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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GRR Resource Report Resource Website |
GRR (RRID:SCR_013496) | GRR | software application, software resource | A graphical tool designed for detection of errors in relationship specification in general pedigrees by use of genome scan marker data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows | is listed by: Genetic Analysis Software | nlx_154365 | SCR_013496 | Graphical Representation of Relationships | 2026-09-12 01:02:49 | 0 | ||||||||
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PEDFIDDLER Resource Report Resource Website |
PEDFIDDLER (RRID:SCR_013376) | PEDFIDDLER | software application, software resource | Software suite of six programs that can be used as a stand-alone extension of the pedigree drawing facilities found in the publicly available version of PEDPACK. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, unix, (osf1, and solaris 2.7, alphalinux), ms-windows, (xp home/win32/win95), linux | is listed by: Genetic Analysis Software | nlx_154517 | SCR_013376 | PEDPACK in PANGAEA | 2026-09-12 01:02:49 | 0 | ||||||||
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VG Resource Report Resource Website 1+ mentions |
VG (RRID:SCR_013378) | VG | software application, software resource | Software program that presents complete raw datasets of individuals'' genotype data using a display format with samples as rows and polymorphisms as columns. The color code is: (1) blue: homozygous genotype for the common allele; (2) red: heterozygous genotype; (3) yellow: homozygous genotype for the rare allele; and (4) grey: missing data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154688 | SCR_013378 | Visual Genotype | 2026-09-12 01:02:49 | 3 | ||||||||
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TAGIMPUTE Resource Report Resource Website |
TAGIMPUTE (RRID:SCR_013338) | software application, software resource | A command-line program for the imputation of untyped SNPs. tagIMPUTE is based on a few flanking SNPs that can optimally predict the SNP under imputation. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154670 | SCR_013338 | TAGging-snp based IMPUTATE | 2026-09-12 01:02:48 | 0 | |||||||||
|
SNP HITLINK Resource Report Resource Website |
SNP HITLINK (RRID:SCR_013340) | SNP HITLINK | software application, software resource | Software program providing a useful pipeline to directly connect SNP data and linkage analysis program. SNP HiTLink currently supports the data from SNP chips provided by Affymetrix (Mapping 100k/500k array set, Genome-Wide Human SNP array 5.0/6.0) and Illumina (recently supported), carrying out typical linkage analysis programs of MLINK (FASTLINK/ LINKAGE package), Superlink, Merlin and Allegro. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154644, biotools:snp_hitlink | https://bio.tools/snp_hitlink | SCR_013340 | SNP HIgh-Throughput LINKage analysis system | 2026-09-12 01:02:48 | 0 | |||||||
|
SGS Resource Report Resource Website |
SGS (RRID:SCR_013460) | SGS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, visualbasic, ms-windows, (95/98/00/nt) | is listed by: Genetic Analysis Software | nlx_154054 | SCR_013460 | 2026-09-12 01:02:49 | 0 | |||||||||
|
AUTOSCAN Resource Report Resource Website 10+ mentions |
AUTOSCAN (RRID:SCR_013510) | AUTOSCAN | software application, software resource | A helper program to automate the tedious process of the creation of input files from genotype data of genome-wide scans (entry from Genetic Analysis Software) | gene, genetic, genomic, c and unix-shell (bourne), unix, (solaris/dec-unix) | is listed by: Genetic Analysis Software | nlx_154235 | SCR_013510 | 2026-09-12 01:02:49 | 20 | |||||||||
|
HAPLO 2 Resource Report Resource Website 1+ mentions |
HAPLO 2 (RRID:SCR_009059) | HAPLO 2 | software application, software resource | Software application that estimates frequencies of multi-site haplotypes using the EM algorithm (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, dec vax | is listed by: Genetic Analysis Software | nlx_154040 | SCR_009059 | 2026-09-12 01:02:39 | 1 | |||||||||
|
UNPHASED Resource Report Resource Website 100+ mentions |
UNPHASED (RRID:SCR_009056) | UNPHASED | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A suite of programs for association analysis of multilocus haplotypes from unphased genotype data. These include TDTPHASE for case-parent trios, COCAPHASE for case/control data, QTPHASE for quantitative traits in unrelateds, PDTPHASE for general pedigrees, and QPDTPHASE for quantitative traits in general pedigrees. Features include global and individual haplotype tests, main effects and conditional tests, grouping of rare haplotypes, pairwise comparisons of haplotype risk, flexible permutation procedures and calculation of LD measures. | gene, genetic, genomic, c++, java, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | PMID:10739137 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154037 | http://www.mrc-bsu.cam.ac.uk/personal/frank/software/unphased/ | SCR_009056 | 2026-09-12 01:02:39 | 125 | ||||||
|
POWER Resource Report Resource Website 500+ mentions |
POWER (RRID:SCR_009057) | POWER | software application, software resource | Windows-based program for computation of sample size and power for binary outcome studies (case-control and cohort studies) based on a logistic-like regression model with one covariate or two covariates (e.g., gene-exposure interactions). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window | is listed by: Genetic Analysis Software | nlx_154038 | http://dceg.cancer.gov/POWER/ | SCR_009057 | 2026-09-12 01:02:39 | 602 | ||||||||
|
JENTI Resource Report Resource Website |
JENTI (RRID:SCR_009053) | JENTI | software application, software resource | An efficient tool for mining complex inbred genealogies that identify clusters of individuals sharing the same expected amount of relatedness is described. Additionally it allows for the reconstruction of sub-pedigrees suitable for genetic mapping in a systematic way. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154033 | SCR_009053 | 2026-09-12 01:02:39 | 0 | |||||||||
|
COMBIN Resource Report Resource Website |
COMBIN (RRID:SCR_009050) | COMBIN | software application, software resource | Software application designed for the construction of highly saturated linkage maps, based on BC1, DH, Radiation Hybrid or CP (CrossPollinators) data sets. F2 is not supported. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic 5, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154025 | http://www.dpw.wau.nl/pv/pub/combin/ | SCR_009050 | 2026-09-12 01:02:39 | 0 | ||||||||
|
ARLEQUIN Resource Report Resource Website 5000+ mentions |
ARLEQUIN (RRID:SCR_009051) | ARLEQUIN | software application, software resource | An exploratory population genetics software environment able to handle large samples of molecular data (RFLPs, DNA sequences, microsatellites), while retaining the capacity of analyzing conventional genetic data (standard multi-locus data or mere allele frequency data). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (95/98/nt/2000/xp) | is listed by: Genetic Analysis Software | nlx_154029 | SCR_009051 | this software is about the study of genetic polymorphism.), a character of the Italian Commedia dell''Arte. He has many aspects, but can switch among them very easily according to needs and necessities. Similarly, (French translation of Arlecchino | 2026-09-12 01:02:39 | 5656 | ||||||||
|
GRONLOD Resource Report Resource Website |
GRONLOD (RRID:SCR_009049) | GRONLOD | software application, software resource | Conversion programs from LINKAGE files are available. The program uses peeling and can employ nested conditioning. There is an automatic peeling program that will unravel (multiple) loops. Alleles do not need to be recoded, so real allele sizes can be used. Genotype probabilities for a chosen person can be calculated for purposes of genetic risk calculation. Later versions include one for calculations using linked markers and mutations and mosaicism, made by Martin van der Meulen. A symbolic versions will generate the formula to compute the pedigree likelihood. (entry from Genetic Analysis Software) | gene, genetic, genomic, prolog, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154024 | SCR_009049 | GRONingen university LOR score calculation | 2026-09-12 01:02:39 | 0 | ||||||||
|
SNP ASSISTANT Resource Report Resource Website |
SNP ASSISTANT (RRID:SCR_009048) | SNP ASSISTANT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for SNP data managing, import & export from linkage format, data validation, pairwise LD calculation and visualisation, case-control and TDT tests, visual comparison of two datasets, relationships testing. Suitable for large projects. | gene, genetic, genomic, c++, ms-windows, (95 and newer) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154023 | SCR_009048 | 2026-09-12 01:02:39 | 0 | ||||||||
|
PEDIGREEQUERY Resource Report Resource Website 1+ mentions |
PEDIGREEQUERY (RRID:SCR_009041) | PEDIGREEQUERY | software application, software resource | Software application that allows drawing pedigrees with a difficult structure, those containing consanguinity loops, and those individuals with multiple mates or several related families (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154007, biotools:pedcut | https://bio.tools/pedcut | SCR_009041 | 2026-09-12 01:02:39 | 1 | ||||||||
|
PATH Resource Report Resource Website 100+ mentions |
PATH (RRID:SCR_009042) | PATH | software application, software resource | Web application to investigate gene-gene interactions in genetic association studies designed to: 1. Interface your SNP data with biological information from several online bioinformatics databases. 2. Generate biologically plausible hypotheses for testing gene-gene interactions. 3. Select a subset of SNPs and conduct SNP-SNP interaction tests. 4. Store analysis results. 5. Explore analysis results through interactive plots and summary tables. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-windows, linux, FASEB list | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154015 | SCR_009042 | 2026-09-12 01:02:39 | 253 | ||||||||
|
FASTSLINK Resource Report Resource Website 10+ mentions |
FASTSLINK (RRID:SCR_008664) | FASTSLINK | software application, software resource | Software application that is a faster version of SLINK (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: SLINK is related to: SUP |
nlx_154312, biotools:snpcaller | https://bio.tools/snpcaller | SCR_008664 | faster SLINK | 2026-09-12 01:02:38 | 12 | |||||||
|
GENEPI.JAR Resource Report Resource Website |
GENEPI.JAR (RRID:SCR_008782) | GENEPI.JAR | software application, software resource | A set of Java programs for genetic epidemiology analysis (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154336 | http://bioinformatics.med.utah.edu/~alun/software/index.html | SCR_008782 | JPSGCS | 2026-09-12 01:02:38 | 0 | |||||||
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HAPLOVISUAL Resource Report Resource Website |
HAPLOVISUAL (RRID:SCR_009073) | HAPLOVISUAL | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154068 | SCR_009073 | 2026-09-12 01:02:39 | 0 |
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