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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PEDJAVA Resource Report Resource Website |
PEDJAVA (RRID:SCR_008429) | PEDJAVA | software application, software resource | Software application that allows pedigree entry and retrieval from an internet browser into a distant MS ACCESS database. Includes IP access restriction, automatic numbering of families and individuals and database consistency checks. (entry from Genetic Analysis Software) | gene, genetic, genomic, jdk, no restriction for client, server win 95/nt | is listed by: Genetic Analysis Software | nlx_154522 | SCR_008429 | SciCrunch Registry | PedJava | 2026-09-26 02:19:11 | 0 | ||||||||
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Hays Resource Report Resource Website 50+ mentions |
Hays (RRID:SCR_008781) | Hays | commercial organization, job resource | UK and Australia scientific job board. | recruit, candidate, employment, career, united kingdom, australia, worldwide, job seeker, employer |
is used by: NIF Data Federation is related to: Integrated Jobs |
nlx_144166 | SCR_008781 | SciCrunch Registry | Hays: Recruiting experts worldwide | 2026-09-26 02:19:12 | 73 | ||||||||
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SIMULAPLOT Resource Report Resource Website |
SIMULAPLOT (RRID:SCR_009079) | SIMULAPLOT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A tool designed to help visualize the joint effect of genes and continuous environmental covariates on complex human disease simulation models. | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154089 | http://www.chg.duke.edu/research/simlaplot.html | SCR_009079 | SciCrunch Registry | 2026-09-26 02:19:13 | 0 | |||||||
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CASPAR Resource Report Resource Website 50+ mentions |
CASPAR (RRID:SCR_009074) | CASPAR | software application, software resource | Software application who''s main novel feature is conditional linkage analyses, in which the population can be subdivided according to criteria at some loci and analyzed for linkage at other loci. CASPAR uses simulation to overcome the problems inherent in such multiple testing. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:caspar, nlx_154071 | https://bio.tools/caspar | SCR_009074 | SciCrunch Registry | Computerized Affected Sibling Pair Analyzer and Reporter | 2026-09-26 02:19:13 | 54 | |||||||
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WEBQTL Resource Report Resource Website 10+ mentions |
WEBQTL (RRID:SCR_009072) | WEBQTL | software application, software resource | An interactive web site useful for exploring the genetic modulation of thousands of phenotypes gathered over a 30-year period by hundreds of investigators using reference panels of recombinant inbred strains of mice. WebQTL includes dense error-checked genetic maps, as well as extensive gene expression data sets (Affymetrix) acquired across more than 35 strains of mice. WebQTL accepts user-entered traits for BXD, AXB/BXA, CXB, BXH, AKXD recombinant inbred strains. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, and, python, all via internet | is listed by: Genetic Analysis Software | nlx_154066 | http://www.webqtl.org/search.html | SCR_009072 | SciCrunch Registry | 2026-09-26 02:19:13 | 46 | ||||||||
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ASPEX Resource Report Resource Website 1+ mentions |
ASPEX (RRID:SCR_008414) | ASPEX | software application, software resource | A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl, perl, (the graphic script requires xmgr, available from ftp://ftp.teleport.com/pub/users/pturner/acegr), unix, (solaris/sunos/irix/osf-1), linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154234, biotools:aspex | https://bio.tools/aspex | SCR_008414 | SciCrunch Registry | Affected Sib Pairs EXclusion map | 2026-09-26 02:19:11 | 9 | |||||||
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GENEHUNTER++SAD Resource Report Resource Website |
GENEHUNTER++SAD (RRID:SCR_008777) | GENEHUNTER++SAD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application with implementation of the Sad statistic, more robust to transmission ratio distortion in the context of allele sharing (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154335 | SCR_008777 | SciCrunch Registry | 2026-09-26 02:19:12 | 0 | ||||||||
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Twin Study of Child and Adolescent Development - TCHAD Resource Report Resource Website |
Twin Study of Child and Adolescent Development - TCHAD (RRID:SCR_008897) | TCHAD | biomaterial supply resource, material resource | Data and biomaterial from a longitudinal study of 1,500 Swedish twin pairs from age 8 to age 20. Twins, parents, and teachers responded to 4 waves of questionnaires (1994, 1999, 2002, 2006) and a clinical interview. In the last follow up (2006) 1325 biological samples for DNA-extraction were collected. A paper that describes the study was published (Lichtenstein, Tuvblad, Larsson, Carlstrom, 2007, Twin Research and Human Genetics). Twins were followed prospectively from childhood to emerging adulthood. The data include a broad spectrum of measures of environments as well as internalizing and externalizing problems behaviors from different informants (twins, parents, teachers, clinical assessments). | child, adolescent, longitudinal, questionnaire, clinical interview, behavior, adhd, antisocial behavior, environment, informant, gene, comorbidity, psychopathology, eating disorder, phobia, relationship, dental status, fatty acid |
is listed by: One Mind Biospecimen Bank Listing is related to: Swedish Twin Registry has parent organization: Karolisnka Biobank |
Twin, Aging | Vetenskapsradet ; FAS |
nlx_151385 | http://ki.se/en/meb/twin-study-of-child-and-adolescent-development-tchad | SCR_008897 | SciCrunch Registry | KI Biobank - TCHAD, Twin Study of Child Adolescent Development - TCHAD, Twin Study of Child and Adolescent Development | 2026-09-26 02:19:12 | 0 | |||||
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GENEHUNTER-MODSCORE Resource Report Resource Website 1+ mentions |
GENEHUNTER-MODSCORE (RRID:SCR_009069) | GENEHUNTER-MODSCORE | software application, software resource | Software application that is an extension of GENEHUNTER-IMPRINTING, based on the original GENEHUNTER version 2.1 release 6, that allows for a MOD-score analysis, in which parametric LOD scores are maximized over the parameters of the trait model, i.e., the penetrances and disease allele frequency. As of version 2.0, it is possible to use sex-specific recombination frequencies. The genetic positions of markers can be automatically read from a publicly available genetic map. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, sunos, solaris, osf, hpux, aix, ultrix, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154061 | http://www.staff.uni-marburg.de/~strauchk/software.html | SCR_009069 | SciCrunch Registry | 2026-09-26 02:19:13 | 1 | ||||||||
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GERON Resource Report Resource Website 1+ mentions |
GERON (RRID:SCR_008531) | GERON | software resource, software toolkit | A suite of web-based open source software programs for clinical and genetic study. The aims of this software development in the Laboratory of Neurogenetics, NIA, NIH are * Build retrievable clinical data repository * Set up genetic data bank * Eliminate redundant data entries * Alleviate experimental error due to sample mix-up and genotyping error. * Facilitate clinical and genetic data integration. * Automate data analysis pipelines * Facilitate data mining for genetic as well as environmental factors associated with a disease * Provide an uniformed data acquisition framework, regardless the type of a given disease * Accommodate the heterogeneity of different studies * Manage data flow, storage and access * Ensure patient privacy and data confidentiality/security. The GERON suite consists of several self contained and yet extensible modules. Currently implemented modules are GERON Clinical, Genotyping, and Tracking. More modules are planned to be added into the suite, in order to keep up with the dynamics of the research field. Each module can be used separately or together with others into a seamless pipeline. With each module special attention has been given in order to remain free and open to the academic/government user., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | clinical, genotyping, tracking, genetic, module, pipeline | has parent organization: Intramural Research Program | Aging | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30610 | SCR_008531 | SciCrunch Registry | 2026-09-26 02:19:12 | 5 | ||||||
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GEMS Resource Report Resource Website 100+ mentions |
GEMS (RRID:SCR_009188) | GEMS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for fitting Genetic Epidemiology Models by running stochastic simulation in relation to disease dynamics. | gene, genetic, genomic, unix, (dec-alpha), linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154327 | http://statgen.genomecenter.howard.edu/gems.htm | SCR_009188 | SciCrunch Registry | Genetic Epidemiology ModelS | 2026-09-26 02:19:15 | 463 | ||||||
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GCHAP Resource Report Resource Website 1+ mentions |
GCHAP (RRID:SCR_009186) | GCHAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that finds maximum likelihood estimates of haplotype frequencies from a sample of genotyped individuals. By excluding haplotypes with zero MLE at an early stage, this implementation uses many orders of magnitude less space and time than naive implementations. A second program, ApproxGCHap, is provided to give alternate estimates for data sets with large numbers of loci or large amounts of missing genotypes. | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | PMID:14555636 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154325 | SCR_009186 | SciCrunch Registry | Gene Counting method for HAPlotype analysis. GENEPI.JAR | 2026-09-26 02:19:15 | 7 | ||||||
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MAREYMAP Resource Report Resource Website 10+ mentions |
MAREYMAP (RRID:SCR_009066) | MAREYMAP | software application, software resource | Software application that is a meiotic recombination rate estimation program. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, r, tcl/tk | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154056 | SCR_009066 | SciCrunch Registry | 2026-09-26 02:19:13 | 41 | ||||||||
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ASSOCIATIONVIEWER Resource Report Resource Website |
ASSOCIATIONVIEWER (RRID:SCR_009063) | ASSOCIATIONVIEWER | software application, software resource | A Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154050, biotools:association_viewer | https://bio.tools/association_viewer | SCR_009063 | SciCrunch Registry | 2026-09-26 02:19:13 | 0 | ||||||||
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WHICHRUN Resource Report Resource Website |
WHICHRUN (RRID:SCR_009064) | WHICHRUN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that uses multilocus genotypic data to allocate individuals to their most likely source population. | gene, genetic, genomic, c++, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154051 | http://www.bml.ucdavis.edu/whichrun.htm | SCR_009064 | SciCrunch Registry | 2026-09-26 02:19:13 | 0 | |||||||
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MAP MANAGER QTX Resource Report Resource Website 1+ mentions |
MAP MANAGER QTX (RRID:SCR_009061) | MAP MANAGER QTX | software application, software resource | A graphic, interactive program to map quantitative trait loci using intercrosses, backcrosses or recombinant inbred strains in experimental plants or animals. A completely rewritten cross-platform version of Map Manager QT with enhanced analysis functions. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, and cross-platform code from xvt, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154046 | SCR_009061 | SciCrunch Registry | 2026-09-26 02:19:13 | 4 | |||||||||
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G-MENDEL Resource Report Resource Website |
G-MENDEL (RRID:SCR_009062) | G-MENDEL | software application, software resource | Software tool for construction of genetic linkage maps and analyzing Mendelian phenotypes. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154049 | http://cropandsoil.oregonstate.edu/G-mendel | SCR_009062 | SciCrunch Registry | 2026-09-26 02:19:13 | 0 | ||||||||
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GAP Resource Report Resource Website |
GAP (RRID:SCR_009183) | GAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 21, 2016. Software package for the management and analysis of pedigree data. it offers: 1. Powerful database management tools, specifically designed for family data; 2. Automatic pedigree drawing; 3. Segregation and linkage analysis, based on traditional maximum likelihood methods and newer, more powerful, Monte Carlo methods that can model both genetic and environmental factors. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, (3.1/95/nt), unix, solaris | is listed by: Genetic Analysis Software | nlx_154321 | SCR_009183 | SciCrunch Registry | genetic analysis package | 2026-09-26 02:19:15 | 0 | ||||||||
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Finite Element Toolkit Resource Report Resource Website 1+ mentions |
Finite Element Toolkit (RRID:SCR_008682) | software resource, software toolkit | The Finite Element ToolKit (FETK) is a collaboratively developed, evolving collection of adaptive finite element method (AFEM) software libraries and tools for solving coupled systems of nonlinear geometric partial differential equations (PDE). The FETK libraries and tools are written in an object-oriented form of ANSI-C and in C , and include a common portability layer (MALOC) for all of FETK, a collection of standard numerical libraries (PUNC), a stand-alone high-quality surface and volume simplex mesh generator (GAMer), a stand-alone networked polygon display tool (SG), a general nonlinear finite element modeling kernel (MC), and a MATLAB toolkit (MCLite) for protyping finite element methods and examining simplex meshes using MATLAB. The entire FETK Suite of tools is highly portable (from iPhone to Blue Gene/L), thanks to use of a small abstraction layer (MALOC) and heavy use of the GNU Autoconf infrastructure. The primary FETK ANSI-C software libraries are: :- MALOC is a Minimal Abstraction Layer for Object-oriented C/C programs. :- PUNC is Portable Understructure for Numerical Computing (requires MALOC). :- GAMer is a Geometry-preserving Adaptive MeshER (requires MALOC). :- SG is a Socket Graphics tool for displaying polygons (requires MALOC). :- MC is a 2D/3D AFEM code for nonlinear geometric PDE (requires MALOC; optionally uses PUNC GAMER SG). Application-specific software designed for use with the FETK software libraries is: :- GPDE is a Geometric Partial Differential Equation solver (requires MALOC PUNC MC; optionally uses GAMER SG). :- APBS is an Adaptive Poisson-Boltzmann Equation Solver (requires MALOC PUNC MC; optionally uses GAMER SG). :- SMOL is a Smoluchowki Equation Solver solver (requires MALOC PUNC MC; optionally uses GAMER SG). MATLAB toolkits designed for use with MC and SG or as standalone packages: :- MCLite is a simple 2D MATLAB version of MC designed for teaching. :- FEtkLAB is a sophisticated 2D MATLAB adaptive PDE solver built on top of MCLite. Related packages developed and maintained by FETK developers (included in PUNC above): :- PMG is a Parallel Algebraic MultiGrid code for general semilinear elliptic equatons. :- CgCode is a package of Conjugate gradient Codes for large sparse linear systems. Sponsors: This resource is developed and supported by the MCP Research Group at the UCSD Center for Computational Mathematics. | element, differential equation, geometric, library, modeling, nonlinear, software, tool, toolkit, volume |
is related to: Adaptive Poisson-Boltzmann Solver has parent organization: University of California at San Diego; California; USA |
nif-0000-33758 | SCR_008682 | SciCrunch Registry | FETK | 2026-09-26 02:19:12 | 5 | |||||||||
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QUTIE Resource Report Resource Website 1+ mentions |
QUTIE (RRID:SCR_009098) | QUTIE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application for enabling the analysis of rare variants in large-scale case control and quantitative trait association studies. CCRaVAT (Case-Control Rare Variant Analysis Tool) and QuTie (Quantitative Trait) are software packages that enable efficient large-scale analysis of rare variants across specific regions or genome-wide. These programs implement a rare variant super-locus or collapsing method that investigates the accumulation of rare variant alleles in either a case-control or quantitative trait study design. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154191 | SCR_009098 | SciCrunch Registry | Case-Control RAre Variant Analysis Tool CCRAVAT | 2026-09-26 02:19:14 | 1 |
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