:21 | 7 | ||||||||
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NGS Leaders Resource Report Resource Website |
NGS Leaders (RRID:SCR_011982) | NGS Leaders | community building portal, data or information resource, portal | A community created to advance the use and value of next-generation sequencing through knowledge sharing. | is listed by: OMICtools | OMICS_01707 | SCR_011982 | 2026-08-21 12:39:49 | 0 | ||||||||||
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Stack Overflow Resource Report Resource Website 10+ mentions |
Stack Overflow (RRID:SCR_011984) | Stack Overflow | community building portal, data or information resource, portal | A question and answer site for professional and enthusiast programmers. | programmer | is listed by: OMICtools | Free | OMICS_01711 | SCR_011984 | 2026-08-21 12:39:37 | 23 |
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