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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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BioData Management Portal Resource Report Resource Website |
BioData Management Portal (RRID:SCR_023138) | data repository, service resource, storage service resource | Portuguese distributed infrastructure for biological data and Portuguese node of ELIXIR. | is listed by: DataCite | Free, Freely available | DOI:10.34636 | https://doi.org/10.34636, https://dx.doi.org/10.34636 | SCR_023138 | SciCrunch Registry | BioData Management Portal | 2026-09-26 02:17:26 | 0 | ||||||||
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Barbara A. Mikulski Archive for Space Telescopes Resource Report Resource Website 10+ mentions |
Barbara A. Mikulski Archive for Space Telescopes (RRID:SCR_023137) | data repository, service resource, storage service resource | Astronomical data archive focused on optical, ultraviolet, and near infrared. Used for maximizing scientific accessibility and productivity of astronomical data. MAST hosts data from over dozen missions like Webb, Hubble, TESS, Kepler, and in the future Roman. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17909, DOI:10.17616/R3K897, r3d100010403 | https://doi.org/10.17909, https://dx.doi.org/10.17909, http://doi.org/10.17616/R3K897, https://doi.org/10.17616/R3K897 | SCR_023137 | SciCrunch Registry | Barbara A. Mikulski Archive for Space Telescopes | 2026-09-26 02:17:26 | 19 | ||||||||
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Cancer Research and Management ACGT Master Ontology Resource Report Resource Website |
Cancer Research and Management ACGT Master Ontology (RRID:SCR_006953) | ACGT-MO | controlled vocabulary, data or information resource, ontology | Ontology to represent the domain of cancer research and management in a computationally tractable manner. | owl | is listed by: BioPortal | nlx_157351 | SCR_006953 | SciCrunch Registry | ACGT Master Ontology | 2026-09-26 02:17:25 | 0 | ||||||||
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ECO Resource Report Resource Website 10+ mentions |
ECO (RRID:SCR_002477) | ECO | controlled vocabulary, data or information resource, ontology | A controlled vocabulary that describes types of scientific evidence within the realm of biological research that can arise from laboratory experiments, computational methods, manual literature curation, and other means. Researchers can use these types of evidence to support assertions about research subjects that result from scientific research, such as scientific conclusions, gene annotations, or other statements of fact. ECO comprises two high-level classes, evidence and assertion method, where evidence is defined as a type of information that is used to support an assertion, and assertion method is defined as a means by which a statement is made about an entity. Together evidence and assertion method can be combined to describe both the support for an assertion and whether that assertion was made by a human being or a computer. However, ECO can not be used to make the assertion itself; for that, one would use another ontology, free text description, or other means. ECO was originally created around the year 2000 to support gene product annotation by the Gene Ontology. Today ECO is used by many groups concerned with provenance in scientific research. ECO is used in AmiGO 2 | evidence, assertion, assertion method, gene product, obo, evidence code, experiment, similarity, provenance |
is listed by: BioPortal is related to: AmiGO is related to: Gene Ontology has parent organization: University of Maryland School of Medicine; Maryland; USA has parent organization: Google Code |
NIGMS GM089636 | Free, Available for download, Freely available | nlx_155860 | http://code.google.com/p/evidenceontology/, http://bioportal.bioontology.org/ontologies/ECO | SCR_002477 | SciCrunch Registry | Evidence Codes Ontology, Evidence Ontology, evidenceontology, The Evidence Ontology | 2026-09-26 02:17:25 | 19 | |||||
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DynaMine Resource Report Resource Website 10+ mentions |
DynaMine (RRID:SCR_014559) | software resource, web application | An NMR based method for protein folding prediction. Users can enter a UniProt identifier, FASTA sequences, or upload a file containing FASTA sequences and results are returned., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | nmr, protein folding, prediction, fasta, sequence, dynamics | PMID:24225580 | THIS RESOURCE IS NO LONGER IN SERVICE | http://dynamine.ibsquare.be | SCR_014559 | SciCrunch Registry | 2026-09-26 02:17:24 | 44 | |||||||||
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Ultracut: E ultramicrotome Resource Report Resource Website 1+ mentions |
Ultracut: E ultramicrotome (RRID:SCR_022980) | instrument resource | Reichert Jung Ultracut E, article number 131-960, is used to cut ultrathin and semithin sections of resin embedded samples for electron microscopy. | USEDit, Instrument, Equipment, ultramicrotome, cut ultrathin and semithin sections, resin embedded samples, electron microscopy | is listed by: USEDit | SCR_022980 | SciCrunch Registry | 2026-09-26 02:17:23 | 1 | |||||||||||
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3Omics Resource Report Resource Website 1+ mentions |
3Omics (RRID:SCR_014678) | software resource, web application | THIS RESOURCE IS NO LONGER IN SERVICE, documented October 19, 2016. A web tool for visualizing and integrating multiple inter- or intra-transcriptomic, proteomic, and metabolomic human data. 3Omics generates inter-omic correlation networks to visualize relationships in data with respect to time or experimental conditions for transcripts, proteins and metabolites. | metabolomics, metabolomics tool, transcriptomics, proteomics, inter-omic, correlation, network, relationship visualization | is listed by: Metabolomics Workbench | PMID:23875761 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014678 | SciCrunch Registry | 2026-09-26 02:17:26 | 1 | |||||||||
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GAITOR Suite Resource Report Resource Website |
GAITOR Suite (RRID:SCR_023031) | data analysis software, data processing software, software application, software resource | Software suite to analyse gait trials collected with Experimental Dynamic Gait Arena for Rodents. Used for rodent gait analysis. | EDGAR, Experimental Dynamic Gait Arena for Rodents, Rodent Gait Analysis, | Craig Neilsen Foundation ; NIAMS R00AR057426; NIAMS R01AR068424; NIAMS R01AR071444; NIAMS R03AR067504; NINDS R21NS096571; NSF DGE1745068 |
PMID:29955094 | SCR_023031 | SciCrunch Registry | GAITOR, GAITOR Suite system, Gait Analysis Instrumentation and Technology Optimized for Rodents | 2026-09-26 02:17:24 | 0 | |||||||||
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Bertin Technologies: Precellys 24 tissue homogenizer Resource Report Resource Website 1+ mentions |
Bertin Technologies: Precellys 24 tissue homogenizer (RRID:SCR_022979) | instrument resource | The Precellys 24 homogenizer with automatic tube locking system with the ability to process up to 24 tubes simultaneously., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | USEDit, Instrument, Equipment, Bertin Technologies, homogenizer, automatic tube locking system, | is listed by: USEDit | THIS RESOURCE IS NO LONGER IN SERVICE | Model_Number_Precellys_24 | SCR_022979 | SciCrunch Registry | Bertin Precellys 24 tissue homogenizer | 2026-09-26 02:17:23 | 5 | ||||||||
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IOX2 Resource Report Resource Website 1+ mentions |
IOX2 (RRID:SCR_022973) | analysis service resource, data acquisition software, data analysis service, data processing software, production service resource, service resource, software application, software resource | Software tool to acquire, analyze, view, and store physiological data generated during preclinical experiment. Has library of application specific analysis modules for real time signal processing. | emka TECHNOLOGIES, physiological data, preclinical experiment, real time signal processing, | Restricted | SCR_022973 | SciCrunch Registry | 2026-09-26 02:17:23 | 6 | |||||||||||
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iNSCOPIX: nVoke System Resource Report Resource Website 1+ mentions |
iNSCOPIX: nVoke System (RRID:SCR_023028) | instrument resource | Miniature microscope system that integrates in vivo cellular resolution calcium imaging with simultaneous or sequential optogenetic manipulation to causally link neural circuit activity with behavior. | Instrument, Equipment, USEDit, Inscopix, miniature microscope, in vivo cellular resolution, calcium imaging, optogenetic manipulation, link neural circuit activity with behavior, | is listed by: USEDit | Restricted | SCR_023028 | SciCrunch Registry | Inscopix nVoke System | 2026-09-26 02:17:24 | 4 | |||||||||
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Open Brain Consent Resource Report Resource Website |
Open Brain Consent (RRID:SCR_022972) | data or information resource, portal, topical portal | Platform for informing research participants and obtaining consent to share brain imaging data. Provides suggested wording/templates for MRI studies human participant consent forms (including GDPR version), reference of tools for data anonymization, etc to make prospective data sharing possible. | MRI, obtaining consent to share brain imaging data, consent, share brain imaging data, MRI studies human participant consent forms, data sharing | Free, Freely available | SCR_022972 | SciCrunch Registry | 2026-09-26 02:17:23 | 0 | |||||||||||
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CPTAC Proteomics Pipeline Infrastructure Ontology Resource Report Resource Website |
CPTAC Proteomics Pipeline Infrastructure Ontology (RRID:SCR_006945) | CPTAC | controlled vocabulary, data or information resource, ontology | A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project | owl | is listed by: BioPortal | nlx_157349 | SCR_006945 | SciCrunch Registry | 2026-09-26 02:17:25 | 0 | |||||||||
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Jekyll Tutorial Resource Report Resource Website |
Jekyll Tutorial (RRID:SCR_022859) | data or information resource, portal, topical portal | Website tutorial for creating Jekyll-based scientific website, including editing in GitHub, working locally with Jekyll and applying Jekyll and Markdown formatting basics, and using custom themes. | creating Jekyll based scientific website creation | has parent organization: Harvard Medical School; Massachusetts; USA | Free, Freely available | SCR_022859 | SciCrunch Registry | 2026-09-26 02:17:23 | 0 | ||||||||||
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PACEMweb Resource Report Resource Website |
PACEMweb (RRID:SCR_023083) | software resource, web application | Web tool for aggregate consumer exposure assessment. Model is based on realistic product usage information obtained from surveys. Information on usage, frequency and amount of personal care products and household cleaning products in various European countries is included. | aggregate consumer exposure assessment, product usage from surveys, personal care products, household cleaning products, European countries | Dutch Ministry of Health ; Welfare and Sport ; Long Range Science Strategy Program of Cosmetics Europe |
PMID:36522445 | Free, Freely available | SCR_023083 | SciCrunch Registry | Probabilistic Aggregate Consumer Exposure Model Web | 2026-09-26 02:17:26 | 0 | ||||||||
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MouseLight Neuron Browser Resource Report Resource Website 10+ mentions |
MouseLight Neuron Browser (RRID:SCR_016669) | software resource, web application | Interactive web platform for anyone to explore, search, filter and visualize the single neuron reconstructions. | explore, search, filter, visualize, single, neuron, reconstruction, mouse, brain |
has parent organization: Janelia Research is provided by: MouseLight Project |
Free, Freely available, Tutorial available, Acknowledgement required | http://mouselight.janelia.org/ | SCR_016669 | SciCrunch Registry | Neuron Browser, NeuronBrowser, MouseLight Neuron Browser | 2026-09-26 02:17:26 | 31 | ||||||||
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Piirus Resource Report Resource Website |
Piirus (RRID:SCR_013964) | collaboration tool, data or information resource, database, software resource | A database and collaboration tool which allows researchers to make contacts or find collaborators within their field or from a different discipline. Users can create a profile detailing their collaboration interests, research areas, and methodologies as well as add links to external sites such as LinkedIn and Academia.edu. Piirus takes the information from users' profiles to suggest researchers with whom they may be interested in collaborating with. Users can also search for users with particular interests, expertise, or techniques. | collaboration tool, connect, networking |
is listed by: Connected Researchers is related to: Connected Researchers is related to: Boston University; Massachusetts; USA has parent organization: University of Warwick; Coventry; United Kingdom |
Available to the research community | SCR_013964 | SciCrunch Registry | 2026-09-26 02:17:27 | 0 | ||||||||||
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loom-viewer Resource Report Resource Website |
loom-viewer (RRID:SCR_016683) | data processing software, data visualization software, software application, software resource | Software tool for sharing, browsing and visualizing single-cell data stored in the Loom file format. | sharing, browsing, visualizing, single, cell, data, stored, Loom, file, format | works with: LoomPy | Free, Available for download, Freely available | SCR_016683 | SciCrunch Registry | 2026-09-26 02:17:26 | 0 | ||||||||||
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MetGENE Resource Report Resource Website 1+ mentions |
MetGENE (RRID:SCR_023402) | data access protocol, software resource, web service | Web tool identifies associations between genes and metabolites that are biosynthesized, metabolized, or transported by proteins coded by genes. Gene centric metabolomics information retrieval tool. Knowledge based, gene centric data aggregator that hierarchically retrieves information about genes, their related pathways, reactions,metabolites, and metabolomic studies from standard data repositories under one dashboard to enable ease of access through centralization of relevant information. Information can be contextualized by filtering along species, anatomy tissue and disease or phenotype. | Gene centric metabolomics information retrieval, genes and metabolites associations identification, gene centric data aggregator, | has parent organization: University of California at San Diego; California; USA | NIH Common Funds | Free, Freely available | https://bdcw.org/MW/docs/MetGENETutorial.pdf | SCR_023402 | SciCrunch Registry | 2026-09-26 02:17:28 | 1 | ||||||||
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HetMatPy Resource Report Resource Website 1+ mentions |
HetMatPy (RRID:SCR_023409) | data analysis software, data processing software, network analysis software, software application, software resource | Software Python package for matrix storage and operations on hetnets. Enables identifying relevant network connections between set of query nodes. | Hetionet, matrix storage, operations on hetnets, hetnets, heterogeneous networks, | Gordon and Betty Moore Foundation ; NCI R01 CA237170; NHGRI R01 HG010067 |
PMID:36711546 | Free, Available for download, Freely available | SCR_023409 | SciCrunch Registry | hetmatpy | 2026-09-26 02:17:28 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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