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https://www.licor.com/bio/odyssey-xf/

System includes Odyssey XF Imager and Empiria Studio Software for streamlined image acquisition, organization, and analysis of Western blots. Used for imaging near infrared and enhanced chemiluminescent Western blots, to detect multiple targets on same blot with two channel multiplex fluorescence, and document DNA gels.

Proper citation: LI-COR: Odyssey XF Imaging System (RRID:SCR_022510) Copy   

•   Source: SciCrunch Registry
  

https://CRAN.R-project.org/package=ComplexUpset

Software R package for visualization of intersecting sets. Used for quantitative analysis of sets, their intersections, and aggregates of intersections. Visualizes set intersections in matrix layout and introduces aggregates based on groupings and queries.

Proper citation: ComplexUpset (RRID:SCR_022752) Copy   

•   Source: SciCrunch Registry
  

https://zdock.umassmed.edu/

Web tool as protein docking server, based on rigid body docking programs ZDOCK and M-ZDOCK, to predict structures of protein-protein complexes and symmetric multimers.

Proper citation: ZDOCK Server (RRID:SCR_022518) Copy   

•   Source: SciCrunch Registry
  

http://ireceptor.irmacs.sfu.ca/

Data discovery platform that facilitates curation, analysis and sharing of antibody/B-cell and T-cell receptor repertoires from multiple labs and institutions. Used to increase value of data through sharing with community. Platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories.

Proper citation: iReceptor (RRID:SCR_022294) Copy   

•   Source: SciCrunch Registry
  

https://www.lens.org

Portal to search, analyze and manage patent and scholarly data. Serves global patent and scholarly knowledge as public good to inform science and technology enabled problem solving.

Proper citation: Lens (RRID:SCR_022293) Copy   

•   Source: SciCrunch Registry
  

https://github.com/JinmiaoChenLab/Rphenograph

Software R tool as simple R implementation of PhenoGraph algorithm, which is clustering method designed for high dimensional single cell data analysis.

Proper citation: Rphenograph (RRID:SCR_022603) Copy   

•   Source: SciCrunch Registry
  

https://quality-preclinical-data.eu/about-eqipd/eqipd-quality-system/

Preclinical research quality system that can be applied in public and private sectors to ensure that early drug development research proceeds along structured lines. Used for ensuring generation of reliable preclinical data. Proposes guidance on expectations for quality related measures, defines criteria for adequate processes like performance standards, and provides examples of how such measures can be developed and implemented. EQIPD certification was established by EQIPD consortium and is now managed by its legacy organisation GoEQIPD.

Proper citation: Enhancing Quality In Preclinical Data Quality System (RRID:SCR_022729) Copy   

•   Source: SciCrunch Registry
  

https://web.rniapps.net/netshift/

Web tool for identification of driver nodes between case control association networks.Methodology for understanding driver microbes from healthy and disease microbiome datasets.

Proper citation: NetShift (RRID:SCR_022733) Copy   

•   Source: SciCrunch Registry
  

https://www.fishersci.com/shop/products/cryostar-nx50-cryostat-1/957130

Manual cryostat designed to accommodate needs of routine clinical laboratory by offering form fitting ergonomic design, with optional height adjustment, vacutome and cold D disinfection.

Proper citation: Epredia: CryoStar NX50 Cryostat (RRID:SCR_022732) Copy   

•   Source: SciCrunch Registry
  

https://upset.app/#:~:text=UpSet%20plots%20the%20intersections%20of,is%20part%20of%20an%20intersection.

Software tool to visualize set intersections in matrix layout. Interactive, web based visualization technique designed to analyze set based data. Visualizes both, set intersections and their properties, and elements in dataset. Used for quantitative analysis of data with more than three sets.

Proper citation: UpSet (RRID:SCR_022731) Copy   

•   Source: SciCrunch Registry
  

http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/AnneOTate.cgi

Web search tool to gain overview of set of articles retrieved by PubMed query. Used to support user driven summarization, drill down and browsing of PubMed search results. Value-added PubMed search engine for analysis and text mining.

Proper citation: Anne O'Tate (RRID:SCR_023086) Copy   

•   Source: SciCrunch Registry
  

https://s-risk.be/en

Web tool for assessing exposure and human health risks at contaminated sites. Fate and distribution of chemical pollutants in soil are calculated according to steady-state conservation of mass principles.Risks are calculated by comparing exposures with toxicological reference values and concentrations with toxicological or legal reference concentrations.

Proper citation: S-Risk (RRID:SCR_023085) Copy   

•   Source: SciCrunch Registry
  

http://www.bioconductor.org/packages/2.14/bioc/html/GLAD.html

Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Proper citation: GLAD (RRID:SCR_001284) Copy   

•   Source: SciCrunch Registry
  

https://bioconductor.org/packages/DEP/

Software R package provides integrated analysis workflow for analysis of mass spectrometry proteomics data for differential protein expression or differential enrichment.

Proper citation: Differential Enrichment analysis of Proteomics data (RRID:SCR_023090) Copy   

•   Source: SciCrunch Registry
  

http://purl.bioontology.org/ontology/HC

An ontology for courtship behavior of the spider Habronattus californicus. A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms.

Proper citation: Habronattus Courtship Ontology (RRID:SCR_010334) Copy   

•   Source: SciCrunch Registry
  

https://github.com/spoonsso/dannce

Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking.

Proper citation: DANNCE (RRID:SCR_023061) Copy   

•   Source: SciCrunch Registry
  

http://purl.bioontology.org/ontology/DCO

Ontology that is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS).

Proper citation: Dispedia Core Ontology (RRID:SCR_010309) Copy   

•   Source: SciCrunch Registry
  

https://www.radiantviewer.com/products/radiant-dicom-viewer-standard/

Software tool as Digital Imaging and Communications in Medicine (DICOM) viewer for medical images.

Proper citation: RadiAnt DICOM Viewer (RRID:SCR_022894) Copy   

•   Source: SciCrunch Registry
  

http://purl.bioontology.org/ontology/SWEET

A mature foundational ontology developed at the NASA Jet Propulsion Laboratory, currently containing over 6000 concepts organized in 200 ontologies represented in OWL, whose top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). SWEET is now officially under the governance of the ESIP foundation.

Proper citation: Semantic Web for Earth and Environment Technology Ontology (RRID:SCR_010426) Copy   

•   Source: SciCrunch Registry
  

http://purl.bioontology.org/ontology/CHEMBIO

Ontology for Systems Chemical Biology and Chemogenomics

Proper citation: Systems Chemical Biology and Chemogenomics Ontology (RRID:SCR_003928) Copy   

•   Source: SciCrunch Registry