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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://github.com/SantamariaLab/NeuroManager
Simulation submission manager for computational neuroscience. It manages simulation processing, file transfers, and job submission for a heterogeneous mixture of standalone server, cluster, and cloud servers.
Proper citation: NeuroManager (RRID:SCR_015559) Copy
A collection of big data analytics tools. FlashX performs data analytics in the form of graphs and matrices and utilize solid-state drives (SSDs) to scale to large datasets in a single machine. It has three main components: FlashGraph, FlashMatrix, and FlashR. FlashGraph is a general-purpose programming framework with a vertex-centric programming interface for large-scale graph analysis. FlashMatrix is a matrix computation engine that provides a small set of generalized matrix operations to express varieties of data mining and machine learning algorithms. FlashR is an extension of the R programming framework to process datasets at a scale of terabytes with the speed of optimized parallel C code.
Proper citation: FlashX (RRID:SCR_014536) Copy
https://github.com/frothga/n2a
An object-oriented language for modeling large-scale neural systems, along with an IDE for writing and simulating models. N2A represents neural systems in a parts-relations framework combined with dynamics where each part has as set of equations that define its state variables and how they evolve over time. Each part is a pattern for a population of instances, and each instance has its own unique copy of the state variables.
Proper citation: N2A (RRID:SCR_014702) Copy
https://github.com/StateSpaceModels
An open source library built to reduce technical friction and help modelers share their work. Models within SSM can be used for inference of time-series analysis.
Proper citation: State Space Models (RRID:SCR_014647) Copy
https://github.com/NeuroBox3D/AnaMorph
Framework for creating 3D neuronal morphologies from point/diameter descriptions.
Proper citation: AnaMorph (RRID:SCR_015012) Copy
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