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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Harmony Resource Report Resource Website 10+ mentions |
Harmony (RRID:SCR_023543) | data analysis software, data processing software, software application, software resource | Software tool designed by PerkinElmer for high content screening systems. Used to quantify complex cellular phenotypes. High content analysis software. | PerkinElmer, high content screening systems, quantify complex cellular phenotypes, | Restricted | SCR_023543 | SciCrunch Registry | Harmony High-Content Imaging and Analysis Software, Harmony 5.0, Harmony 5.1 | 2026-09-26 02:17:29 | 22 | ||||||||||
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Enroll-HD Resource Report Resource Website 10+ mentions |
Enroll-HD (RRID:SCR_023300) | data or information resource, disease-related portal, portal, topical portal | Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments. | Clinical Research, clinical trails, Huntington’s Disease families, therapeutics, effective treatments, | Huntington’s disease | Cure HD Initiative Foundation | Free, Freely available | SCR_023300 | SciCrunch Registry | 2026-09-26 02:17:28 | 13 | |||||||||
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Fasteris Next Generation Sequencing Services Resource Report Resource Website 1+ mentions |
Fasteris Next Generation Sequencing Services (RRID:SCR_023421) | service resource | Fasteris, the brand of Genesupport SA for all Life Science Services, provides Next Generation Sequencing and Sanger sequencing services.Offers customized approaches and consulting services at each step of your projects. | USEDit, ABRF, Life Science Services, Fasteris, Genesupport SA, Next Generation Sequencing service, Sanger sequencing service, |
is listed by: ABRF CoreMarketplace is related to: USEDit |
Restricted | ABRF_1710 | https://coremarketplace.org/?FacilityID=1710&citation=1 | SCR_023421 | SciCrunch Registry | Fasteris NGS Services | 2026-09-26 02:17:28 | 1 | |||||||
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GE Volume Viewer Resource Report Resource Website 1+ mentions |
GE Volume Viewer (RRID:SCR_023417) | data processing software, data visualization software, software application, software resource | Software tool to provide data 3D visualization and processing. Used for reading and comparing CT, MR, 3D X-ray, PET, and PET/CT datasets. | GE Healthcare, 3D image processing, 3D image visualization, 3D image | Restricted | SCR_023417 | SciCrunch Registry | Volume Viewer | 2026-09-26 02:17:28 | 2 | ||||||||||
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Research Center Jülich; Jülich; Germany Resource Report Resource Website 1+ mentions |
Research Center Jülich; Jülich; Germany (RRID:SCR_023416) | institution | One of the largest interdisciplinary research centers in Europe for inspiring science exchange from all over the world. It is member of the Helmholtz Association. | interdisciplinary research center, Europe, science exchange |
is parent organization of: BigBrain is parent organization of: DataLad is parent organization of: Julich-Brain Cytoarchitectonic Atlas |
SCR_023416 | SciCrunch Registry | Jülich Research Institute; Jülich; Germany, Forschungszentrum Jülich, Research Centre Jülich, Research Center Jülich; Jülich; Germany | 2026-09-26 02:17:28 | 1 | ||||||||||
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QuestionPro Resource Report Resource Website 10+ mentions |
QuestionPro (RRID:SCR_023309) | software resource | Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions. | QuestionPro, Inc., design and host questionaires, survey creator, | Restricted | SCR_023309 | SciCrunch Registry | 2026-09-26 02:17:28 | 32 | |||||||||||
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QuantPrime Resource Report Resource Website 100+ mentions |
QuantPrime (RRID:SCR_015498) | software resource, web application | Fully automated tool for primer pair design in small- to large-scale real-time reverse transcription qPCR analyses. It offers design and specificity checking with highly customizable parameters and is available for use with publicly available eukaryotic transcriptomes. | primer design, primer pair design, rt-qpcr, reverse transcription qpcr | is listed by: SoftCite | DOI:10.1186/1471-2105-9-465 | Acknowledgement requested, Available as a web application, Available as a desktop application | SCR_015498 | SciCrunch Registry | 2026-09-26 02:17:26 | 162 | |||||||||
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Google Looker Studio Resource Report Resource Website 1+ mentions |
Google Looker Studio (RRID:SCR_023549) | data access protocol, software resource, web service | Former name Google Data Studio, is online tool for converting data into customizable informative reports and dashboards introduced by Google on March 15, 2016 as part of enterprise Google Analytics 360 suite. Online service for graphic data visualization. | Google Analytics 360 suite, graphic data visualization, converting data, reports and dashboards, data visualization | Free, Freely available | SCR_023549 | SciCrunch Registry | Google Data Studio, , Looker Studio | 2026-09-26 02:17:29 | 2 | ||||||||||
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ModFit LT Resource Report Resource Website 100+ mentions |
ModFit LT (RRID:SCR_016106) | data processing software, data visualization software, software application, software resource | Modeling software for flow cytometry histograms. Models for cell-tracking dye studies and synchronized cell lines are built right into the software. | flow, cytometry, histogram, model, graph, cell, tracking, dye, cell line | is listed by: SoftCite | Commercially available, Available for purchase, Trial available | SCR_016106 | SciCrunch Registry | Verity Software House ModFit LT | 2026-09-26 02:17:27 | 154 | |||||||||
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PhysiCOOL Resource Report Resource Website 1+ mentions |
PhysiCOOL (RRID:SCR_023305) | PhysiCOOL | software library, software resource, software toolkit | Software Python library tailored to perform model calibration studies with PhysiCell. Generalized framework for model Calibration and Optimization Of modeLing projects. | perform model calibration studies, PhysiCell, Calibration and Optimization, modeling projects, | Free, Available for download, Freely available | SCR_023305 | SciCrunch Registry | Physi Calibration and Optimization Of modeLing | 2026-09-26 02:17:28 | 1 | |||||||||
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NanoString GeoMx Tools Resource Report Resource Website 10+ mentions |
NanoString GeoMx Tools (RRID:SCR_023424) | data analysis software, data processing software, software application, software resource | Software package contains tools for analyzing data from NanoString GeoMx Digital Spatial Profiler. Provides functions to read, quality control and normalize starting from Nanostring DCC and PKC files generated from NanoString GeoMx DSP. Contains definition of NanoStringGeoMxSet class which inherits from Biobase’s ExpressionSet class and NanoStringRCCSet class. | NanoString GeoMx Digital Spatial Profiler, Nanostring DCC, PKC files, NanoString GeoMx DSP, Biobase ExpressionSet class, NanoStringRCCSet class, | Free, Available for download, Freely available | https://bioconductor.org/packages/GeomxTools/ | SCR_023424 | SciCrunch Registry | GeoMxTools | 2026-09-26 02:17:28 | 41 | |||||||||
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DeepCT Resource Report Resource Website 1+ mentions |
DeepCT (RRID:SCR_023302) | data analysis software, data processing software, software application, software resource | Software tool can learn complex interconnections of epigenetic features and infer unmeasured data from any available input. Can learn cell type-specific properties, build biologically meaningful vector representations of cell types, and utilize these representations to generate cell type-specific predictions of effects of non-coding variations in human genome. | interconnections of epigenetic features, infer unmeasured data, human genome | DOI:10.1101/2021.12.31.474623 | Free, Available for download, Freely available | SCR_023302 | SciCrunch Registry | 2026-09-26 02:17:28 | 1 | ||||||||||
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EraSOR Resource Report Resource Website |
EraSOR (RRID:SCR_023544) | data analysis software, data processing software, software application, software resource | Software Python tool for removing bias introduced from having overlapped samples between base GWAS data and target genotype data for Polygenic Risk Score analyses. Used for adjusting inflation in PRS prediction and association statistics in presence of sample overlap or close relatedness between GWAS and target samples. | removing bias, overlapped samples, GWAS data, target genotype data, Polygenic Risk Score, PRS prediction and association statistics, | DOI:10.1101/2021.12.10.472164 | Free, Available for download, Freely available | SCR_023544 | SciCrunch Registry | Erase Sample Overlap and Relatedness | 2026-09-26 02:17:29 | 0 | |||||||||
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Human Tumor Atlas Network Resource Report Resource Website 10+ mentions |
Human Tumor Atlas Network (RRID:SCR_023364) | HTAN | atlas, data or information resource, disease-related portal, portal, topical portal | HTAN is National Cancer Institute funded Cancer Moonshot initiative to construct 3-dimensional atlases of dynamic cellular, morphological, and molecular features of human cancers as they evolve from precancerous lesions to advanced disease.Provides three dimensional atlases of cancer transitions for diverse set of tumor types. Efforts to map healthy organs and previous large-scale cancer genomics approaches focused on bulk sequencing at single point in time. Data portal for Human Tumor Atlas Network. Data available on HTAN Portal is open access. Certain data types with potential for re-identification are available in restricted access through dbGAP. | Three dimensional atlases, cancer transitions, diverse set of tumor types, map healthy organs, cancer genomics approaches, bulk sequencing at single point in time, data, precancerous lesions to advanced disease, | cancer | National Cancer Institut Cancer Moonshot Initiative | PMID:32302568 | Free, Freely available | SCR_023364 | SciCrunch Registry | 2026-09-26 02:17:28 | 42 | |||||||
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Elicit Resource Report Resource Website 10+ mentions |
Elicit (RRID:SCR_023362) | software resource, web application | Research assistant using language models like GPT-3 to automate parts of researchers’ workflows. Main workflow is Literature Review. If you ask question, Elicit will show relevant papers and summaries of key information about those papers in easy-to-use table. | Literature Review, automate parts of researchers’ workflows, show relevant papers, summaries of paper key information, | Restricted | SCR_023362 | SciCrunch Registry | Elicit: The AI Research Assistant | 2026-09-26 02:17:28 | 13 | ||||||||||
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Adobe Acrobat Pro Resource Report Resource Website |
Adobe Acrobat Pro (RRID:SCR_023361) | software resource | Productivity and collaboration PDF solution, combining Acrobat desktop software, mobile scan app, signature app and Acrobat Reader mobile app enhanced with premium mobile features and premium Document Cloud services. | pdf, Acrobat desktop, mobile scan app, signature app, Acrobat Reader mobile app, Document Cloud | Restricted | SCR_023361 | SciCrunch Registry | 2026-09-26 02:17:28 | 0 | |||||||||||
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FAIR Data Station Resource Report Resource Website 1+ mentions |
FAIR Data Station (RRID:SCR_023239) | FAIR-DS | data or information resource, portal, project portal, software resource, web application | Software metadata ingestion platform that helps to improve quality of metadata. Station allows users to record meta-data according to minimum information standards thereby ensuring FAIR scientific data management from the start. | FAIR, FAIR data, metadata quality improvement, record meta-data, minimum information standards, FAIR scientific data management, | Dutch national funding agency NWO 184.035.007 | Free, Freely available | http://data.m-unlock.nl, http://fairbydesign.nl, http://gitlab.com/m-unlock/fairds | SCR_023239 | SciCrunch Registry | 2026-09-26 02:17:27 | 1 | ||||||||
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openMINDS SANDS metadata model Resource Report Resource Website 1+ mentions |
openMINDS SANDS metadata model (RRID:SCR_023498) | openMINDS_SANDS, openMINDS SANDS | data or information resource, narrative resource, standard specification | One of the metadata models of openMINDS metadata framework. Composed of modular metadata schemas for spatial anchoring of neuroscience data structures, including brain atlas definitions. | open science, metadata schema, graph metadata model |
is related to: openMINDS metadata framework is related to: openMINDS controlledTerms metadata model |
European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA1 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA2 785907; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA3 945539; European Union’s Research and Innovation Program Horizon Europe - EBRAINS 2.0 101147319; Helmholtz International BigBrain Analytics and Learning Laboratory (HIBALL) |
Free, Available for download, Freely available | https://openminds-documentation.readthedocs.io/en/latest/schema_specifications/SANDS.html | https://github.com/HumanBrainProject/openMINDS_SANDS | SCR_023498 | SciCrunch Registry | 2026-09-26 02:17:29 | 3 | ||||||
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Charite University and Berlin Institute for Health Research Central Biobank Core Facility Resource Report Resource Website |
Charite University and Berlin Institute for Health Research Central Biobank Core Facility (RRID:SCR_023495) | ZeBanC | access service resource, biobank, core facility, material storage repository, service resource, storage service resource | Integrated healthcare biobank that operates under certified conditions and strict SOPs. Enables biomedical and translational researchers to perform their analyses using high quality biospecimens and data to generate reliable and reproducible research data. Core offers modular biobanking portfolio that can cover workflow from blood collection to storage, including all pre-analytical steps and their documentation. Offers spectrum of additional services ranging from DNA/RNA extraction and virtual microscopy to entire management of sample and data flow for national and international research consortia. Provides secure conventional and automated storage of samples at various temperatures as well as secure data management. | USEDit, ABRF, integrated healthcare biobank, biobank, biospecimens, data, data management, data storage, blood collection, DNA/RNA extraction, virtual microscopy |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
Open | ABRF_563 | https://coremarketplace.org/?FacilityID=563&citation=1 | SCR_023495 | SciCrunch Registry | , Charite/BIH (ZeBanC), Charite - Central Biobank Charite/BIH (ZeBanC), Central Biobank of the Charite | 2026-09-26 02:17:29 | 0 | ||||||
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loadGffToGe_db for custom genome Resource Report Resource Website 1+ mentions |
loadGffToGe_db for custom genome (RRID:SCR_015997) | data processing software, data visualization software, software application, software resource | One stop platform for NGS big data from analysis to visualization. There are about 400 analysis pipelines integrated on Maser. List of all analysis pipelines, including descriptions and approximate execution times, can be found on page for ‘All pipelines’ in the User Guide. loadGffToGe_db for custom genome software loads GFF files of custom genomes to a database for Genome Explorer. It allows the user to browse the results through the GE. | Next Generation Sequencers, Next Generation Sequencers data, Next Generation Sequencers data analysis and visualization, | Ministry of Education ; Culture ; Sports ; Science and Technology ; Japan |
Restricted | https://cell-innovation.nig.ac.jp/maser/index_en.html | SCR_015997 | SciCrunch Registry | Management and Analysis System for Enormous Reads: loadGffToGe_db for custom genome | 2026-09-26 02:17:27 | 1 |
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