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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Pi-based Remote Acquisition Technology for Motion Capture project Resource Report Resource Website |
Pi-based Remote Acquisition Technology for Motion Capture project (RRID:SCR_022325) | PiRATeMC | data or information resource, instrument resource, portal, project portal | Open source video recording system for acquiring video data that is scalable, flexible, and affordable.Utilizes Raspberry Pi (RPi) miniature computer and 8-megapixel Camera Board that allows for greater manipulation of recording parameters. System may be accessed on GitHub. | OpenBehavior, Instrument, behavior measurement, video analysis, realtime recording and analysis, video recording system, acquiring video data, open source recording system |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture |
DOI:10.1101/2021.07.23.453577 | Free, Freely available | SCR_022325 | SciCrunch Registry | Pi-based Remote Acquisition Technology for Motion Capture | 2026-09-26 02:17:19 | 0 | |||||||
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IBM SPSS Amos Resource Report Resource Website 10+ mentions |
IBM SPSS Amos (RRID:SCR_022686) | data analysis software, data processing software, software application, software resource | Structural equation modeling software helping support your research and theories by extending standard multivariate analysis methods, including regression, factor analysis, correlation and analysis of variance. | regression, factor analysis, correlation and analysis of variance | is related to: IBM SPSS Statistics | Restricted | SCR_022686 | SciCrunch Registry | SPSS Amos | 2026-09-26 02:17:21 | 10 | |||||||||
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Raspberry Pi based auditory stimulus generator Resource Report Resource Website |
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) | data or information resource, instrument resource, portal, project portal | Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. | OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0524-20.2021 | Free, Freely available | https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 | SCR_022343 | SciCrunch Registry | Raspberry Pi based auditory stimulus generator project | 2026-09-26 02:17:19 | 0 | |||||||
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Meta Essentials Resource Report Resource Website 10+ mentions |
Meta Essentials (RRID:SCR_022464) | data analysis software, data processing software, software application, software resource | Software tool for meta analysis. Facilitates integration and synthesis of effect sizes from different studies. Consists of set of workbooks designed for Microsoft Excel that automatically produces all required statistics, tables, figures, and more. | meta analysis, relationship between independent and dependent variable analysis | DOI:10.1002/jrsm.1260 | Free, Available for download, Freely available | SCR_022464 | SciCrunch Registry | Meta-Essentials | 2026-09-26 02:17:20 | 35 | |||||||||
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SipperViz Resource Report Resource Website |
SipperViz (RRID:SCR_022463) | data processing software, data visualization software, software application, software resource | Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data. | graphing measures, rodents liquid ingestion, Sippers, visualizing Sipper data, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home Cage Rodent Two bottle Choice Test project |
Free, Available for download, Freely available | SCR_022463 | SciCrunch Registry | 2026-09-26 02:17:20 | 0 | ||||||||||
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GE: Phoenix Nanotom S system Resource Report Resource Website 1+ mentions |
GE: Phoenix Nanotom S system (RRID:SCR_022582) | instrument resource | Nanofocus computed tomography system for applications in material science, precision injection moulding, micromechanics, electronics geology and biology. System includes nanofocus X-ray tube, precision mechanics and advanced software modules. Used for range of 3D CT applications., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Phoenix nanotoms, nano ct system, nanofocus computed tomography, instrument, equipment, USEDit |
is listed by: MfN Berlin Micro-CT Laboratory Core Facility is related to: USEDit |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_022582 | SciCrunch Registry | Phoenix Nanotome S | 2026-09-26 02:17:20 | 8 | |||||||||
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Hexamer Additive Linear Resource Report Resource Website 1+ mentions |
Hexamer Additive Linear (RRID:SCR_022581) | HAL | data access protocol, software resource, web service | Web tool to predict effects of sequence variants on alternative splicing. Predicts changes in alternative 5' splice events as well as skipped exon events. | sequence variants on alternative splicing prediction, cassete exon, skipped exon events, changes in alternative 5' splice events, | Burroughs Wellcome Career Award at the Scientific Interface ; National Science Foundation Career Award |
DOI:10.1016/j.cell.2015.09.054 | Free, Freely available | SCR_022581 | SciCrunch Registry | 2026-09-26 02:17:20 | 1 | ||||||||
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Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | data analysis software, data processing software, software application, software resource | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | SciCrunch Registry | ABA project | 2026-09-26 02:17:19 | 0 | ||||||
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FlyBrainLab Resource Report Resource Website |
FlyBrainLab (RRID:SCR_022337) | data analysis software, data processing software, data visualization software, software application, software resource | Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data. | OpenBehavior, functional logic in Drosophila brain, fruit fly brain data, 3D exploration and visualization of fruit fly brain data, creation of executable circuits |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.62362 | Free, Available for download, Freely available | https://github.com/FlyBrainLab/FlyBrainLab, https://flybrainlab.fruitflybrain.org/ | SCR_022337 | SciCrunch Registry | 2026-09-26 02:17:19 | 0 | ||||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | data analysis software, data processing software, software application, software resource | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | SciCrunch Registry | 2026-09-26 02:17:19 | 0 | ||||||||
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VirtualPlant Resource Report Resource Website 1+ mentions |
VirtualPlant (RRID:SCR_022576) | data access protocol, software resource, web service | Software platform to support systems biology research. Integrates genomic data and provides visualization and analysis tools for exploration of genomic data. Provides tools to generate biological hypotheses. | genomic data integration, support systems biology, genomic data visualization and analysis | FONDECYT ; Grape Genomics ; Millennium Nucleus for Plant Functional Genomics ; NIGMS 5F32GM75600; NIGMS R01 GM 032877; NSF DBI 0445666; NSF IOB 0519985; NSF MCB–0209754 |
PMID:20007449 | Free, Available for download, Freely available | SCR_022576 | SciCrunch Registry | VirtualPlant 1.3 | 2026-09-26 02:17:20 | 3 | ||||||||
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Polysolver Resource Report Resource Website 10+ mentions |
Polysolver (RRID:SCR_022278) | data analysis software, data processing software, software application, software resource | Software tool for HLA typing based on whole exome sequencing data and infers alleles for three major MHC class I genes. Enables accurate inference of germline alleles of class I HLA-A, B and C genes and subsequent detection of mutations in these genes using inferred alleles as reference. | HLA typing, whole exome sequencing data, accurate inference of germline alleles, high precision HLA-typing, alleles of class I HLA-A, B and C genes, detection of mutations, inferred alleles | has parent organization: Broad Institute | AACR ; Blavatnik Family Foundation ; NCI 1R01CA155010; NHLBI 1RO1HL103532 |
PMID:26372948 | Free, Available for download, Freely available | SCR_022278 | SciCrunch Registry | POLYmorphic loci reSOLVER, POLYSOLVER | 2026-09-26 02:17:18 | 33 | |||||||
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Plant Cataloging Workflow Resource Report Resource Website 1+ mentions |
Plant Cataloging Workflow (RRID:SCR_022276) | data processing software, software application, software resource, workflow software | Software workflow for automatized spatio temporal plant positioning based on UAV images. | Cataloging, automatized spatio temporal plant positioning, UAV images | DOI:10.48550/arXiv.2201.02885 | Free, Available for download, Freely available | SCR_022276 | SciCrunch Registry | 2026-09-26 02:17:19 | 1 | ||||||||||
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SigCom LINCS Resource Report Resource Website 1+ mentions |
SigCom LINCS (RRID:SCR_022275) | data access protocol, software resource, web service | Web server that serves over million gene expression signatures processed, analyzed, and visualized from LINCS, GTEx, and GEO. Data and metadata search engine for gene expression signatures. | FAIR data, data and metadata search engine, gene expression signatures, gene expression signature processed, analyzed, and visualized, LINCS, GTEx, GEO, gene expression signatures, | NHLBI U54HL127624; NIDDK R01DK131525; NIH Office of the Director OT2OD030160 |
PMID:35524556 | Free, Freely available | https://github.com/MaayanLab/sigcom-lincs | SCR_022275 | SciCrunch Registry | SigCom Library of Integrated Network-based Cellular Signatures | 2026-09-26 02:17:18 | 8 | |||||||
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KineFold Resource Report Resource Website 1+ mentions |
KineFold (RRID:SCR_022273) | data access protocol, software resource, web service | Web service for RNA/DNA folding predictions including pseudoknots and entangled helices.Used for prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. | RNA secondary structure, minimum free energy prediction, RNA/DNA folding predictions, pseudoknots and entangled helices, pseudoknots in RNA structures, clustered stochastic simulations | has parent organization: Curie Institute; Paris; France | French Ministry of Higher Education | PMID:14676318 | Free, Freely available | SCR_022273 | SciCrunch Registry | 2026-09-26 02:17:18 | 4 | ||||||||
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Modular LED Displays project Resource Report Resource Website |
Modular LED Displays project (RRID:SCR_022704) | data or information resource, instrument resource, portal, project portal | Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability. | Instrument, OpenBehavior, fly vision, insects, behavioral neuroscience, customized display system, small animal vision experiments |
is listed by: OpenBehavior has parent organization: Howard Hughes Medical Institute |
DOI:10.1101/2022.08.02.502550 | Free, Freely available | https://reiserlab.github.io/Modular-LED-Display/, https://github.com/reiserlab/Modular-LED-Display | SCR_022704 | SciCrunch Registry | Modular LED Displays | 2026-09-26 02:17:21 | 0 | |||||||
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HEXplorer score Resource Report Resource Website 1+ mentions |
HEXplorer score (RRID:SCR_022269) | data access protocol, software resource, web service | Web tool for genomic HEXploring allows landscaping of novel potential splicing regulatory elements. Allows landscaping of splicing regulatory regions, provides quantitative measure of mutation effects on splice enhancing and silencing properties and permitts calculation of mutationally most effective nucleotide. | Predicts splicing potential, splicing regulatory regions, mutation effects on splice enhancing and silencing properties | German Research Foundation | DOI:10.1093/nar/gku736 | Free, Freely available | SCR_022269 | SciCrunch Registry | 2026-09-26 02:17:18 | 6 | |||||||||
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%MinMax Resource Report Resource Website 1+ mentions |
%MinMax (RRID:SCR_022268) | data access protocol, software resource, web service | Software tool for calculating and comparing synonymous codon usage and its impact on protein folding. Used to harmonize codon usage frequencies for heterologous gene expression. Codon usage calculator that evaluates relative usage frequencies of synonymous codons used to encode protein sequence of interest and compares these results to rigorous null mode.Evaluates synonymous codon usage patterns for any coding sequence from any fully sequenced genome. | Calculating and comparing synonymous codon usage, impact on protein folding, harmonize codon usage frequencies, heterologous gene expression, codon usage calculator, encode protein sequence | has parent organization: University of Notre Dame; Indiana; USA | PMID:29090506 | Free, Freely available | SCR_022268 | SciCrunch Registry | 2026-09-26 02:17:18 | 2 | |||||||||
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Chemotaxis and Migration Tool Resource Report Resource Website 1+ mentions |
Chemotaxis and Migration Tool (RRID:SCR_022708) | data analysis software, data processing software, software application, software resource | Software tool for data analysis from time stack chemotaxis experiments. Based on NIH ImageJ image processing system. | time stack chemotaxis experiments data, time stack chemotaxis experiments analysis, chemotaxis experiments graphs, statistical analysis | Free, Available for download, Freely available | SCR_022708 | SciCrunch Registry | Chemotaxis and Migration Tool version 2.0 | 2026-09-26 02:17:21 | 7 | ||||||||||
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SpiecEasi Resource Report Resource Website 10+ mentions |
SpiecEasi (RRID:SCR_022712) | SpiecEasi | data analysis software, data processing software, software application, software resource | Software R package for microbiome network analysis. Used for inference of microbial ecological networks from amplicon sequencing datasets. Combines data transformations developed for compositional data analysis with graphical model inference framework that assumes underlying ecological association network is sparse. | microbiome network analysis, amplicon sequencing datasets, microbial ecological networks inference | NIAID AI007180; NIDDK DK103358; NIGMS GM63270; Simons Foundation |
PMID:25950956 | Free, Available for download, Freely available | SCR_022712 | SciCrunch Registry | SParse InversE Covariance Estimation for Ecological Association Inference | 2026-09-26 02:17:21 | 20 |
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