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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Vall dHebron Institut de Recerca Statistics and Bioinformatics Unit Core Facility Resource Report Resource Website |
Vall dHebron Institut de Recerca Statistics and Bioinformatics Unit Core Facility (RRID:SCR_017175) | UEB | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, software resource, training service resource | Core at Vall dHebron Institut de Recerca, Barcelona, Spain to provide data analysis, softwares and training programs in statistics and bioinformatics for clinical research at VHIR. | bioinformatics, next, generation, sequencing, data, analysis, DNA, RNA, omics, microarray, RTqPCR, metagenomics, methylation | Restricted | SCR_017175 | , Barcelona, Vall dHebron Institut de Recerca, Support Unit in Methodology for Biomedical Research, UEB, Statistics and Bioinformatics Unit, USMIB | 2026-08-21 12:41:06 | 0 | |||||||||
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Duke University Omics Data Analysis Core Facility Resource Report Resource Website |
Duke University Omics Data Analysis Core Facility (RRID:SCR_017174) | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, training service resource | Genomic Analysis and Bioinformatics core for data analysis associated with performing complex and data intensive projects in life science research of Duke University and Duke Medical School. Provides expertise, training, data analysis in next generation sequencing, array and proteomic based technologies. | bioinformatics, data, analysis, training, expertise, next, generation, sequencing, array, proteomic, omics | has parent organization: Duke University; North Carolina; USA | Restricted | SCR_017174 | Analysis Core, Resource, Core Facility, Genomic Analysis and Bioinformatics, Duke University, Omics Data | 2026-08-21 12:41:08 | 0 | |||||||||
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brainGraph Resource Report Resource Website 10+ mentions |
brainGraph (RRID:SCR_017260) | data analysis software, data processing software, software application, software resource | Software R package for performing graph theory analyses of brain MRI data. | graph, theory, analysis, brain, MRI, data |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: CRAN |
Free, Available for download, Freely available | https://www.nitrc.org/projects/braingraph/, https://rdrr.io/cran/brainGraph/, https://www.r-pkg.org/pkg/brainGraph | SCR_017260 | brainGraph - Graph Theory Analysis of Brain MRI Data in R, brainGraph | 2026-08-21 12:41:19 | 16 | ||||||||
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Glomerular Disease Study & Trial Consortium Resource Report Resource Website 1+ mentions |
Glomerular Disease Study & Trial Consortium (RRID:SCR_017264) | GlomCon | consortium, data or information resource, disease-related portal, organization portal, portal, topical portal | Consortium to bring together clinicians, pathologists, researchers, and biotech innovators to create scalable network of stakeholders interested in helping patients with glomerular kidney disease. Makes collective expertise of its members available for discussion of individual cases, provides infrastructure for biomarker studies, enables genomic research, and facilitates clinical trials. | glomerular, kidney, disease, biomarker, genomic, clinical, trial | glomerular kidney disease | Restricted | SCR_017264 | 2026-08-21 12:41:19 | 4 | |||||||||
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SynapseLocator Resource Report Resource Website 1+ mentions |
SynapseLocator (RRID:SCR_017263) | data processing software, image processing software, software application, software resource | Software tool that combines steps of image processing, non rigid image registration, and spot localisation. Performs registration of 3D imaging data and localization of spots, active synapses in light microscopy images, in semi automatic mode with graphical user interface. | image, processing, registration, spot, localisation, 3D, data, active, synapses, microscopy |
is related to: MATLAB is related to: Fiji |
DOI:https://doi.org/10.1101/538041 | Free, Available for download, Freely available | SCR_017263 | 2026-08-21 12:41:10 | 1 | |||||||||
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Whitehead Institute Bioinformatics and Research Computing Core Facility Resource Report Resource Website |
Whitehead Institute Bioinformatics and Research Computing Core Facility (RRID:SCR_017150) | BaRC | access service resource, core facility, data or information resource, service resource | Core provides consultation, training, software and educational tools in bioinformatics and graphics. | bioinformatics, consultation, training, software, graphics | has parent organization: Whitehead Institute; Cambridge; Massachusetts; United States | Restricted | SCR_017150 | Research computing, BaRC, Bioinformatics, Whitehead Institute | 2026-08-21 12:41:17 | 0 | ||||||||
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Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility Resource Report Resource Website |
Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility (RRID:SCR_017152) | BCF | access service resource, analysis service resource, core facility, data analysis service, data or information resource, database, production service resource, service resource | Core facility provides high throughput sequencing data analysis, metagenomics data analysis, proteomics data analysis, protein structure analysis, functional genomics, programming, scripting, and database or web services. | metagenomics, proteomics, protein, structure, functional, genomics, programming, scripting, data | Restricted | SCR_017152 | BCF, Core Facility, University of Oslo, Rikshospitalet-Radiumhospitalet, Bioinformatics | 2026-08-21 12:41:07 | 0 | |||||||||
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SP Industries Resource Report Resource Website |
SP Industries (RRID:SCR_017368) | commercial organization | Commercial organization located in Warminster, Pennsylvania, USA is manufacturer of specialty equipment, scientific glassware, laboratory and lab safety supplies, and home healthcare products serving pharmaceutical, biotechnology, educational, industrial, OEM, and commercial markets under market leading brand names. Products include pharmaceutical, scientific research, industrial, aeronautic, semiconductor and healthcare. Flagship brands are SP Scientific, SP Scienceware, and SP Ableware. | Manufacturer, commercial, organization, component, equipment, laboratory | ISNI: 0000 0004 0566 6119, grid.504161.7 | https://ror.org/00ze9yt51 | SCR_017368 | SP Industries, Inc. | 2026-08-21 12:41:14 | 0 | |||||||||
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phyloscanner Resource Report Resource Website 1+ mentions |
phyloscanner (RRID:SCR_017400) | data analysis software, data processing software, software application, software resource | Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity. | Analysing, pathogen, genetic, diversity, relationship, host, genome | Bill & Melinda Gates Foundation ; ERC Advanced Grant ; Medical Research Council |
PMID:29186559 | Free, Available for download, Freely available | SCR_017400 | 2026-08-21 12:41:15 | 2 | |||||||||
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Oxford Instruments Resource Report Resource Website 10+ mentions |
Oxford Instruments (RRID:SCR_017366) | instrument manufacture, material service resource, production service resource, service resource | Commercial organization located in Abingdon, United Kingdom for high technology products. Manufactures instruments for agriculture, astronomy, automotive, aerospace, bio-imaging, life science, chemical and catalysis, energy generation and storage, forensics, environmental industries, geology, metallurgy, pharmacy, photonics, polymers, quantum technology, data storage, and microelectronics. Products are divided into atom force microscopy, electron microscopy, deposition and etch tools, low temperature systems, optical imaging, nuclear magnetic resonance, MRI and CT servicing, Modular optical spectroscopy, and X-Ray. | Manufacturer, commercial, organization, component, micrsocopy, low, temperature, imaging, nuclear, magnetic, resonance, spectroscop, Xray, insturment | SCR_017366 | 2026-08-21 12:41:11 | 13 | ||||||||||||
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neuropredict Resource Report Resource Website |
neuropredict (RRID:SCR_017405) | data analysis software, data processing software, software application, software resource | Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers. | Predictive, analysis, biomarker, neuroimaging, feature | Free, Available for download, Freely available | https://zenodo.org/record/1058993#.XW7ghShKiM8 | SCR_017405 | 2026-08-21 12:41:13 | 0 | ||||||||||
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Neuron Phenotype Ontology Resource Report Resource Website 1+ mentions |
Neuron Phenotype Ontology (RRID:SCR_017403) | NPO | controlled vocabulary, data or information resource, ontology | An ontology for describing the complex phenotypes of neurons. | Cell, type, phenotype, neuron, ontology |
is used by: BICCN is provided by: NIFSTD |
BRAIN Initiative ; NIMH U24 MH114827 |
Free, Freely available | SCR_017403 | 2026-08-21 12:41:21 | 2 | ||||||||
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graynet Resource Report Resource Website 1+ mentions |
graynet (RRID:SCR_017406) | data analysis software, data processing software, network analysis software, software application, software resource | Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications. | Subject, wise, network, morphometric, feature, structural, MRI, neuroscience, connectivity | DOI:10.21105/joss.00924 | Free, Available for download, Freely available | SCR_017406 | 2026-08-21 12:41:15 | 3 | ||||||||||
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StatView Version 5.0 Resource Report Resource Website 100+ mentions |
StatView Version 5.0 (RRID:SCR_017411) | data analysis software, data processing software, software application, software resource | Software package for statistical analysis by SAS Institute Inc, Cary, NC. | Statistical, analysis, SAS Institute Inc, , | SCR_017411 | 2026-08-21 12:41:21 | 204 | ||||||||||||
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Mass spectrometry imaging workbench Resource Report Resource Website 100+ mentions |
Mass spectrometry imaging workbench (RRID:SCR_017410) | data analysis software, data processing software, software application, software resource | Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging. | Analysis, mass, spectrometry, imaging, data, Galaxy, framework, imzML, file, quality, control, visualization, statistics, docker, container | is related to: University of Freiburg; Baden-Wurttemberg; Germany | DOI:10.1101/628719 | Free, Available for download, Freely available | https://github.com/foellmelanie/docker-galaxy-msi, https://galaxyproject.org/use/msi/ | SCR_017410 | 2026-08-21 12:41:15 | 105 | ||||||||
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Avingtrans PLC Resource Report Resource Website |
Avingtrans PLC (RRID:SCR_017371) | data or information resource, portal, topical portal | Machine industry company located in Chatteris, Cambridgeshire, United Kingdom and engaged in provision of highly engineered components, systems and services to energy, medical and traffic. Has investment in Energy Divisions, Medical Division, and Aerospace Industries. | Investment, manufacturer, aerospace, medical, energy, industry, corporation | SCR_017371 | 2026-08-21 12:41:14 | 0 | ||||||||||||
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Agile Microwave Technology Inc. Resource Report Resource Website |
Agile Microwave Technology Inc. (RRID:SCR_017373) | instrument manufacture, material service resource, production service resource, service resource | Manufacturer, located in Cary, North Carolina, USA, of amplifiers, RF/microwaves, and other electrical components which come in boards, modules, or systems. | Commercial, company, manufacturer, amplifier, microwave, electrical, board, modul, system | SCR_017373 | Agile Mwt | 2026-08-21 12:41:12 | 0 | |||||||||||
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NeuroInfo Resource Report Resource Website 10+ mentions |
NeuroInfo (RRID:SCR_017346) | 3d visualization software, data processing software, data visualization software, image analysis software, image reconstruction software, software application, software resource | Software for automatic identification and delineation of brain regions within experimental mouse brain sections. NeuroInfo registers serial section images of any orientation to Allen Mouse Brain Atlas, corrects for distortion due to histological processing, delineates anatomies in experimental section, and detects and reports on cell number within selected anatomies. | Allen Brain Atlas, Brain, mouse, histology, delineation, mbfbioscience | is related to: Allen Institute for Brain Science | DOI:10.1002/cne.24635 | Restricted | SCR_017346 | 2026-08-21 12:41:11 | 36 | |||||||||
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ape Resource Report Resource Website 50+ mentions |
ape (RRID:SCR_017343) | data analysis software, data processing software, software application, software resource | Software R package for analysis of phylogenetics and evolution. Environment for modern phylogenetics and evolutionary analyses in R. | analysis, phylogenetics, evolution, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: CRAN |
PMID:30016406 PMID:14734327 PMID:22495750 |
Free, Available for download, Freely available | biotools:ape | https://cran.r-project.org/web/packages/ape/ape.pdf, http://ape-package.ird.fr/, https://bio.tools/ape | SCR_017343 | ape 3.0, ape 5.0, Analysis of Phylogenetics and Evolution | 2026-08-21 12:41:13 | 52 | ||||||
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Connectome Computation System Resource Report Resource Website 10+ mentions |
Connectome Computation System (RRID:SCR_017342) | CCS | data analysis software, data processing software, software application, software resource | Software tool for multimodal human brain imaging data analysis. Computational pipeline for discovery science of human brain connectomes at macroscale with multimodal magnetic resonance imaging technologies. | Multimodal, human, brain, imaging, data, analysis, connectome, magnetic, resonance | DOI:10.1007/s11434-014-0698-3 | Free, Available for download, Freely available | SCR_017342 | 2026-08-21 12:41:10 | 16 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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