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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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AutoPilot project Resource Report Resource Website 1+ mentions |
AutoPilot project (RRID:SCR_021448) | data or information resource, portal, project portal | Project related to behavioral experiments.Provides software Python framework for running behavioral experiments designed by University of Oregon scientists. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot has parent organization: University of Oregon; Oregon; USA |
DOI:10.1101/807693 | Free, Freely available | SCR_021448 | AutoPilot | 2026-08-21 12:41:57 | 1 | ||||||||
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Bonsai project Resource Report Resource Website |
Bonsai project (RRID:SCR_021443) | data or information resource, portal, project portal | Project related to composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards. Provides open source software tool as visual language for reactive programming. | Reactive programming visual language, composing reactive data streams, composing asynchronous data streams, video cameras data, microphones data, electrophysiology systems data, data acquisition boards, OpenBehavior |
is listed by: OpenBehavior is related to: Bonsai |
DOI:10.3389/fninf.2015.00007 | Free, Freely available | SCR_021443 | Bonsai | 2026-08-21 12:41:56 | 0 | ||||||||
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ENCODE Transcription Factor and Histone ChIP-Seq processing pipeline Resource Report Resource Website 50+ mentions |
ENCODE Transcription Factor and Histone ChIP-Seq processing pipeline (RRID:SCR_021323) | data processing software, software application, software resource, software toolkit | Software tool as ChIP-seq pipeline for processing ChIP-seq reads, aligning to reference genome, peak calling, and IDR analysis of replicate data according to ENCODE standards. | ChIP-seq pipeline, processing ChIP-seq reads, aligning to reference genome, peak calling, IDR analysis, replicate data, ENCODE standards | PMID:22955991 | Free, Available for download, Freely available | SCR_021323 | 2026-08-21 12:42:06 | 97 | ||||||||||
|
DeepBehavior project Resource Report Resource Website |
DeepBehavior project (RRID:SCR_021387) | data or information resource, portal, project portal | Project related to behavior tracking and analysis. Provides deep learning toolbox that automates taking high speed quality video to track behavior in rodents and humans. | Track behavior, analyze and track behavior, rodent, human, automated analysis, imaging data, OpenBehavior |
is listed by: OpenBehavior is related to: DeepBehavior |
DOI:10.3389/fnsys.2019.00020 | Free, Freely available | SCR_021387 | DeepBehavior | 2026-08-21 12:41:55 | 0 | ||||||||
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Worm Behavior Platform project Resource Report Resource Website |
Worm Behavior Platform project (RRID:SCR_021420) | data or information resource, portal, project portal | Project related to sharing worm tracking data and analysis routines.Open access repository for storing, accessing, filtering data and analysis. | Worm behavior data analysis, worm behavior data sharing, worm behavior data, Caenorhabditis elegans behavioral data, Worm tracker Commons Object Notation, OpenBehavior |
is listed by: OpenBehavior is related to: Worm Behavior Platform |
DOI:10.1038/s41592-018-0112-1 | Free, Freely available | SCR_021420 | Worm Behavior Platform | 2026-08-21 12:41:55 | 0 | ||||||||
|
SLEAP, LEAP and MotionMapper project Resource Report Resource Website |
SLEAP, LEAP and MotionMapper project (RRID:SCR_021383) | data or information resource, portal, project portal | Collection of tools to do video analysis in behavioral neuroscience applications.Offers open source software tools including SLEAP, LEAP and MotionMapper. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: MotionMapper is related to: Social LEAP is related to: Variational Embedding of Animal Motion is related to: BehaviorDEPOT has parent organization: Princeton University; New Jersey; USA |
Free, Freely available | SCR_021383 | LEAP and MotionMapper, SLEAP | 2026-08-21 12:42:06 | 0 | |||||||||
|
idtracker.ai project Resource Report Resource Website |
idtracker.ai project (RRID:SCR_021417) | data or information resource, portal, project portal | Project related to tracking individual animals in large collective groups.Provides algorithm and software for tracking individuals in large collectives of unmarked animals.Tracks animal identification and tracks when animals touch or cross paths in front of one another. | Python Video Annotator, animal identification tracking, animals touch tracking, tracking animal cross paths, OpenBehavior |
is listed by: OpenBehavior is related to: idtracker.ai |
DOI:10.1038/s41592-018-0295-5 | Free, Freely available | SCR_021417 | idtracker.ai | 2026-08-21 12:41:56 | 0 | ||||||||
|
Calcium ActiVity Explorer project Resource Report Resource Website |
Calcium ActiVity Explorer project (RRID:SCR_021419) | CAVE | data or information resource, portal, project portal | Project related to calcium imaging.Provide open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data. | Head mounted calcium imaging, calcium imaging and behavior, calcium imaging, analyze imaging data, head mounted microscopes, behavioral data, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium ActiVity Explorer |
DOI:10.3389/fnins.2018.00958 | Free, Freely available | SCR_021419 | Calcium ActiVity Explorer | 2026-08-21 12:41:56 | 0 | |||||||
|
OpenRefine Resource Report Resource Website 50+ mentions |
OpenRefine (RRID:SCR_021305) | data processing software, software application, software resource | Open source software Java tool for working with data. Used for loading data, cleaning up data, transforming data from one format into another and extending it with web services and external data. | Wikidata, data wrangling, loading data, cleaning up data, transforming data | is related to: Wikidata | DOI:10.3163/1536-5050.101.3.020 | Free, Available for download, Freely available | Wikidata_Q5583871 | https://www.wikidata.org/wiki/Q5583871, https://github.com/OpenRefine/OpenRefine | SCR_021305 | openrefine, Google Refine | 2026-08-21 12:41:53 | 50 | ||||||
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Hierarchical Data Modeling Framework Resource Report Resource Website 1+ mentions |
Hierarchical Data Modeling Framework (RRID:SCR_021303) | HDMF | data processing software, software application, software resource, software toolkit | Open source software Python package for working with hierarchical data. Provides APIs for specifying data models, reading and writing data to different storage backends, and representing data with Python object.Used for working with standardizing, reading, and writing hierarchical object data. | Hierarchical data, data models, reading data, writing data, unified data format, different storage backends, Python object, data, data standards |
is used by: PyNWB is related to: Neurodata Without Borders is related to: Neurodata Extensions Catalog is related to: HDMF Documentation Utilities is related to: HDMF Common Schema |
DOI:10.1109/BigData47090.2019.9005648 | Free, Available for download, Freely available | SCR_021303 | 2026-08-21 12:41:53 | 1 | ||||||||
|
ToxTrac project Resource Report Resource Website |
ToxTrac project (RRID:SCR_021424) | data or information resource, portal, project portal | Project related to high speed tracking of animals.Provides software tool for tracking organisms.Can handle one or several animals in one or several environments.Used for fish, insects, rodents, etc. | Tracking organisms, tracking fish, tracking insects, tracking rodents, behavior measurement, freely moving, OpenBehavior |
is listed by: OpenBehavior is related to: ToxTrac |
DOI:10.1111/2041-210x.12874 | Free, Freely available | SCR_021424 | ToxTrac | 2026-08-21 12:42:07 | 0 | ||||||||
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BonZeb project Resource Report Resource Website |
BonZeb project (RRID:SCR_021388) | data or information resource, portal, project portal | Portal provides tools for investigating visuomotor integration specific to high speed kinematic tracking in small model organisms in closed loop experiments. University of Toronto scientists developed suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed-loop experiments. BonZeb modules can also be used in an open-loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data. | Tacking and analyzing zebrafish movements, integrating zebrafish movements data with closed loop experiments, zebrafish movements, OpenBehavior |
is listed by: OpenBehavior is related to: BonZeb has parent organization: University of Toronto; Ontario; Canada |
Free, Freely available | SCR_021388 | BonZeb | 2026-08-21 12:41:54 | 0 | |||||||||
|
STROBE Resource Report Resource Website 10+ mentions |
STROBE (RRID:SCR_018788) | data or information resource, portal | Guidelines for strengthening reporting of observational studies in epidemiology. International, collaborative initiative of epidemiologists, methodologists, statisticians, researchers and journal editors involved in developing recommendations on what should be included in accurate and complete report of observational study. Recommendations to cover study designs in cohort, case-control, and cross-sectional studies. | STROBE statement, guidelines, streigthening reporting, observational study, epidemiology, report, study design, cohort, case control, cross sectional study | DOI:10.1016/S0140-6736(07)61602-X | Free, Freely available | SCR_018788 | STROBE statement, Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) | 2026-08-21 12:41:51 | 34 | |||||||||
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NEST Initiative Resource Report Resource Website 1+ mentions |
NEST Initiative (RRID:SCR_020978) | data or information resource, organization portal, portal | Incorporated as non-profit member based organization promoting scientfic collaboration in computational neuroscience.Advances computational neuroscience by pushing limits of large scale simulations of biologically realistic neuronal networks. | Computational neuroscience collaboration, member based organization, large scale simulations, biologically realistic neuronal networks | is parent organization of: NEST Simulator | SCR_020978 | Neural Simulation Technology Initiative | 2026-08-21 12:41:48 | 1 | ||||||||||
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BrainGlobe project Resource Report Resource Website 1+ mentions |
BrainGlobe project (RRID:SCR_021481) | data or information resource, portal, project portal | Project is related to working with atlas data from multiple species on common platform.Provides collection of Python tools for working with atlas data from multiple species on common platform and for morphological analyses in systems neuroscience. | Atlas data from multiple species, atlas data on common platform, morphological analyses, systems neuroscience, OpenBehavior | is listed by: OpenBehavior | Free, Freely available | SCR_021481 | BrainGlobe | 2026-08-21 12:41:58 | 2 | |||||||||
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BarensLab Mini-Atlas Resource Report Resource Website 1+ mentions |
BarensLab Mini-Atlas (RRID:SCR_021115) | atlas, data or information resource, mni atlas, reference atlas | Phenotypic variation of transcriptomic cell types in mouse motor cortex.Repository contains analysis code and preprocessed data.Data includes exonic and intronic gene counts, extracted electrophysiological features, extracted morphological features and z-profiles. Datasets with recorded at room temperature and recorded at physiological temperature. | Phenotypic variation, transcriptomic cell types, mouse motor cortex, morpho-electric phenotypes, mouse primary motor cortex, analysis code, preprocessed data, exonic gene counts, intronic gene counts, extracted electrophysiological features, extracted morphological features, z-profiles, raw data, cellular taxonomy, neuron, morphological reconstruction | is related to: BICCN | DOI:10.1101/2020.10.19.343129v1 | Free, Freely available | SCR_021115 | 2026-08-21 12:42:03 | 6 | |||||||||
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Toolboxes for Spike and LFP Analysis project Resource Report Resource Website |
Toolboxes for Spike and LFP Analysis project (RRID:SCR_021478) | data or information resource, portal, project portal | Portal includes compared several toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, and generalized linear modeling. Discussion about major features of software available for Python and MATLAB including Brainstorm, Chronux, Elephant, FieldTrip, gramm, Spike Viewer, and SPIKY. They include succinct tables for assessing system and program requirements, quality of documentation and support, and data types accepted by each toolbox. | List of compared toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, generalized linear modeling, assessing system and program requirements, quality of documentation and support, data types accepted, OpenBehavior | is listed by: OpenBehavior | DOI:10.3389/fninf.2019.00057 | Free, Freely available | SCR_021478 | Toolboxes for Spike and LFP Analysis | 2026-08-21 12:41:57 | 0 | ||||||||
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Scintillate project Resource Report Resource Website |
Scintillate project (RRID:SCR_021479) | data or information resource, portal, project portal | Project related to time series calcium imaging evaluation and pre-processing. Included open source graphical viewer for time series calcium imaging evaluation and pre-processing is provided by Swedish University scientists . | Image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Freely available | SCR_021479 | Scintillate | 2026-08-21 12:41:58 | 0 | ||||||||
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ULTRA-DD Resource Report Resource Website |
ULTRA-DD (RRID:SCR_018995) | data or information resource, portal, project portal | Project aim is to identify and validate novel targets in auto immune and inflammatory diseases. Used to create and profile target directed chemical and antibody probes in patient cell derived assays, provide biomarker and phenotypic read outs in more disease relevant context. | Novel target identification, auto immune disease, inflammatory disease, profile target, target directed chemical, chemical probe, antibody probe, patient cell derived assay, biomarker, phenotypic read out, drug discovery | Auto immune and inflammatory diseases. | EFPIA companies ; European Union Seventh Framework Programme ; Innovative Medicines Initiative Joint Undertaking |
Free, Freely available | SCR_018995 | Unrestricted Leveraging of Targets for Research Advancement and Drug Discovery | 2026-08-21 12:41:54 | 0 | ||||||||
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Wave Surfer project Resource Report Resource Website |
Wave Surfer project (RRID:SCR_021476) | data or information resource, portal, project portal | Project related to neurophysiology data acquisition and analysis.Included open source software application for neurophysiology data acquisition and analysis is provided by Howard Hughes Medical Institute Janelia Research Campus scientists. Program is based in MatLab, and evolved from earlier open source software package called Ephus. | Neurophysiology data acquisition, neurophysiology data analysis, neurophysiology data, MATLAB, OpenBehavior |
is listed by: OpenBehavior is related to: Wave Surfer |
Free, Freely available | SCR_021476 | Wave Surfer | 2026-08-21 12:41:57 | 0 |
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