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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Solar Eclipse Imaging Genetics tools Resource Report Resource Website 10+ mentions |
Solar Eclipse Imaging Genetics tools (RRID:SCR_009645) | Solar Eclipse Imaging Genetics tools | software application, software resource | Software tools optimized for performing univariate and multivariate imaging genetics analyses while providing practical correction strategies for multiple testing. The goal of this project is to merge two important research directions in modern science, genetics and neuroimaging. This entails combining modern statistical genetic methods and quantitative phenotyping performed with high dimensional neuroimaging modalities. So far, however, standard imaging tools are unable to deal with large-scale genetics data, and standard genetics tools, in turn, are unable to accommodate large size and binary format of the image data. Their focus is to create imaging genetics tools for classical genetic and epigenetic epidemiological analyses such as heritability, pleiotropy, quantitative trait loci (QTL) and genome-wide association (GWAS), gene expression, and methylation analyses optimized for traits derived from structural and functional brain imaging data | c++, genetic association, genomic analysis, gifti, imaging genomics, linux, loni pipeline, macos, microsoft, nifti, posix/unix-like, snp, gene, windows, windows xp, genetics, neuroimaging, heritability, pleiotropy, quantitative trait loci, genome-wide association, gene expression, methylation, trait, structural neuroimaging, functionalneuroimaging, brain imaging | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Non-commercial, Open Software License, v3, Http://www.nitrc.org/include/glossary.php#552 | nlx_155966 | SCR_009645 | SciCrunch Registry | 2026-09-26 02:19:20 | 14 | ||||||||
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GLFSINGLE/GLFTRIO/GLFMULTIPLES Resource Report Resource Website 1+ mentions |
GLFSINGLE/GLFTRIO/GLFMULTIPLES (RRID:SCR_013128) | software application, software resource | Software application that is a GLF-based variant caller for next-generation sequencing data. It takes one/three/multiple GLF format genotype likelihood files as input and generates a VCF-format set of variant calls as output. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154358 | SCR_013128 | SciCrunch Registry | 2026-09-26 02:19:22 | 1 | ||||||||||
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Pointless Resource Report Resource Website 100+ mentions |
Pointless (RRID:SCR_014218) | software application, software resource | Pointless scores all the possible Laue groups consistent with the crystal class, which is based on cell dimension restraints, by matching potential symmetry equivalent reflections. For chiral systems, the Laue group uniquely implies the point group then checks sets of reflections which may be systematically absent to suggest a possible spacegroup. There is also a check for lattice centering, i.e., a check for whole classes of reflections having essentially zero intensity, including a check for obverse/inverse twinning in rhombohedral systems. Pointless is also capable of converting XDS, Scalepack, SHELX or SAINT formats to MTZ. | laue group, space group, crystal structure, data reduction | is affiliated with: iMosflm | DOI:10.1107/S090744491003982X | SCR_014218 | SciCrunch Registry | 2026-09-26 02:19:24 | 134 | ||||||||||
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JCM Resource Report Resource Website 1+ mentions |
JCM (RRID:SCR_010653) | JCM | biomaterial supply resource, material resource | The Microbe Division in RIKEN-BRC has been collecting, preserving, and distributing cultured microbial strains as one of the leading culture collections in the world since established as Japan Collection of Microorganisms (JCM) in 1981. JCM aims to contribute to scientific communities by maintaining and serving high-quality microbial resources useful for general microbial studies and various research fields particularly in health and environmental science. JCM has participated in the National BioResource Project supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan as the core facility for General Microbes. JCM maintains approximately 19,900 strains as of Sept. 2010, and the approximate numbers of the available strains from JCM are: 7,400 strains of aerobic and anaerobic bacteria including actinomycetes, 300 strains of archaea, and 4,100 strains of fungi including yeasts (in total ca. 12,000 strains). Strains held at JCM are limited to those classified in Risk Group 1 or 2. Information of the available strains is opened to the public through the JCM On-line Catalogue Database. Genomic DNA samples of some strains are also distributed in cooperation with RIKEN BRC-DNA Bank. More than 3,500 strains are annually distributed to domestic and overseas researchers. JCM welcomes a deposit of microbial strains published or designed to be published in scientific papers as well as an order for microbial cultures. | culture, strain, catalog |
is listed by: One Mind Biospecimen Bank Listing has parent organization: RIKEN BioResource Center |
Japanese Ministry of Education Culture Sports Science and Technology MEXT | nlx_68299 | SCR_010653 | SciCrunch Registry | Japan Collection of Microorganisms | 2026-09-26 02:19:21 | 1 | |||||||
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PerlPrimer Resource Report Resource Website 100+ mentions |
PerlPrimer (RRID:SCR_012038) | software application, software resource | A free, open-source GUI software application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. |
is listed by: OMICtools is listed by: Debian has parent organization: SourceForge |
PMID:15073005 DOI:10.1093/bioinformatics/bth254 |
Open unspecified license | OMICS_02354 | https://sources.debian.org/src/perlprimer/ | SCR_012038 | SciCrunch Registry | PerlPrimer - open-source PCR primer design | 2026-09-26 02:19:21 | 247 | |||||||
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GGSD Resource Report Resource Website |
GGSD (RRID:SCR_013129) | software application, software resource | Web-based, relational database driven data management software package for the management of large scale genetic studies. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, php, perl, web-based | is listed by: Genetic Analysis Software | nlx_154355 | SCR_013129 | SciCrunch Registry | Generic Genetic Studies Database | 2026-09-26 02:19:21 | 0 | |||||||||
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NeuroGL Resource Report Resource Website |
NeuroGL (RRID:SCR_013803) | software application, software resource | A software application which is used to create navigable visuals of neural structures. The current version of the program accepts NeuroZoom ASCII files as input. Users can visit CNIC's online repository for a full list of free, available models. The current version of the software available is Version 1.2, last updated on July 13, 2004. | software application, visualization, neural structures, interactive |
is listed by: Computational Neurobiology and Imaging Center is related to: Computational Neurobiology and Imaging Center has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Free, Public | SCR_013803 | SciCrunch Registry | 2026-09-26 02:19:23 | 0 | ||||||||||
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Scirus - for scientific information only Resource Report Resource Website 10+ mentions |
Scirus - for scientific information only (RRID:SCR_010657) | Scirus | service resource, software resource | Science-specific search engine with over 575 million scientific items indexed at last count (May 2013), it allows researchers to search for not only journal content but also scientists'' homepages, courseware, pre-print server material, patents and institutional repository and website information. Scirus helps you quickly locate scientific information on the Web: * Filters out non-scientific sites. For example, if you search on REM, Google finds the rock group - Scirus finds information on sleep, among other things * Finds peer-reviewed articles such as PDF and PostScript files, which are often invisible to other search engines. * Searches the most comprehensive combination of web information, preprint servers, digital archives, repositories and patent and journal databases. Scirus goes deeper than the first two levels of a Web site, thereby revealing much more relevant information. Scirus has proved so successful at locating science-specific results on the Web that the Search Engine Watch Awards voted Scirus ''Best Specialty Search Engine'' in 2001 and 2002 and ''Best Directory or Search Engine Website'' WebAward from Web Marketing Association in 2004, 2005, 2006 and 2007. Give your Web site greater functionality and enhance the experience of your users, by adding Scirus to your home page for free. Scirus uses the latest in search engine technology to pinpoint precise scientific information that other search engines can not reach, including pdf files and peer reviewed articles. Make your Web site more visible to the scientific community, by submitting it for inclusion on Scirus. You will increase the chance of scientists finding your site when looking for information and you could increase your visitor rate. | training tools, search engine, scientific, scholarly, technical, medical, report, peer-reviewed, article, patent, pre print, journal, plugin | is listed by: 3DVC | Free | nlx_68864 | SCR_010657 | SciCrunch Registry | 2026-09-26 02:19:21 | 28 | ||||||||
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National Psoriasis BioBank Resource Report Resource Website |
National Psoriasis BioBank (RRID:SCR_010537) | National Psoriasis BioBank | biomaterial supply resource, material resource | The National Psoriasis Victor Henschel BioBank is a collection of biological samples and clinical information used by qualified scientists to further the field of psoriasis genetics. Once completed, the National Psoriasis BioBank will be the largest collection of psoriasis DNA samples in the world, moving us closer to understanding the causes of psoriatic diseases, discovering more and better treatments and finding a cure. The BioBank is currently collecting DNA from people with and without psoriasis and/or psoriatic arthritis. Simply by donating your DNA����??a blood sample and a swab of your cheek cells����??and providing us with your medical history, you can help us find a cure. Samples will be processed and stored at a private laboratory and not at the National Psoriasis Foundation. The National Psoriasis BioBank is part of the Genetic Alliance BioBank (GA BioBank), a centralized repository for the collection, storage and distribution of biological samples (including DNA, serum, cells and tissues) and clinical data for genetic researchers. | psoriasis, normal, psoriatic arthritis, genetics, clinical data, dna, blood, cell, cheek cell |
is listed by: One Mind Biospecimen Bank Listing has parent organization: National Psoriasis Foundation has parent organization: Genetic Alliance Biobank |
Psoriasis, Normal, Psoriatic arthritis | Public: For qualified scientists to further the field of psoriasis genetics. | nlx_25849 | SCR_010537 | SciCrunch Registry | Victor Henschel BioBank, National Psoriasis Victor Henschel BioBank | 2026-09-26 02:19:21 | 0 | ||||||
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Movement Disorders Biobank Resource Report Resource Website |
Movement Disorders Biobank (RRID:SCR_010659) | MDBB | biomaterial supply resource, material resource | A biobank of human biological material and genetic information. It provides samples and information to researchers in order to identify new genes and clarify pathogenic mechanisms of diseases. The biobank offers biochemical and molecular diagnoses of genetic dystonias, Parkinson's disease and NBIA disorders, as well as storage of biological samples for external institutions. | dna, fibroblast, movement disorder, neurodegeneration, brain iron accumulation disorder, dystonia, parkinson's disease, phenotype, genotype, gene, biobank |
is listed by: One Mind Biospecimen Bank Listing is related to: EuroBioBank has parent organization: EuroBioBank |
Movement disorder, Neurodegeneration with Brain Iron Accumulation disorder, Dystonia, Parkinson's disease | nlx_69108 | http://www.istituto-besta.it/Area-Ricerca.aspx?doc=Elenco-Unita-Operative&IdUO=UO-NEUROGENETICAMOLECOLARE | SCR_010659 | SciCrunch Registry | 2026-09-26 02:19:21 | 0 | |||||||
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TIFF Stack Sub-Sampler Resource Report Resource Website |
TIFF Stack Sub-Sampler (RRID:SCR_013804) | TSS | software application, software resource | A software application which reduces the number of voxels used to represent a volumetric dataset by means of subsampling, i.e., computes a smaller version of a given dataset. Stacks can be selected from the disk by point and click and users are free to specify the new dimensions as actual pixels or as a percent of the original dimensions. The current version is Version 1.0, last updated on February 10, 2003. | software application, TSS, minimize dataset |
is listed by: Computational Neurobiology and Imaging Center is related to: Computational Neurobiology and Imaging Center has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Free, Public | SCR_013804 | SciCrunch Registry | 2026-09-26 02:19:23 | 0 | |||||||||
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CHROMSCAN Resource Report Resource Website 1+ mentions |
CHROMSCAN (RRID:SCR_013131) | CHROMSCAN | software application, software resource | A statistical based program for association mapping of disease genes. It utilises the Malecot model and the linkage disequilibrium (LD) map for the candidate region to analyse the genotypes derive from large sample of matched cases and controls. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154272 | SCR_013131 | SciCrunch Registry | 2026-09-26 02:19:22 | 2 | |||||||||
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COMPOSITELD Resource Report Resource Website 1+ mentions |
COMPOSITELD (RRID:SCR_013132) | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. Software application to compute composite measures of linkage disequilibrium, their variances and covariances, and statistical tests, for all pairs of alleles from two loci when linkage phase is unkown. An extension of Weir and Cockerham (1989) to apply to multi-allelic loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, r/s-plus | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_009099, nlx_154265, nlx_154192 | SCR_013132 | SciCrunch Registry | R/COMPOSITELD | 2026-09-26 02:19:22 | 6 | ||||||||
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BOREL Resource Report Resource Website 10+ mentions |
BOREL (RRID:SCR_013135) | software application, software resource | Software application for inference of genealogical relationships from genetic data, including sibship inference. | gene, genetic, genomic, c, unix, (dec-unix/..) |
is listed by: Genetic Analysis Software is related to: PANGAEA |
nlx_154197 | http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml | ftp://ftp.u.washington.edu/pub/user-supported/pangaea/PANGAEA/BOREL | SCR_013135 | SciCrunch Registry | 2026-09-26 02:19:22 | 10 | ||||||||
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DTI denoising Resource Report Resource Website |
DTI denoising (RRID:SCR_014102) | software resource, software toolkit | A Matlab package which contains six denoising filters and a noise estimation method for 4D DWI. The package includes nonlocal means, local PCA and Oracle DCT methods. Based on image redundancy and/or sparsity, the proposed filters provide efficient denoising while preserving fine structures. | software toolkit, matlab package, denoise, filter, dwi, image redundancy, imager sparsity |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Bordeaux Segalen University; Bordeaux; France has parent organization: Polytechnic University of Valencia; Valencia; Spain |
Free for non-commercial use | SCR_014102 | SciCrunch Registry | DWIdenoisingPackage, DWI Denoising Package | 2026-09-26 02:19:23 | 0 | |||||||||
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GASSOC Resource Report Resource Website 10+ mentions |
GASSOC (RRID:SCR_013136) | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. Software application for statistical methods for disease and genetic marker associations using cases and their parents. These methods include an extension of the transmission/disequilibrium test (TDT) for multiple marker alleles, as well as additional general tests sensitive to associations that depend on dominant or recessive genetic mechanisms. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, sunos, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154077 | SCR_013136 | SciCrunch Registry | Genetic ASSOCiation analysis software for cases and parent | 2026-09-26 02:19:22 | 13 | ||||||||
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MAPPOP Resource Report Resource Website 1+ mentions |
MAPPOP (RRID:SCR_013490) | MAPPOP | software application, software resource | Software application that selects high resolution mapping subsamples and performs bin mapping (entry from Genetic Analysis Software) | gene, genetic, genomic, matlab, unix, ms-windows, macos, etc | nlx_154467 | SCR_013490 | SciCrunch Registry | 2026-09-26 02:19:23 | 5 | ||||||||||
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PoolHap Resource Report Resource Website |
PoolHap (RRID:SCR_012129) | software application, software resource, standalone software | Software tool for inferring haplotypes from pooled sequencing. Enables to infer strain numbers and haplotype frequencies in silico from sequences of pooled samples. | inferring haplotypes, pooled sequencing, haplotype frequencies, infer strain numbers, pooled samples sequences, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Google Code |
PMID:21264334 | Free, Available for download, Freely available | biotools:poolhap, OMICS_05832 | https://bio.tools/poolhap | SCR_012129 | SciCrunch Registry | Inferring Haplotype frequencies from Pooled sequencing, poolhap2, PoolHap2 | 2026-09-26 02:19:21 | 0 | ||||||
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SNPMSTAT Resource Report Resource Website |
SNPMSTAT (RRID:SCR_013339) | SNPMSTAT | software application, software resource | A command-line program for the statistical analysis of SNP-disease association in case-control/cohort/cross-sectional studies with potentially missing genotype data. SNPMStat allows the user to estimate or test SNP effects and SNP-environment interactions by maximizing the (observed-data) likelihood that properly accounts for phase uncertainty, study design and gene-environment dependence. For SNPs without missing data, the program performs the standard association analysis. For typed SNPs with missing data or untyped SNPs, the program performs the maximum-likelihood analysis. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154647 | SCR_013339 | SciCrunch Registry | SNP Missing data STATistics | 2026-09-26 02:19:22 | 0 | ||||||||
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MECPM Resource Report Resource Website |
MECPM (RRID:SCR_013341) | MECPM | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154070 | SCR_013341 | SciCrunch Registry | Maximum Entropy Conditional Probability Moldeling | 2026-09-26 02:19:23 | 0 |
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