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https://discover.blackfynn.com/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 22, 2023. Data repository for scientific data. Open data library to explore neuroscience data for neurodegenerative diseases for which there are no disease modifying treatments.

Proper citation: Blackfynn Discover (RRID:SCR_018068) Copy   

•   Source: SciCrunch Registry
  

https://biospherix.com/products/c-chamber

Culture chamber for cell culture by BioSpherix. Functionalized by gas controllers for all bioactive gases, e.g. O2, CO2, CO, NO, etc. Made of clear polycarbonate. Magnetic seal door. Temperature is controlled. Combines with ProOx 110, ProCO2, ProOx C21, OxyCycler Series.

Proper citation: BioSpherix: C-Chamber (RRID:SCR_018189) Copy   

•   Source: SciCrunch Registry
  

http://www.innovision-systems.com/Products/MaxTraq.html

Software package for motion capture analysis by Innovision Systems Inc.

Proper citation: MaxTRAQ (RRID:SCR_018188) Copy   

•   Source: SciCrunch Registry
  

https://www.sonybiotechnology.com/us/instruments/sh800s-cell-sorter/

Benchtop cell sorter that sorts wide range of cell sizes for many applications using microfluidic sorting chips. Integrated with comprehensive fluidics controls and advanced automation for set-up, acquisition, sort and analysis. System software supports sorting into tubes and 96- and 384-well plates. Software generates FCS 3.0 and FCS 3.1 files that can be exported to third party analysis tools. For non-clinical research use only. For applications in which cross-contamination is concern, optional e-beam sterilized consumables can be used to replace sample line and sorting chip. Optional class A2 Level II biosafety cabinet provides protection for personnel and products. Biosafety cabinet meets international standards.Optical design offers up to four collinear excitation lasers (488 nm, 405nm, 561nm and 638nm) and six fluorescence detectors. The six free-form PMTs enable detection of fluorescence signals from any laser based on filter selection.

Proper citation: Sony biotechnology: SH800S Cell Sorter (RRID:SCR_018066) Copy   

•   Source: SciCrunch Registry
  

http://crispr.dbcls.jp/

Software for designing CRISPR/Cas guide RNA with reduced off target sites. Used for rational design of CRISPR/Cas target. Web server for selecting rational CRISPR/Cas targets from input sequence. Server currently incorporates genomic sequences of human, mouse, rat, marmoset, pig, chicken, frog, zebrafish, Ciona, fruit fly, silkworm, Caenorhabditis elegans, Arabidopsis, rice, Sorghum and budding yeast.

Proper citation: CRISPRdirect (RRID:SCR_018186) Copy   

•   Source: SciCrunch Registry
  

http://fold.weizmann.ac.il/fldbin/findex

Web tool to predict whether given protein sequence is intrinsically unfolded. Algorithm for predicting ordered and disordered regions in protein based on its primary structure amino acid sequence. Graphic web server to predict if given protein sequence is intrinsically unfolded implementing algorithm of Uversky and co-workers, which is based on average residue hydrophobicity and net charge of sequence.

Proper citation: FoldIndex (RRID:SCR_018390) Copy   

•   Source: SciCrunch Registry
  

http://viewer.shigen.info/medakavw/crisprtool/

Web medaka pattern match tool for short sequence and/or pattern. Used to search database of medaka genome on target and off target sites when editing genome with CRISRP-Cas9.

Proper citation: NBRP Medaka Pattern Match (RRID:SCR_018157) Copy   

•   Source: SciCrunch Registry
  

http://xray.bmc.uu.se/~alwyn/TAJ/Home.html

Software for visualization of macromolecular structures, atomic coordinates, and 3D intensity maps, and for building macromolecular structures.

Proper citation: O (RRID:SCR_018394) Copy   

•   Source: SciCrunch Registry
  

https://www.mizarimaging.com/wp-content/uploads/2018/11/Tilt-Datasheet-3.pdf

Modular light sheet illumination system designed to image living samples with minimal photobleaching or phototoxicity by Mizar Imaging. Enables high spatial and temporal resolution light sheet imaging to be added to existing or new microscope system.

Proper citation: Mizar Imaging: Tilt High Resolution Light Sheet Imaging System (RRID:SCR_018156) Copy   

•   Source: SciCrunch Registry
  

https://covid19.figshare.com/

Portal to discover COVID-19 open research data on Figshare. Figshare collection of COVID-19 related research data.

Proper citation: COVID-19 research data on Figshare (RRID:SCR_018277) Copy   

•   Source: SciCrunch Registry
  

https://s2genomics.com/singulator-100/

Singulator to automate tissue preparation for single cell and single nucleus analyses. Bench top Singulator System and single use cartridge enable tissue dissociations into singulated cells or nuclei suspensions.

Proper citation: S2 Genomics: Singulator 100 Automated Single Cell Prep Automated System (RRID:SCR_018155) Copy   

•   Source: SciCrunch Registry
  

http://bioinformatics.fh-hagenberg.at/site/index.php?id=17

Software scoring system to identify peptides out of tandem mass spectrometry data using database of known proteins. Universal identification algorithm optimized for high resolution and high accuracy tandem mass spectra. Software tool as peptide and protein identification algorithm developed by Bioinformatics Research Group University of Applied Sciences Upper Austria in close cooperation with group of Karl Mechtler at IMP Vienna, Austria.

Proper citation: MS Amanda (RRID:SCR_018396) Copy   

•   Source: SciCrunch Registry
  

http://stmichaelshospitalresearch.ca/wp-content/uploads/2015/09/ZEN-Black-Quick-Guide.pdf

Software used to analyze images obtained from microscope. ZEN Black is software Zeiss uses to run their laser-based instruments.

Proper citation: Black Zen software (RRID:SCR_018163) Copy   

•   Source: SciCrunch Registry
  

https://outbreak.info/

Resource to aggregate all outbreak information into single location during outbreaks of emerging diseases, such as COVID-19.

Proper citation: outbreak.info (RRID:SCR_018282) Copy   

•   Source: SciCrunch Registry
  

https://discourse.data-against-covid.org/t/list-of-pis-supporting-this-endeavour/124

Group of volunteer data scientists, machines learning experts, bioinformaticians and professional software developers who have joined together to offer their expertise for any data analysis problems that arise in context of ongoing coronavirus pandemic.

Proper citation: Data-Against-COVID Team (RRID:SCR_018288) Copy   

•   Source: SciCrunch Registry
  

https://techagainstcovid.com/

Cloud resources for COVID-19 research provided by Rescale, Google Cloud, and Microsoft Azure. High performance computing resources immediately available for COVID-19 research.

Proper citation: Cloud resources for COVID-19 research (RRID:SCR_018286) Copy   

•   Source: SciCrunch Registry
  

https://nemoanalytics.org/

Portal enabling web based visualization and analysis of multi omic data describing cell types in developing and adult brain, powered by gEAR and EpiViz. Release 1 on April 2019 includes single cell and bulk tissue RNAseq, ATACseq, and ChIPseq from fetal human prefrontal cortex, as well as from stem cell models of neural induction. Portal will expand to include multiple regions of developing and adult brain and additional analytical tools.

Proper citation: NeMO Analytics (RRID:SCR_018164) Copy   

•   Source: SciCrunch Registry
  

https://online-shop.eppendorf.us/US-en/Centrifugation-44533/Centrifuges-44534/Centrifuge-5920R-PF-240991.html

Swinging bucket benchtop centrifuge. Eppendorf 5920 R refrigerated centrifuge.

Proper citation: Eppendorf: 5920R centrifuge (RRID:SCR_018092) Copy   

•   Source: SciCrunch Registry
  

https://github.com/WangHYLab/fcirc

Software Python pipeline for linear and circular RNAs of known fusions exploration. Pipeline for exploring linear transcripts and circRNAs of known fusions based on RNA-Seq data. Known fusion genes are from multiple databases like COSMIC, ChimerDB, TicDB, FARE-CAFE and FusionCancer or user-added gene-pairs.

Proper citation: Fcirc (RRID:SCR_018090) Copy   

•   Source: SciCrunch Registry
  

https://precisionary.com/wp-content/uploads/2018/06/Compresstome-VF-700-0Z-User-Manual_FINAL.pdf

Vibrotome by Precisionary Instruments designed for cutting fixed tissue slices for histology studies. Offers two point stabilization of blade holder to eliminate unwanted chatter marks on surfaces of tissue slice. Fully automated to section fixed tissues with thickness range of 4 um to 2000 um with adjustable precision of 1 um.

Proper citation: Precisionary: Compresstome VF-700 (RRID:SCR_018409) Copy   

•   Source: SciCrunch Registry