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http://www.arrayserver.com/wiki/index.php?title=ArrayStudio_Online_Help

Software package which provides statistics and visualization for analysis of high dimensional quantification data including microarray or RTPCR data or Taqman data, genotype data including SNP or Copy Number data and Next Generation Sequencing data. Provides integrated environment for analyzing and visualizing high dimensional data.

Proper citation: Array Studio (RRID:SCR_010970) Copy   

•   Source: SciCrunch Registry

http://bioinf.wehi.edu.au/limma/

Software package for the analysis of gene expression microarray data, especially the use of linear models for analyzing designed experiments and the assessment of differential expression.

Proper citation: LIMMA (RRID:SCR_010943) Copy   

•   Source: SciCrunch Registry

http://www.zbh.uni-hamburg.de/?id=292

A web-based software tool for the integrative analysis of cancer genomics data. It stores different kinds of downstream processed data from multiple samples in a single database. A powerful search interface allows to dynamically filter the data to be displayed with respect to different criteria. The combination of AJAX technology and a fast visualization engine facilitates a highly dynamic visualization for large amounts of data. FISH Oracle 2 is able to simultaneously display different data sets, thus simplifying their comparison. Filter and display options can be changed on the fly. High quality image export enables the life scientist to easily communicate the results, e.g. in presentations or publications. A comprehensive data administration assures to keep track of the data stored in the database.

Proper citation: FISH Oracle (RRID:SCR_010927) Copy   

•   Source: SciCrunch Registry

http://opossum.cisreg.ca

A web-based system for the detection of over-represented conserved transcription factor binding sites and binding site combinations in sets of genes or sequences.

Proper citation: oPOSSUM (RRID:SCR_010884) Copy   

•   Source: SciCrunch Registry

http://www.arrayanalysis.org/

Tools for microarray quality control and pre-processing.

Proper citation: ArrayAnalysis.org (RRID:SCR_010932) Copy   

•   Source: SciCrunch Registry

http://bio-bwa.sourceforge.net/

Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp.

Proper citation: BWA (RRID:SCR_010910) Copy   

•   Source: SciCrunch Registry

http://homer.ucsd.edu/

Software tools for Motif Discovery and next-gen sequencing analysis. Used for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets. Collection of command line programs for unix style operating systems written in Perl and C++.

Proper citation: HOMER (RRID:SCR_010881) Copy   

•   Source: SciCrunch Registry

http://www.carleton.ca/

Public comprehensive university in Ottawa, Ontario, Canada. Founded in 1942 as Carleton College, a private, non-denominational evening college to serve returning World War II.

Proper citation: Carleton University; Ontario; Canada (RRID:SCR_011136) Copy   

•   Source: SciCrunch Registry

http://www.mrc.ac.uk/Fundingopportunities/index.htm

The Medical Research Council is a publicly-funded organization dedicated to improving human health. We support research across the entire spectrum of medical sciences, in universities and hospitals, in our own units, centers and institutes in the UK, and in our units in Africa.

Proper citation: Medical Research Council (RRID:SCR_011018) Copy   

•   Source: SciCrunch Registry

https://uclouvain.be/fr/index.html

Belgium's largest French speaking university.

Proper citation: Catholic University of Louvain; Louvain-la-Neuve; Belgium (RRID:SCR_011141) Copy   

•   Source: SciCrunch Registry

http://www.ics-mci.fr/en/

Research infrastructure for generation of new mouse models,being therefore the most important transgenic mouse production unit in France.

Proper citation: Mouse Clinical Institute; Alsace; France (RRID:SCR_011021) Copy   

•   Source: SciCrunch Registry

http://www.uccaribe.edu/

Private university in Bayamón, Puerto Rico that focuses on graduate studies and professional certifications in the health sciences.

Proper citation: Central University of the Caribbean; Puerto Rico; USA (RRID:SCR_011145) Copy   

•   Source: SciCrunch Registry

https://genome.unc.edu/

Database for microarray data storage, retrieval, analysis, and visualization.

Proper citation: UNC Microarray Database (RRID:SCR_010979) Copy   

•   Source: SciCrunch Registry

http://www.baylor.edu/

Private Baptist research university in Waco, Texas. Baylor was chartered in 1845 by the last Congress of the Republic of Texas.

Proper citation: Baylor University; Texas; USA (RRID:SCR_011029) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/emory-university

THIS RESOURCE IS NO LONGER IN SERVICE,documented on February 3rd,2022.

Proper citation: Emory University Labs and Facilities (RRID:SCR_011031) Copy   

•   Source: SciCrunch Registry

http://www.bii.a-star.edu.sg/

The Bioinformatics Institute (BII) was set up by the Agency for Science and Technology Research (A*STAR) in July 2001; it was re-launched with a strong scientific program in the autumn months of 2007. Located in the Biopolis, BII is conceived as the computational biology research and postgraduate training institute as well as a national resource centre in bioinformatics within the Biomedical Research Council (BMRC) of A*STAR. The BII focuses on theoretical approaches aimed at understanding biomolecular mechanisms that underlie biological phenomena, the development of computational methods to support this discovery process, and experimental verification of predicted molecular and cellular functions of genes and proteins with biochemical methods. Together with the BMRC, A*STAR research institutes and multinational R&D organizations in the Biopolis, the BII is situated in a conducive environment for exchange of scientific knowledge and friendly interaction that will prompt greater collaborations, and position the Biopolis as a notable biomedical R&D hub in Asia and in the world.

Proper citation: Bioinformatics Institute; Singapore; Singapore (RRID:SCR_011117) Copy   

•   Source: SciCrunch Registry

http://www.bbsrc.ac.uk/

The UK''s leading funding agency for academic research and training in the non-clinical life sciences.

Proper citation: Biotechnology and Biological Sciences Research Council (RRID:SCR_011118) Copy   

•   Source: SciCrunch Registry

http://www.acphs.edu/

Albany College of Pharmacy and Health Sciences is committed to the advancement of health, with an array of degree programs designed to help students succeed in pharmacy and other health related fields. There are nearly 1,600 students enrolled at ACPHS and more than 100 full- and part-time faculty. The College''s main campus is located in Albany, New York; its satellite campus is in Colchester, Vermont. The College offers a Doctor of Pharmacy (Pharm.D.) program; four-year bachelor''s degrees in Pharmaceutical Sciences, Health and Human Sciences and Biomedical Technology; and a certificate program in Cytotechnology. Opportunities exist for students within each of these programs to work side-by-side with faculty on groundbreaking research in areas such as cancer, infectious disease and obesity. These experiences, along with access to resources such as the cutting edge Pharmaceutical Research Institute, are rarely afforded to undergraduates at most schools and are part of what distinguishes ACPHS from other colleges and universities. ACPHS also offers master''s degree programs in Pharmaceutical Sciences, Health Outcomes Research and Pharmacy Administration. In addition, students may pursue joint degrees in the fields of medicine, law and business through cooperative agreements with area institutions. Graduates of the College are prepared for a range of careers such as: biochemist, clinical laboratory scientist, consumer safety officer, drug information specialist, environmental toxicologist, health policy analyst, hospital administrator, pharmacist, physician, physician assistant and research scientist. The College is not only focused on the success of its own students, but also students throughout the region. ACPHS operates several programs for underserved youth in the area, each of which is designed to help them improve self confidence, develop new interests and skills, and inspire them to one day attend college themselves.

Proper citation: Albany College of Pharmacy and Health Sciences; New York; USA (RRID:SCR_011088) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/physiological-proteomics-core-facility-iu

THIS RESOURCE IS NO LONGER IN SERVCE, documented January 23, 2019. Facility enables researchers to identify and quantify proteins in simple or complex samples and characterize protein post-translational modifications or conjugates. PPCF provides the following mass spectrometry-based proteomics services: Protein Identification Protein Quantification Differential Protein Expression Analysis Protein Post-translational Modification Analysis Bioinformatics and Pathway Analysis Biomarker Discovery Please note, a set up fee is applied when the number of samples is less than 10.

Proper citation: Indiana University School of Medicine Physiological Proteomics Core Facility (RRID:SCR_011005) Copy   

•   Source: SciCrunch Registry

https://www.butler.edu/pharmacy-health/

The College of Pharmacy and Health Sciences strives to provide effective educational experiences in the health sciences. By so doing, the College facilitates the development of life-long learners with a liberal arts foundation who are able to serve society as dedicated, competent health professionals and community leaders. The Butler University College of Pharmacy and Health Sciences is a member of the American Association of Colleges of Pharmacy and is accredited by the Accreditation Council for Pharmacy Education. By completion of the doctor of pharmacy curriculum of the College of Pharmacy and Health Sciences, its graduates fulfill the educational requirements for examination and licensure as pharmacists in every state in the nation. Degrees offered: -Doctor of Pharmacy -Master of Physician Assistant Studies -Master of Science in Pharmaceutical Sciences -Doctor of Pharmacy/Master of Business Administration Dual Degree Curriculum

Proper citation: Butler University; College of Pharmacy & Health Sciences (RRID:SCR_011126) Copy   

•   Source: SciCrunch Registry