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https://www.perkinelmer.com/product/harmony-5-1-office-hh17000012

Software tool designed by PerkinElmer for high content screening systems. Used to quantify complex cellular phenotypes. High content analysis software.

Proper citation: Harmony (RRID:SCR_023543) Copy   

•   Source: SciCrunch Registry
  

https://www.enroll-hd.org

Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments.

Proper citation: Enroll-HD (RRID:SCR_023300) Copy   

•   Source: SciCrunch Registry
  

https://www.fasteris.com/en-us/NGS

Fasteris, the brand of Genesupport SA for all Life Science Services, provides Next Generation Sequencing and Sanger sequencing services.Offers customized approaches and consulting services at each step of your projects.

Proper citation: Fasteris Next Generation Sequencing Services (RRID:SCR_023421) Copy   

•   Source: SciCrunch Registry
  

https://www.gehealthcare.com/products/advanced-visualization/all-applications/volume-viewer

Software tool to provide data 3D visualization and processing. Used for reading and comparing CT, MR, 3D X-ray, PET, and PET/CT datasets.

Proper citation: GE Volume Viewer (RRID:SCR_023417) Copy   

•   Source: SciCrunch Registry
  

https://www.fz-juelich.de/en

One of the largest interdisciplinary research centers in Europe for inspiring science exchange from all over the world. It is member of the Helmholtz Association.

Proper citation: Research Center Jülich; Jülich; Germany (RRID:SCR_023416) Copy   

•   Source: SciCrunch Registry
  

https://www.questionpro.de/

Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions.

Proper citation: QuestionPro (RRID:SCR_023309) Copy   

•   Source: SciCrunch Registry
  

http://quantprime.mpimp-golm.mpg.de

Fully automated tool for primer pair design in small- to large-scale real-time reverse transcription qPCR analyses. It offers design and specificity checking with highly customizable parameters and is available for use with publicly available eukaryotic transcriptomes.

Proper citation: QuantPrime (RRID:SCR_015498) Copy   

•   Source: SciCrunch Registry
  

https://lookerstudio.google.com/

Former name Google Data Studio, is online tool for converting data into customizable informative reports and dashboards introduced by Google on March 15, 2016 as part of enterprise Google Analytics 360 suite. Online service for graphic data visualization.

Proper citation: Google Looker Studio (RRID:SCR_023549) Copy   

•   Source: SciCrunch Registry
  

http://www.vsh.com/products/mflt/index.asp

Modeling software for flow cytometry histograms. Models for cell-tracking dye studies and synchronized cell lines are built right into the software.

Proper citation: ModFit LT (RRID:SCR_016106) Copy   

•   Source: SciCrunch Registry
  

https://github.com/IGGoncalves/PhysiCOOL

Software Python library tailored to perform model calibration studies with PhysiCell. Generalized framework for model Calibration and Optimization Of modeLing projects.

Proper citation: PhysiCOOL (RRID:SCR_023305) Copy   

•   Source: SciCrunch Registry
  

https://github.com/Nanostring-Biostats/GeomxTools/

Software package contains tools for analyzing data from NanoString GeoMx Digital Spatial Profiler. Provides functions to read, quality control and normalize starting from Nanostring DCC and PKC files generated from NanoString GeoMx DSP. Contains definition of NanoStringGeoMxSet class which inherits from Biobase’s ExpressionSet class and NanoStringRCCSet class.

Proper citation: NanoString GeoMx Tools (RRID:SCR_023424) Copy   

•   Source: SciCrunch Registry
  

https://github.com/AIRI-Institute/DeepCT

Software tool can learn complex interconnections of epigenetic features and infer unmeasured data from any available input. Can learn cell type-specific properties, build biologically meaningful vector representations of cell types, and utilize these representations to generate cell type-specific predictions of effects of non-coding variations in human genome.

Proper citation: DeepCT (RRID:SCR_023302) Copy   

•   Source: SciCrunch Registry
  

https://choishingwan.gitlab.io/EraSOR/

Software Python tool for removing bias introduced from having overlapped samples between base GWAS data and target genotype data for Polygenic Risk Score analyses. Used for adjusting inflation in PRS prediction and association statistics in presence of sample overlap or close relatedness between GWAS and target samples.

Proper citation: EraSOR (RRID:SCR_023544) Copy   

•   Source: SciCrunch Registry
  

https://humantumoratlas.org

HTAN is National Cancer Institute funded Cancer Moonshot initiative to construct 3-dimensional atlases of dynamic cellular, morphological, and molecular features of human cancers as they evolve from precancerous lesions to advanced disease.Provides three dimensional atlases of cancer transitions for diverse set of tumor types. Efforts to map healthy organs and previous large-scale cancer genomics approaches focused on bulk sequencing at single point in time. Data portal for Human Tumor Atlas Network. Data available on HTAN Portal is open access. Certain data types with potential for re-identification are available in restricted access through dbGAP.

Proper citation: Human Tumor Atlas Network (RRID:SCR_023364) Copy   

•   Source: SciCrunch Registry
  

https://elicit.org/

Research assistant using language models like GPT-3 to automate parts of researchers’ workflows. Main workflow is Literature Review. If you ask question, Elicit will show relevant papers and summaries of key information about those papers in easy-to-use table.

Proper citation: Elicit (RRID:SCR_023362) Copy   

•   Source: SciCrunch Registry
  

https://www.adobe.com/acrobat/pricing.html?mv=search&mv=search&sdid=QLD1PCTN&ef_id=25c445b483b7165088e721ba69a40b8e%3AG%3As&s_kwcid=AL%213085%2110%2179371125970841%2121216644722

Productivity and collaboration PDF solution, combining Acrobat desktop software, mobile scan app, signature app and Acrobat Reader mobile app enhanced with premium mobile features and premium Document Cloud services.

Proper citation: Adobe Acrobat Pro (RRID:SCR_023361) Copy   

•   Source: SciCrunch Registry
  

http://fairbydesign.nl

Software metadata ingestion platform that helps to improve quality of metadata. Station allows users to record meta-data according to minimum information standards thereby ensuring FAIR scientific data management from the start.

Proper citation: FAIR Data Station (RRID:SCR_023239) Copy   

•   Source: SciCrunch Registry
  

https://github.com/openMetadataInitiative/openMINDS_SANDS

One of the metadata models of openMINDS metadata framework. Composed of modular metadata schemas for spatial anchoring of neuroscience data structures, including brain atlas definitions.

Proper citation: openMINDS SANDS metadata model (RRID:SCR_023498) Copy   

•   Source: SciCrunch Registry
  

http://biobank.charite.de

Integrated healthcare biobank that operates under certified conditions and strict SOPs. Enables biomedical and translational researchers to perform their analyses using high quality biospecimens and data to generate reliable and reproducible research data. Core offers modular biobanking portfolio that can cover workflow from blood collection to storage, including all pre-analytical steps and their documentation. Offers spectrum of additional services ranging from DNA/RNA extraction and virtual microscopy to entire management of sample and data flow for national and international research consortia. Provides secure conventional and automated storage of samples at various temperatures as well as secure data management.

Proper citation: Charite University and Berlin Institute for Health Research Central Biobank Core Facility (RRID:SCR_023495) Copy   

•   Source: SciCrunch Registry
  

https://cell-innovation.nig.ac.jp/maser/Tools/visualization_top_en.html

One stop platform for NGS big data from analysis to visualization. There are about 400 analysis pipelines integrated on Maser. List of all analysis pipelines, including descriptions and approximate execution times, can be found on page for ‘All pipelines’ in the User Guide. loadGffToGe_db for custom genome software loads GFF files of custom genomes to a database for Genome Explorer. It allows the user to browse the results through the GE.

Proper citation: loadGffToGe_db for custom genome (RRID:SCR_015997) Copy   

•   Source: SciCrunch Registry