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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://github.com/cwatson/braingraph/
Software R package for performing graph theory analyses of brain MRI data.
Proper citation: brainGraph (RRID:SCR_017260) Copy
Consortium to bring together clinicians, pathologists, researchers, and biotech innovators to create scalable network of stakeholders interested in helping patients with glomerular kidney disease. Makes collective expertise of its members available for discussion of individual cases, provides infrastructure for biomarker studies, enables genomic research, and facilitates clinical trials.
Proper citation: Glomerular Disease Study & Trial Consortium (RRID:SCR_017264) Copy
https://github.com/drchrisch/SynapseLocator
Software tool that combines steps of image processing, non rigid image registration, and spot localisation. Performs registration of 3D imaging data and localization of spots, active synapses in light microscopy images, in semi automatic mode with graphical user interface.
Proper citation: SynapseLocator (RRID:SCR_017263) Copy
Core provides consultation, training, software and educational tools in bioinformatics and graphics.
Proper citation: Whitehead Institute Bioinformatics and Research Computing Core Facility (RRID:SCR_017150) Copy
https://ous-research.no/bioinformatics/
Core facility provides high throughput sequencing data analysis, metagenomics data analysis, proteomics data analysis, protein structure analysis, functional genomics, programming, scripting, and database or web services.
Proper citation: Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility (RRID:SCR_017152) Copy
Commercial organization located in Warminster, Pennsylvania, USA is manufacturer of specialty equipment, scientific glassware, laboratory and lab safety supplies, and home healthcare products serving pharmaceutical, biotechnology, educational, industrial, OEM, and commercial markets under market leading brand names. Products include pharmaceutical, scientific research, industrial, aeronautic, semiconductor and healthcare. Flagship brands are SP Scientific, SP Scienceware, and SP Ableware.
Proper citation: SP Industries (RRID:SCR_017368) Copy
https://github.com/BDI-pathogens/phyloscanner
Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity.
Proper citation: phyloscanner (RRID:SCR_017400) Copy
Commercial organization located in Abingdon, United Kingdom for high technology products. Manufactures instruments for agriculture, astronomy, automotive, aerospace, bio-imaging, life science, chemical and catalysis, energy generation and storage, forensics, environmental industries, geology, metallurgy, pharmacy, photonics, polymers, quantum technology, data storage, and microelectronics. Products are divided into atom force microscopy, electron microscopy, deposition and etch tools, low temperature systems, optical imaging, nuclear magnetic resonance, MRI and CT servicing, Modular optical spectroscopy, and X-Ray.
Proper citation: Oxford Instruments (RRID:SCR_017366) Copy
https://github.com/raamana/neuropredict
Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers.
Proper citation: neuropredict (RRID:SCR_017405) Copy
https://github.com/SciCrunch/NIF-Ontology/tree/neurons/ttl
An ontology for describing the complex phenotypes of neurons.
Proper citation: Neuron Phenotype Ontology (RRID:SCR_017403) Copy
https://github.com/raamana/graynet
Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications.
Proper citation: graynet (RRID:SCR_017406) Copy
https://www.liebertpub.com/doi/pdf/10.1089/15279160150518540
Software package for statistical analysis by SAS Institute Inc, Cary, NC.
Proper citation: StatView Version 5.0 (RRID:SCR_017411) Copy
Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging.
Proper citation: Mass spectrometry imaging workbench (RRID:SCR_017410) Copy
https://www.avingtrans.plc.uk/
Machine industry company located in Chatteris, Cambridgeshire, United Kingdom and engaged in provision of highly engineered components, systems and services to energy, medical and traffic. Has investment in Energy Divisions, Medical Division, and Aerospace Industries.
Proper citation: Avingtrans PLC (RRID:SCR_017371) Copy
http://www.agilemwt.com/index.htm
Manufacturer, located in Cary, North Carolina, USA, of amplifiers, RF/microwaves, and other electrical components which come in boards, modules, or systems.
Proper citation: Agile Microwave Technology Inc. (RRID:SCR_017373) Copy
https://www.mbfbioscience.com/neuroinfo
Software for automatic identification and delineation of brain regions within experimental mouse brain sections. NeuroInfo registers serial section images of any orientation to Allen Mouse Brain Atlas, corrects for distortion due to histological processing, delineates anatomies in experimental section, and detects and reports on cell number within selected anatomies.
Proper citation: NeuroInfo (RRID:SCR_017346) Copy
https://CRAN.R-project.org/package=ape
Software R package for analysis of phylogenetics and evolution. Environment for modern phylogenetics and evolutionary analyses in R.
Proper citation: ape (RRID:SCR_017343) Copy
https://github.com/zuoxinian/CCS
Software tool for multimodal human brain imaging data analysis. Computational pipeline for discovery science of human brain connectomes at macroscale with multimodal magnetic resonance imaging technologies.
Proper citation: Connectome Computation System (RRID:SCR_017342) Copy
https://horosproject.org/download-horos/
Software tool as open source medical image viewer. Enables to browse and visualize medical imaging libraries.
Proper citation: Horos (RRID:SCR_017340) Copy
Collection of single miRNAs that regulate pathways, gene ontologies and other categories, hence complementing available miRNA target enrichment programs, tailored for miRNA sets. New dictionary on microRNAs and target pathways. Database to augment available target pathway web-servers by providing researches access to information which pathways are regulated by miRNA, which miRNAs target pathway and how specific regulations are.
Proper citation: miRpathDB (RRID:SCR_017356) Copy
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