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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Digestive Disease Centers Resource Report Resource Website 1+ mentions |
Digestive Disease Centers (RRID:SCR_015212) | data or information resource, resource, disease-related portal, topical portal, organization portal, portal | Center of collaborating research centers working on the research of digestive and liver-related diseases. Each center focuses on etiology, treatment, and prevention of digestive and/or liver diseases. | digestive diseases, liver diseases |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers is affiliated with: Center for the Study of Inflammatory Bowel Disease is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Marion Bessin Liver Research Center has organization facet: Texas Medical Center Digestive Diseases Center has organization facet: Cincinnati Digestive Health Center has organization facet: Center for the Study of Inflammatory Bowel Disease has organization facet: Mayo Clinic Center for Cell Signaling in Gastroenterology has organization facet: CURE - Digestive Diseases Research Center has organization facet: Cleveland Digestive Diseases Research Core Center has organization facet: USC Liver Transplant Program and Center for Liver Disease has organization facet: Vanderbilt Digestive Disease Research Center has organization facet: Washington University Digestive Diseases Research Core Center has organization facet: Yale Liver Center has organization facet: Emory Epithelial Pathobiology Research Development Center has organization facet: Mucosal HIV and Immunobiology Center has organization facet: Harvard Digestive Disease Center has organization facet: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center has organization facet: UCSF Liver Center has organization facet: University of Chicago Digestive Diseases Research Core Center has organization facet: University of Michigan Center for Gastrointestinal Research has organization facet: University of North Carolina Center for Gastrointestinal Biology and Disease has organization facet: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases |
digestive disease | NIDDK P30RFA-DK17-001 | Available to the research community | https://www.niddk.nih.gov/research-funding/research-programs/digestive-disease-centers | SCR_015212 | 2026-08-18 09:44:18 | 1 | |||||||
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Cystic Fibrosis Research and Translation Centers Resource Report Resource Website |
Cystic Fibrosis Research and Translation Centers (RRID:SCR_015383) | data or information resource, resource, disease-related portal, topical portal, organization portal, portal | Research centers that provide support for basic, preclinical, and clinical research efforts to advance scientific knowledge and new therapies for cystic fibrosis. | cystic fibrosis, research, collaboration |
is listed by: NIDDK Information Network (dkNET) is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center has organization facet: Gregory Fleming James Cystic Fibrosis Research Center has organization facet: Cystic Fibrosis Center - University of California San Francisco has organization facet: Cystic Fibrosis Center University of Pittsburgh has organization facet: Cystic Fibrosis Center - University of Washington has organization facet: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis has organization facet: University of Iowa Center for Gene Therapy |
Cystic Fibrosis | NIDDK RFA-DK17-007 | Available to the research community | SCR_015383 | 2026-08-18 09:44:03 | 0 | ||||||||
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O'Brien Urology Centers Resource Report Resource Website |
O'Brien Urology Centers (RRID:SCR_015473) | data or information resource, resource, disease-related portal, topical portal, organization portal, portal | Program that aims to enhance the effectiveness of research related to noncancerous urologic dysfunction by encouraging collaboration amongst investigators. | urologic dysfunction, collaboration, urology research portal, urology portal |
is listed by: NIDDK Information Network (dkNET) is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Mayo Clinic O'Brien Urology Center has organization facet: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston has organization facet: Columbia University George M. O'Brien Urology Center |
urologic dysfunction | NIDDK RFA-DK16-013 | Available to the research community | SCR_015473 | 2026-08-18 09:44:06 | 0 | ||||||||
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MGnify Resource Report Resource Website 50+ mentions |
MGnify (RRID:SCR_016429) | data or information resource, storage service resource, data repository, service resource, portal | Portal for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. Provides functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive (ENA).Microbiome analysis resource in 2020. | analysis, exploration, metagenomic, metatranscriptomic, amplicon, assembly, data, sequence, ENA, microbial, population, environment, bio.tools |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Debian is listed by: bio.tools is related to: NIDDK Information Network (dkNET) |
the Biotechnology and Biological Sciences Research Council (BBSRC) BBM0117551; the Biotechnology and Biological Sciences Research Council (BBSRC) BBN0183541; the European Commission within the Research Infrastructures programme of Horizon 2020 676559; InnovateUK 102513; Research Councils UK (RCUK) ; EMBL ; the Biotechnology and Biological Sciences Research Council BBI02612X1; the Biotechnology and Biological Sciences Research Council BBM0117551; EU Seventh Framework Programme for Research MICROB3 |
PMID:31696235 | Free, Freely available, Training online available | r3d100011192, biotools:MGnify | https://bio.tools/MGnify, https://doi.org/10.17616/R34W68 | SCR_016429 | , MGnify, EBI Metagenomics | 2026-08-18 09:44:39 | 74 | |||||
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FLOWRepository Resource Report Resource Website 100+ mentions |
FLOWRepository (RRID:SCR_013779) | data or information resource, storage service resource, data repository, database, service resource | A database of flow cytometry experiments where users can query and download data collected and annotated according to the MIFlowCyt data standard. | cytometry, database, flow cytometry experiment, miflowcyt, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: Cytobank is related to: Cytobank |
Wallace H. Coulter Foundation ; International Society for Advancement of Cytometry |
PMID:22887982 | Public, Available to the research community | r3d100011280 | SCR_013779 | FlowRepository, FLOW Repository | 2026-08-18 09:43:53 | 313 | ||||||
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Mass spectrometry Interactive Virtual Environment (MassIVE) Resource Report Resource Website 1000+ mentions |
Mass spectrometry Interactive Virtual Environment (MassIVE) (RRID:SCR_013665) | MassIVE | data or information resource, storage service resource, data repository, database, service resource | Mass spectrometry Interactive Virtual Environment (MassIVE) is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. Data repository for proteomics data. | Proteomics, Mass Spec, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: ProteomeXchange has parent organization: University of California at San Diego; California; USA |
r3d100012858 | https://massive.ucsd.edu/ | SCR_013665 | Mass spectrometry Interactive Virtual Environment (MassIVE), MassIVE, Mass spectrometry Interactive Virtual Environment | 2026-08-18 09:44:03 | 1409 | |||||||
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Metabolomics Workbench Resource Report Resource Website 500+ mentions |
Metabolomics Workbench (RRID:SCR_013794) | MetWB | data or information resource, storage service resource, data repository, service resource | Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops. | repository, metabolomics, database, funding, training, protocol, bio.tools, FASEB list, DRKB |
is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: NIH Metabolomics program lists: MetaCore lists: JMP lists: STATISTICA lists: Spotfire lists: Coordination of Standards in Metabolomics lists: MetaboLights lists: MetabolomeXchange lists: Metabolomics Society lists: Birmingham Metabolite Library lists: Glycan Mass Spectral Database (GMDB) lists: Mass Spectral Library lists: mzCloud lists: MetabolomeExpress lists: Spectral Database System (SDBS) lists: CTSgetR lists: Hierarchical Clustering lists: imDEV lists: Linear Discriminant Analysis lists: Principal Components Analysis lists: mwtabR lists: 3Omics lists: ACD/ NMR Processor lists: NIST Mass Spectrometry Data Center lists: Chemical Translation Service lists: Chenomx NMR Suite lists: DeviumWeb lists: MBRole lists: MetaMapR lists: MetaP lists: Metscape lists: SIMCA lists: TeachingDemos is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is listed by: re3data.org is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: Metabolomics Workbench Metabolite Database |
NIH ; NIDDK DK141185 |
Free, Freely available | biotools:Metabolomics_Workbench, r3d100012314 | https://bio.tools/Metabolomics_Workbench, https://api.datacite.org/dois?prefix=10.21228 | SCR_013794 | Metabolomics Workbench, MetWB, UCSD Metabolomics Workbench, Metabolomics Workbench (MetWB) | 2026-08-18 09:43:53 | 666 | |||||
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Diabetes Research Centers Resource Report Resource Website 1+ mentions |
Diabetes Research Centers (RRID:SCR_014535) | data or information resource, resource, disease-related portal, topical portal, organization portal, portal | Diabetes Research Centers (DRC) is an integrated program of diabetes, endocrinology and metabolism research. | diabetes research, endocrinology research, metabolism research |
lists: Preventing Early Renal Loss in Diabetes (PERL) lists: Clinical Trials in Organ Transplantation (CTOT) lists: Stanford Diabetes Research Center lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Digestive Disease Centers lists: Drug-Induced Liver Injury Network lists: Nutrition and Obesity Research Centers lists: Chronic Renal Insufficiency Cohort Study lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Diabetes Prevention Type 1 lists: Monogenic Diabetes Registry lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin lists: National Glycohemoglobin Standardization Program is listed by: NIDDK Information Network (dkNET) is affiliated with: University of California at San Diego; California; USA is affiliated with: University of California at Los Angeles; California; USA is affiliated with: University of California at San Francisco; California; USA is affiliated with: Columbia University; New York; USA is affiliated with: Albert Einstein College of Medicine; New York; USA is affiliated with: Indiana University; Indiana; USA is affiliated with: Johns Hopkins University; Maryland; USA is affiliated with: University of Maryland; Maryland; USA is affiliated with: Joslin Diabetes Center is affiliated with: University of Alabama at Birmingham; Alabama; USA is affiliated with: University of Michigan; Ann Arbor; USA is affiliated with: University of Pennsylvania; Philadelphia; USA is affiliated with: University of Washington; Seattle; USA is affiliated with: Vanderbilt University; Tennessee; USA is affiliated with: Washington University in St. Louis; Missouri; USA is affiliated with: Yale University; Connecticut; USA is affiliated with: Yale Diabetes Research Center is affiliated with: University of Washington Diabetes Research Center is affiliated with: Penn Diabetes Research Center is affiliated with: University of Chicago Diabetes Research and Training Center is affiliated with: University of Alabama at Birmingham Diabetes Research Center is affiliated with: University of California San Francisco Diabetes Research Center is affiliated with: University of California San Diego - University of California Los Angeles Diabetes Research Center is affiliated with: Indiana Diabetes Research Center is affiliated with: Columbia Diabetes Research Center is affiliated with: Einstein-Mount Sinai Diabetes Research Center is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Joslin Diabetes Center has organization facet: Yale Diabetes Research Center has organization facet: University of Washington Diabetes Research Center has organization facet: Penn Diabetes Research Center has organization facet: University of Chicago Diabetes Research and Training Center has organization facet: Michigan Diabetes Research Center has organization facet: University of Alabama at Birmingham Diabetes Research Center has organization facet: University of California San Francisco Diabetes Research Center has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center has organization facet: Indiana Diabetes Research Center has organization facet: Columbia Diabetes Research Center has organization facet: Einstein-Mount Sinai Diabetes Research Center has organization facet: Stanford Diabetes Research Center has organization facet: Boston Area Diabetes Endocrinology Research Center has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center has organization facet: Vanderbilt Diabetes Research and Training Center has organization facet: Washington University School of Medicine Diabetes Research Center has organization facet: Center for American Indian and Alaska Native Diabetes Translational Research |
Type 1 diabetes, Type 2 diabetes, Diabetes | Available to the research community | SCR_014535 | 2026-08-18 09:44:09 | 1 | |||||||||
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Cambridge Crystallographic Data Centre (CCDC) Resource Report Resource Website 500+ mentions |
Cambridge Crystallographic Data Centre (CCDC) (RRID:SCR_014707) | CCDC | storage service resource, data repository, service resource | Institution which compiles and distributes small molecule crystallography data from the Cambridge Structural Database (CSD), a repository of experimentally determined organic and metal-organic crystal structures. CCDC also produces associated knowledge-based application software for structural chemists. Structures deposited with CCDC are made publically available for download at the point of publication or at consent from the depositor. | crystallography, institutions, small molecule crystallography, crystal structure, organic crystal structure, metal-organic crystal structure, software |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has parent organization: University of Cambridge; Cambridge; United Kingdom |
Publicly available | SCR_014707 | CCDC, Cambridge Crystallographic Data Center, Cambridge Crystallographic Data Centre (CCDC) | 2026-08-18 09:44:11 | 842 | ||||||||
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Zebrafish Information Network (ZFIN) Resource Report Resource Website 500+ mentions |
Zebrafish Information Network (ZFIN) (RRID:SCR_002560) | ZFIN | database, data or information resource | Model organism database that serves as central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. Data represented are derived from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. Data formats include text, images and graphical representations.Serves as primary community database resource for laboratory use of zebrafish. Developed and supports integrated zebrafish genetic, genomic, developmental and physiological information and link this information extensively to corresponding data in other model organism and human databases. | expression, gene, anatomy, development, disease, genomic, model, molecular, mutant, neuronal, organism, phenotype, physiological, synteny, zebrafish, gene expression, genome sequence, molecular neuroanatomy resource, genotype, anatomical structure, publication, genome, image collection, gold standard, bio.tools, FASEB list, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: Morpholino Database is used by: Integrated Animals is used by: NIH Heal Project is recommended by: Resource Identification Portal is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: InterMOD is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: Phenoscape Knowledgebase is related to: MONARCH Initiative is related to: Bgee: dataBase for Gene Expression Evolution is related to: NIH Data Sharing Repositories is related to: HomoloGene is related to: Zebrafish International Resource Center is related to: Integrated Manually Extracted Annotation is related to: Zebrafish Genome Project has parent organization: University of Oregon; Oregon; USA is parent organization of: ZFIN Antibody Database is parent organization of: Zebrafish Anatomical Ontology is parent organization of: ZFIN Protocol Wiki is parent organization of: ZFIN Antibody Wiki is organization facet of: Alliance of Genome Resources |
NHGRI P41 HG002659; NHGRI R01 HG004834 |
PMID:23074187 PMID:21036866 PMID:16381936 |
Free, Available for download, Freely available | OMICS_01666, nif-0000-21427, biotools:zfin, r3d100010421, SCR_017504 | http://zfin.org/ZFIN/misc_html/tips.html#newrecord, https://wiki.zfin.org/display/general/ZFIN+Data+Submissions, https://bio.tools/zfin, https://doi.org/10.17616/R3CK5Z | SCR_002560 | Zebrafish Database, The Zebrafish Model Organism Database, Zebra Model Organism Database, ZebraFish Information Network, ZFIN | 2026-08-18 09:40:38 | 978 | ||||
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Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) Resource Report Resource Website 50+ mentions |
Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) (RRID:SCR_003743) | AMP T2D, T2DKP | data or information resource, storage service resource, data repository, disease-related portal, database, topical portal, service resource, portal | Portal and database of DNA sequence, functional and epigenomic information, and clinical data from studies on type 2 diabetes and analytic tools to analyze these data. .Provides data and tools to promote understanding and treatment of type 2 diabetes and its complications. Used for identifying genetic biomarkers correlated to Type 2 diabetes and development of novel drugs for this disease. | type 2 diabetes, diabetes, knowledge, portal, database, repository, type II, diabetic, genetic, data, analysis, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Consortia-pedia is listed by: NIDDK Information Network (dkNET) is related to: Accelerating Medicines Partnership - Alzheimers is related to: Accelerating Medicines Partnership - Alzheimers is related to: Accelerating Medicines Partnership Autoimmune Diseases of Rheumatoid Arthritis and Lupus is related to: Type 1 Diabetes Knowledge Portal is related to: Common Metabolic Diseases Knowledge Portal has parent organization: Foundation for the National Institutes of Health has parent organization: Accelerating Medicines Partnership |
Type 2 diabetes, Diabetes | NIH ; University of Michigan ; Broad Institute ; Fundacion Carlos Slim ; NIDDK |
Free, Freely available | SCR_014533, nlx_157976 | http://www.nih.gov/science/amp/type2diabetes.htm | SCR_003743 | , AMP Diabetes, AMP, T2D, AMP-T2D, Type 2 Diabetes Knowledge Portal, Accelerating Medicines Partnership Type 2 Diabetes, Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal, The AMP-T2D Knowledge Portal, AMP T2D, AMP Type 2 Diabetes | 2026-08-18 09:40:58 | 83 | ||||
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Cancer Imaging Archive (TCIA) Resource Report Resource Website 100+ mentions |
Cancer Imaging Archive (TCIA) (RRID:SCR_008927) | TCIA | data or information resource, image repository, data set, catalog, storage service resource, data repository, database, service resource | Archive of medical images of cancer accessible for public download. All images are stored in DICOM file format and organized as Collections, typically patients related by common disease (e.g. lung cancer), image modality (MRI, CT, etc) or research focus. Neuroimaging data sets include clinical outcomes, pathology, and genomics in addition to DICOM images. Submitting Data Proposals are welcomed. | dicom, imaging, ct, pet, pt, x-ray, mri, magnetic resonance, medical, clinical, research, clinical neuroinformatics, computed tomography, dicom, imaging genomics, magnetic resonance, pet, spect, test data, web service, image collection, image, FASEB list |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing is affiliated with: BraTumIA (Brain Tumor Image Analysis) is related to: NIH Data Sharing Repositories is related to: NCI Imaging Data Commons has parent organization: Frederick National Laboratory for Cancer Research has parent organization: NCI-Frederick |
Cancer | NCI | Restricted | DOI:10.25504/FAIRsharing.jrfd8y, DOI:10.17616/R3NH0V, DOI:10.7937, nlx_151749, r3d100011559 | http://www.nitrc.org/projects/tcia, http://www.cancerimagingarchive.net/, http://www.cancerimagingarchive.net/primary-data/, https://wiki.cancerimagingarchive.net/display/Public/Collections, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/r3NH0V, https://doi.org/10.7937/, https://dx.doi.org/10.7937/, https://fairsharing.org/10.25504/FAIRsharing.jrfd8y, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/R3NH0V | SCR_008927 | TCIA, Cancer Imaging Archive, The Cancer Imaging Archive (TCIA), Cancer Imaging Archive (TCIA), The Cancer Imaging Archive | 2026-08-18 09:42:38 | 415 | ||||
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PDBe - Protein Data Bank in Europe Resource Report Resource Website 50+ mentions |
PDBe - Protein Data Bank in Europe (RRID:SCR_004312) | PDBe | data or information resource, storage service resource, data repository, database, service resource | The European resource for the collection, organization and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - they work to collate, maintain and provide access to the global repository of macromolecular structure data. The main objectives of the work at PDBe are: * to provide an integrated resource of high-quality macromolecular structures and related data and make it available to the biomedical community via intuitive user interfaces. * to maintain in-house expertise in all the major structure-determination techniques (X-ray, NMR and EM) in order to stay abreast of technical and methodological developments in these fields, and to work with the community on issues of mutual interest (such as data representation, harvesting, formats and standards, or validation of structural data). * to provide high-quality deposition and annotation facilities for structural data as one of the wwPDB deposition sites. Several sophisticated tools are also available for the structural analysis of macromolecules. | x-ray, nmr, cryo-em, hybrid method, dna, protein, rna, sugar, ligand, virus, compound, fold, enzyme, 3d spatial image, structure, macromolecule, protein-protein interaction, gold standard, bio.tools |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: DNA DataBank of Japan (DDBJ) is related to: EMDataResource.org is related to: Worldwide Protein Data Bank (wwPDB) is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: DNA DataBank of Japan (DDBJ) is related to: Worldwide Protein Data Bank (wwPDB) is related to: PDBj - Protein Data Bank Japan is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: European Bioinformatics Institute is parent organization of: Electron Microscopy Data Bank at PDBe (MSD-EBI) works with: MOLEonline |
European Molecular Biology Laboratory; Heidelberg; Germany ; Wellcome Trust ; BBSRC ; NIH ; European Union ; MRC ; CCP4 |
PMID:21045060 PMID:21460450 PMID:19858099 |
r3d100012791, biotools:pdbe, nlx_32372 | https://bio.tools/pdbe, https://doi.org/10.17616/R3J226 | SCR_004312 | Protein DataBank Europe, Protein DataBank in Europe, PDBe, Protein Data Bank in Europe, Protein Data Bank Europe, Macromolecular Structure Database | 2026-08-18 09:41:11 | 55 | |||||
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FigShare Resource Report Resource Website 1000+ mentions |
FigShare (RRID:SCR_004328) | figshare | data or information resource, storage service resource, data repository, database, service resource | Repository for all data, figures, theses, publications, posters, presentations, filesets, videos, datasets, negative data in a citable, shareable and discoverable manner with Digital Object Identifiers. Allows to upload any file format to be made visualisable in the browser so that figures, datasets, media, papers, posters, presentations and filesets can be disseminated in a way that the current scholarly publishing model does not allow. Features integration with ORCID, Symplectic Elements, can import items from Github and is a source tracked by Altmetric.com. Figshare gives users unlimited public space and 1GB of private storage space for free. Data are digitally preserved by CLOCKSS. Supported by Digital Science, a division of Macmillan Publishers Limited, as a community-based, open science project that retains its autonomy. | collection, repository, figure, theses, publication, poster, presentation, fileset, dataset, video, negative, data, FASEB list |
is used by: PrePubMed is used by: NIH Heal Project is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: STRENDA is listed by: FORCE11 is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing is related to: ImpactStory is related to: Overleaf is related to: FigsharePlus is related to: NIH Figshare Archive is parent organization of: TRAMS |
Digital Science | Free with charges for advance features, Available for download, Freely available | DOI:10.6084, DOI:10.17616/R3PK5R, r3d100010066, nlx_34569, DOI:10.25504/FAIRsharing.drtwnh | http://www.force11.org/node/4794, https://doi.org/10.17616/R3PK5R, https://doi.org/10.17616/r3HP4V, https://doi.org/10.6084/, https://dx.doi.org/10.6084/, https://fairsharing.org/10.25504/FAIRsharing.drtwnh, https://doi.org/10.17616/R3PK5R | SCR_004328 | Fig share, Figshare | 2026-08-18 09:41:11 | 1467 | |||||
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Nutrition and Obesity Research Centers Resource Report Resource Website 10+ mentions |
Nutrition and Obesity Research Centers (RRID:SCR_004131) | NORC | data or information resource, resource, disease-related portal, topical portal, organization portal, portal | Portal to research centers and core facilities specifically support obesity research and better understand the relationship between health and nutrition. | obesity core facility, obesity portal, obesity research center |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Boston Nutrition and Obesity Research Centers has organization facet: Nutrition and Obesity Research Centers at Harvard has organization facet: Mid-Atlantic Nutrition Obesity Research Center has organization facet: New York Obesity Nutrition Research Center has organization facet: Pennington Biomedical Research Center Nutrition and Obesity Research Center has organization facet: University of Alabama at Birmingham Nutrition and Obesity Research Center has organization facet: University of California San Francisco Nutrition and Obesity Research Center has organization facet: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center has organization facet: University of Michigan Nutrition and Obesity Research Center has organization facet: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center has organization facet: University of Washington Nutrition and Obesity Research Center has organization facet: Washington University St. Louis Nutrition Obesity Research Center |
Obesity, Nutrition-related disease, Eating disorder, Anorexia nervosa, AIDS, Cancer | NIDDK RFA-DK16-006 | Available to the research community | nlx_158684 | SCR_004131 | 2026-08-18 09:41:12 | 46 | ||||||
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NIMH Data Archive Resource Report Resource Website 100+ mentions |
NIMH Data Archive (RRID:SCR_004434) | NDA | data or information resource, storage service resource, data repository, database, service resource | The National Institute of Mental Health Data Archive (NDA) makes available human subjects data collected from hundreds of research projects across many scientific domains. Research data repository for data sharing and collaboration among investigators. Used to accelerate scientific discovery through data sharing across all of mental health and other research communities, data harmonization and reporting of research results. Infrastructure created by National Database for Autism Research (NDAR), Research Domain Criteria Database (RDoCdb), National Database for Clinical Trials related to Mental Illness (NDCT), and NIH Pediatric MRI Repository (PedsMRI). | afni brik, ascii, bshort, bfloat, connectome file format, cifti, clinical neuroinformatics, cor, dicom, imaging genomics, inc, minc2, nifti, os independent, philips par/rec, tex, vrml, phenotype, neuroimaging, genomic, gender, male, female, dti, fmri, mri, spectroscopy, eeg, microarray, snp, cnv, next-generation sequencing, gene regulation, gene expression, genotyping, pedigree, clinical assessment, FASEB list |
uses: HED Tags is used by: National Database for Clinical Trials related to Mental Illness is used by: RDoCdb is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: re3data.org is related to: National Database for Clinical Trials related to Mental Illness is related to: RDoCdb has parent organization: National Institute of Mental Health hosts: GUID Tool |
Autism, Autism spectrum disorder, Asperger Syndrome, Normal control, Sibling control, Parental control, Fragile X syndrome | NIMH ; NINDS ; NIEHS ; NICHD ; Center for Information Technology |
Restricted | nlx_143735, r3d100010717, r3d100012653 | http://www.nitrc.org/projects/ndarportal, https://data-archive.nimh.nih.gov/, https://doi.org/10.17616/R37K63, https://doi.org/10.17616/R3XV5P | http://ndar.nih.gov/ | SCR_004434 | NDAR, National Database for Autism Research, National Institute of Mental Health Data Archive, National Database for Autism Research (NDAR) | 2026-08-18 09:41:17 | 424 | |||
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Database of Genomic Variants Archive (DGVa) Resource Report Resource Website 100+ mentions |
Database of Genomic Variants Archive (DGVa) (RRID:SCR_004896) | DGVa | data or information resource, storage service resource, data repository, database, service resource | Public repository that accepts direct submissions and provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species. Variants are accessioned at the study and sample level, granting stable identifiers that can be used in publications. DGVa data is integrated with other EBI resources, including comprehensive EBI search and Ensembl genome browser. Exchanges data with companion database, dbVar, at National Center for Biotechnology Information.NOTE: since 2019 DGVa doesn't accept submissions. Please send the data for submission to European Variation Archive (EVA). | genome, dna, gene, expression, genetics, mapping, structural, variant, gold standard |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is related to: dbVar is related to: ISCA Consortium is related to: Database of Genomic Variants is related to: Ensembl Variation has parent organization: European Bioinformatics Institute |
PMID:23193291 PMID:24174537 |
Free, Freely available | nlx_86626, r3d100010814 | https://doi.org/10.17616/R3HK7Z | http://www.ebi.ac.uk/dgva/page.php, http://www.ebi.ac.uk/dgva/ | SCR_004896 | , DGVarchive, DGVa, Database of Genomic Variants Archive | 2026-08-18 09:41:26 | 211 | ||||
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dbVar Resource Report Resource Website 100+ mentions |
dbVar (RRID:SCR_003219) | dbVar | data or information resource, storage service resource, data repository, database, service resource | Structural variation database designed to store data on variant DNA > / = 1 bp in size from all organisms. Associations of defined variants with phenotype information is also provided. Users can browse data containing number of variant cells from each study, and filter studies by organism, study type, method and genomic variant. Organisms include human, mouse, cattle and several additional animals. | structure, variation, structural variation, genetics, insertion, deletion, copy number variant, inversion, translocation, genomic imbalance, genotype, gene expression, dna, genomics, phenotype, genetic code |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is related to: Database of Genomic Variants Archive (DGVa) is related to: Database of Genomic Variants has parent organization: NCBI |
PMID:23193291 | Free, Freely available | nlx_157217, r3d100010758 | https://doi.org/10.17616/R3V610 | SCR_003219 | dbVar, Database of Genomic Structural Variation, NCBI dbVar | 2026-08-18 09:40:59 | 198 | |||||
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WormBase Resource Report Resource Website 1000+ mentions |
WormBase (RRID:SCR_003098) | WB, WB REF, WP | data or information resource, storage service resource, data repository, database, service resource | Central data repository for nematode biology including complete genomic sequence, gene predictions and orthology assignments from range of related nematodes.Data concerning genetics, genomics and biology of C. elegans and related nematodes. Derived from initial ACeDB database of C. elegans genetic and sequence information, WormBase includes genomic, anatomical and functional information of C. elegans, other Caenorhabditis species and other nematodes. Maintains public FTP site where researchers can find many commonly requested files and datasets, WormBase software and prepackaged databases. | RIN, Resource Information Network, catalog, database, blast, genomic sequence, gene prediction, orthology assignment, gene function, ortholog, roundworm, geneotype, phenotype, gene mapping, genomics, gene expression, transposon family, c elegans, wormmart, FASEB list, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: AmiGO is related to: GBrowse is related to: Textpresso is related to: Expression Patterns for C. elegans promoter GFP fusions is related to: C. elegans Gene Knockout Consortium is related to: NIH Data Sharing Repositories is related to: UniParc at the EBI is related to: UniParc is related to: Integrated Manually Extracted Annotation is related to: PhenoGO has parent organization: Cold Spring Harbor Laboratory has parent organization: Washington University in St. Louis; Missouri; USA has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: C. elegans Development Vocabulary is parent organization of: C. elegans Gross Anatomy Vocabulary is parent organization of: C. elegans Phenotype Vocabulary is parent organization of: OpenWorm works with: A plasmid Editor is organization facet of: Alliance of Genome Resources |
NHGRI ; NIH Blueprint for Neuroscience Research ; MRC ; BBSRC ; NHGRI U41 HG002223; NIHGRI P41 HG02223 |
PMID:24194605 PMID:19910365 PMID:17991679 PMID:15608221 |
nif-0000-00053, OMICS_01664, r3d100010424 | http://www.wormbase.org/#01-23-6, https://doi.org/10.17616/R3089Z | SCR_003098 | , WB, Worm Base, WB REF, WP | 2026-08-18 09:40:58 | 1911 | |||||
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miRBase Resource Report Resource Website 10000+ mentions |
miRBase (RRID:SCR_003152) | miRBase | data or information resource, storage service resource, data repository, database, service resource, naming service | Central online repository for microRNA nomenclature, sequence data, annotation and target prediction.Collection of published miRNA sequences and annotation. | gene, annotation, hairpin, microrna, nomenclature, rna, sequence, target, transcript, unique name, mirna registry, genetics, bio.tools, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: bio.tools is listed by: Debian has parent organization: University of Manchester; Manchester; United Kingdom |
BBSRC ; Wellcome Trust Sanger Institute |
PMID:24275495 PMID:21037258 PMID:20205188 PMID:17991681 PMID:16957372 PMID:16381832 PMID:14681370 |
Free, Available for download, Freely available | SCR_017497, r3d100010670, nif-0000-03134, biotools:mirbase | http://microrna.sanger.ac.uk/, https://bio.tools/mirbase, https://doi.org/10.17616/R3VG8D | SCR_003152 | microRNA database | 2026-08-18 09:40:48 | 10387 |
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