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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
JAX Mice: Neural Tube Defects
 
Resource Report
Resource Website
JAX Mice: Neural Tube Defects (RRID:SCR_007333) JAX Neural Tube Defects biomaterial supply resource, material resource, organism supplier This Resource maintains and distributes mouse models for neural tube defects. Current Neural Tube Defect stains include: * Repository- Live: 129(Cg)-Foxg1/J, B6.129P2(Cg)-Foxg1/J, B6.129P2-Apob/J, B6.129S7-Twist1/J, B6.129X1(Cg)-Shh/J, B6.Cg-Lootl/GrsrJ, B6.D2-Kitl/J, B6;129-Pax3/J, B6;129-Shh/J, B6;SJL-Tg(Sox10-cre)507Mcln/J, C57BL/6J-Pax3/J, STOCK Ptch1/J, STOCK Sec24b/J, STOCK Smo/J, STOCK Tgfb3/J, WCB6F1/J-Kitl/Kitl, * Cryopreserved - Ready for recovery: 129-Ski/J, 129-Tulp3/Pjn, 129/Sv-Csk/J, 129P4.Cg-Axin1/J, 129S-Dvl2/J, 129S-Dvl3/J, 129S-Nog/J, 129S1/Sv-Sufu/J, 129X1-Smo/J, A.129P-Ski/J, A/WySnJ-ctl/GrsrJ, B6-Pax3.Cg-N/J, B6.129-Dll1/J, B6.129-Kif3a/J, B6.129-Ski/J, B6.129-Tulp3/Pjn, B6.129S1-Twist1/J, B6.129S2-Mgat1/J, B6.129S4-Shroom3/J, B6.129S4-Strap/J, B6.129S6-Crebbp/Jm, B6.129S6-Dnmt3l/J, B6.C3 Pde6bHps4/+ +-Lmx1a/J, B6.C3-Gli3/J, B6;129-Apob Apoe/J, B6;129S-Ldlr Apob/J, B6;129S-Twist1/J, B6;129S6-Apaf1/J, B6;129S7-Apob/J, B6C3Fe a/a-Lmx1a/J, B6C3Fe a/a-Wnt1/J, B6CBACa A/A-we a Mafb/J, B6EiC3Sn a/A-Egfr Wnt3a/J, BNT/LeJ, C3H/HeSn-Gpr161/J, C3HeB/FeJ x STX/Le-Mc1r Gli3 Tw/J, C57BL/6J-Pax3/J, FL/1Re-Kit/J, FL/1ReJ, JE/LeJ, LPT/LeJ, STOCK Apaf1/J, STOCK Grhl3/J, STOCK Mttp Ldlr Apob Tg(Mx1-cre)1Cgn/J, STOCK Pax3 Mlph/J, STOCK Shh/J, STOCK T/J, STOCK a/a Egfr/J, STOCK t tf/J, WB.Cg-f/J, WB.D2-Kitl/J, 129S1.B6-Shroom3/J * Under Development - Now Accepting Orders: 129S1.B6-Shroom3/J, 129S1.B6-Zic2/J, STOCK Nog/J, STOCK Tg(TCF/Lef1-cre/ERT2)1Dje/J First time users are required to fill out a request form for mice. Information on individual strains is also available through links on the Web site. mice, model, neural tube defect, cryopreserved, live is listed by: One Mind Biospecimen Bank Listing
has parent organization: Jackson Laboratory
Neural tube defect NICHD contract N01-HD-53230 Public nif-0000-00218 http://neuraltube.jax.org/index.html SCR_007333 JAX Developmental Biology Research: Neural Tube Defects 2026-08-21 12:38:21 0
Aged Rodent Tissue Arrays
 
Resource Report
Resource Website
Aged Rodent Tissue Arrays (RRID:SCR_007332) NIA Tissue Arrays, analysis service resource, biomaterial analysis service, material analysis service, production service resource, service resource Offer high-throughput analysis of tissue histology and protein expression for the biogerontology research community. Each array is a 4 micron section that includes tissue cores from multiple tissues at multiple ages on one slide. The arrays are made from ethanol-fixed tissue and can be used for all techniques for which conventional tissue sections can be used. Ages are chosen to span the life from young adult to very old age. (available ages: 4, 12, 18, 24 and 28 months of age) Images of H&E stained punches are available for Liver, Cardiac Muscle, and Brain. The NIA aged rodent tissue arrays were developed with assistance from the National Cancer Institute (NCI) Tissue Array Research Program (TARP), led by Dr. Stephen Hewitt, Director. NCI TARP contains more information on tissue array construction, protocols for using arrays, and references. Preparation and Product Description Tissue arrays are prepared in parallel from different sets of animals so that experiments can be conducted in duplicate, with each array using unique animals with a unique product number. The product descriptions page describes each array, including: * Strain * Gender * Ages * Tissues * Animal Identification Numbers aged, biogerontology, caloric restricted, rodent, protein expression, tissue array, tissue core, histology, adult, old, old rodent, c57bl/6, male, female, liver, cardiac muscle, brain, tissue, kidney, skin, frontal cortex, muscle, thigh, white adipose tissue, pancreas, testes, prostate, spleen, lung, heart, dwarf, wild type, early adult, middle adult, late adult, microarray, image Aged, Old, Control, Aging NIA ;
NCI ;
NIH Blueprint for Neuroscience Research
Public: NIA aged rodent tissue arrays are available to investigators at academic and nonprofit research institutions that are engaged in projects directly related to aging and age-related disorders. nif-0000-00216 http://www.nia.nih.gov/ResearchInformation/ScientificResources/AgedRodentTissueBankHandbook/TissueArrays/ SCR_007332 Aged Rodent Tissue Bank Handbook - Tissue Arrays, NIH Aged Rodent Tissue Bank Handbook Tissue Arrays 2026-08-21 12:38:07 0
Atlases of the Brain
 
Resource Report
Resource Website
Atlases of the Brain (RRID:SCR_007293) atlas, data or information resource, training resource Brain atlas in sagittal, coronal, and axial planes some from myelin stained sections, others from MRI. The structures are outlined and labeled on the zoomable images in the coronal series. The labels can also be used in quiz mode. Designed as part of of program for second year medical students studying neuroanatomy. neuroanatomy has parent organization: University of Utah; Utah; USA nif-0000-00092 SCR_007293 Atlases of the Brain 2026-08-21 12:38:13 0
BIRNLex
 
Resource Report
Resource Website
BIRNLex (RRID:SCR_007326) controlled vocabulary, data or information resource, ontology THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 26, 2011. Lexicon that provides entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. These sources may include complex image databases, such as data from structural and functional magnetic resonance imaging (MRI) on human subjects involved in studies on Alzheimer''s disease or schizophrenia. The BIRNLex is a specialized vocabulary utilized by BIRN scientists in the context of their research, including common terms for neuroanatomy, molecular species, subject information, behavioral and cognitive processes, experimental practice and design, and the associated elements of primary data provenance required for large-scale data integration across disparate experimental studies.The BIRNLex offers well defined terms from several domains of importance to neuroimaging across scales. controlled vocabulary, owl is listed by: BioPortal
has parent organization: Drexel University College of Medicine; Pennsylvania; USA
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00199 http://xwiki.nbirn.net:8080/xwiki/bin/view/%20BIRN-OTF-Public/ SCR_007326 BIRNLex 2026-08-21 12:38:07 0
Computational Neuroscience Ontology
 
Resource Report
Resource Website
Computational Neuroscience Ontology (RRID:SCR_007289) CNO controlled vocabulary, data or information resource, ontology A controlled vocabulary of terms used in Computational Neurosciences to describe models of the nervous system. This first release of CNO is an alpha version and should be further aligned with other ontologies accessible on Bioportal and should be made compliant with the OBO foundry recommendations. owl is listed by: BioPortal Creative Commons Attribution License, v3 Unported nlx_157372 SCR_007289 2026-08-21 12:38:20 0
LONI Image and Data Archive
 
Resource Report
Resource Website
100+ mentions
LONI Image and Data Archive (RRID:SCR_007283) IDA, LONI IDA, data or information resource, database, image collection Archive used for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. IDA is utilized for dozens of neuroimaging research projects across North America and Europe and accommodates MRI, PET, MRA, DTI and other imaging modalities. data storage, mri, pet, mra, dti, neuroimaging, image storage, histology, fmri, spect, normal, control, alzheimer's disease, mild cognitive impairment, data sharing, clinical, protection, brain, cryosection, FASEB list is recommended by: National Library of Medicine
is listed by: NIH Data Sharing Repositories
Control, Autism, Parkinson's disease, Alzheimer's disease, Mild Cognitive Impairment, Normal control, Aging NIBIB Restricted nif-0000-00040, r3d100012840 https://ida.loni.usc.edu/login.jsp?search=true, https://doi.org/10.17616/R39N6D https://ida.loni.ucla.edu/login.jsp SCR_007283 , IDA, LONI Database, LONI, Image Data Archive 2026-08-21 12:38:20 113
NINDS/UCLA Repository for Parkinson's Disease Mouse Models
 
Resource Report
Resource Website
NINDS/UCLA Repository for Parkinson's Disease Mouse Models (RRID:SCR_007319) PDmice biomaterial supply resource, material resource, organism supplier THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 26, 2011. Information for depositors Investigators who are willing to share mice with the PD research community through this resource should send an email to PDMice_at_ninds.nih.gov describing the mouse. The submission will be reviewed by the PD Models Repository Oversight Committee and, if accepted, a copy of the MTA will be sent by return email. NINDS is most interested in distributing mice that have been characterized in a peer-reviewed publication, but other models will certainly be considered. The email should describe the following: The protocol for identification from tail DNA. The health report of the mice to be shipped (the report has to be less than 2 months old). Information about the strain and any special needs for care and breeding. Information about any publications involving the mice Certification that mice are not encumbered by continuing intellectual property or other rights to any research, data or discovery utilizing the animals. Information for consumers Investigators desiring to study the mice available through the repository should send a request via email to PDMice_at_ninds.nih.gov. Requests will be reviewed by the PD Models Repository Oversight Committee and priority will be determined on a first come, first served basis; two breeding pairs will typically be shipped to any single requester. As detailed in the MTA, mice are not available for commercial research, including but not limited to drug screening. Neither the creator nor UCLA have a role in the governance of the Repository, and specifically, cannot impose conditions upon availability or distribution. It is anticipated that until the Repository is in a mode of steady state production, requests will be collected and mice distributed as supply allows. The email requesting mice should include: A brief description of the protocol Either a copy of the IACUC approval letter or numberNINDS/UCLA Repository for Parkinson's Disease Mouse Models: One of the most immediate and important benefits of discoveries regarding the genetic or environmental causes of Parkinson's disease (PD) is the subsequent development of animal models wherein therapeutic and/or preventative interventions may be studied. The widespread availability of such models is critically important to making progress against a disorder that affects more than 500,000 Americans at any given time. The National Institute of Neurological Disorders and Stroke (NINDS) fully recognizes the burden placed on investigators by the financial and logistical realities of distributing high demand research resources. Some investigators have deposited their mice with national distribution facilities but many mouse models are not available through such resources. Developing means to facilitate greater sharing of mouse models of PD is one of the goals developed by the PD research community at the July 2002 summit meeting convened by the NIH Director. Accordingly, as part of the effort to accelerate PD research, NINDS and the University of California at Los Angeles (UCLA) created a resource that will distribute transgenic mouse models of human PD that are not yet available through national commercial resources. Investigators who are willing to share mice with the PD research community can simply arrange with NINDS to have the mice deposited at UCLA and investigators desiring to study the mice may arrange with NINDS to obtain two breeding pairs. The process will use Material Transfer Agreements created specifically for this arrangement. fbv x 129/sv, fvb/n, 129s4 mix, 129s6/svev, -/-a53t/pac tg alpha, alpha synuclein knockout, bl6, dj-1 knockout, mt human alpha synuclein (a53t), parkin 129s4, synuclein, mouse model is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of California at Los Angeles; California; USA
Parkinson's disease NINDS THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00187 SCR_007319 2026-08-21 12:38:06 0
Clinical Randomisation of an Antifibrinolytic in Significant Haemorrhage
 
Resource Report
Resource Website
1+ mentions
Clinical Randomisation of an Antifibrinolytic in Significant Haemorrhage (RRID:SCR_007235) data or information resource, experimental protocol, narrative resource, portal, topical portal This is a trial for a large randomised placebo controlled trial among trauma patients with, or at risk of, significant haemorrhage, of the effects of antifibrinolytic treatment on death and transfusion requirement. Sponsors: This resource is supported by UK NIHR Health Technology Assessment programme, Pfizer, BUPA Foundation, and J P Moulton Charitable Foundation. Keyowrds: Trial, Placebo, Drug, Trauma, Haemorrhage, Antifibrinolytic, Treatment, Death, Transfusion, nif-0000-30275 SCR_007235 Crash-2 2026-08-21 12:38:12 7
Autoaligner
 
Resource Report
Resource Website
10+ mentions
Autoaligner (RRID:SCR_007355) data analysis software, data processing software, software application, software resource Microtomy is a standard technique used for 2D microscopy, but it can also provide the foundation for 3D analysis using AutoAligner. AutoAligner reads a stack of serial sections and automatically aligns the single images, building up a 3D space that can be explored using Imaris. Each image is aligned in translation and rotation relative to its precursor image in the sequence. In addition to a fully automated mode, AutoAligner also provides manual control for neighboring images that are too different from each other for automatic alignment. The visual alignment tool uses fast display techniques for aligning images in real time. nif-0000-00266 SCR_007355 2026-08-21 12:38:15 25
Activ 2000
 
Resource Report
Resource Website
1+ mentions
Activ 2000 (RRID:SCR_007352) data analysis software, data processing software, software application, software resource Data analysis software with the following main features: fMRI spatial and temporal pre-processing (gaussian filtering) with motion correction, time slicing and template co-registration ; fMRI multithreaded bloc processing with one or more conditions (up to 999), lateralization index, paradigm design (box-car style with HRF convolution), anatomic coregistration, multiplanar reconstructions, opengl 3D surfacic rendering. DPTools and Activ 2000 are now one single software: DPTools v 3.0 and above. All the features already included in DPTools are available for the fMRI processings (statistics, motion correction, time slicing, aso). DPTools 3.0 can read Siemens Mosaic and Philips REC/PAR files for diffusion / dynamic series, and can export files to SPM99 format. Features: * Images Conversion * Paradigm Creation * Images Pre-Processing * Images Processing * Statistics * Co-registration * 3D * Filming * Loading / Saving * Batch Script * PACS Integration * and more... Activ 2000 is freely downloadable (46 MB) nif-0000-00258 SCR_007352 DPTools 2026-08-21 12:38:15 3
3DViewnix
 
Resource Report
Resource Website
1+ mentions
3DViewnix (RRID:SCR_007351) 3DViewnix d visualization software, data processing software, software application, software resource Data-, machine-, and application- independent software system for the visualization and analysis of multidimensional images. This transportable, very inexpensive software system, has capabilities for visualizing, manipulating, and analyzing multidimensional, multimodality image information. It is designed to run on Unix machines under X-windows. It uses a data protocol that is a multidimensional generalization of the ACR-NEMA standards. We have tested it extensively on SGI and Sun workstations and PCs. Other recipients of 3DVIEWNIX have installed it on a variety of platforms including IBM RS6000s, HP700s, and Stardent, all from a single source code version. UNIQUE FEATURES OF 3DVIEWNIX * Transportable - based on UNIX, X-window, and C * Based on multidimensional generalization of ACR-NEMA standards of data representation * Application-independent * Image dimensionality independent * Can handle rigid, non-rigid, static, and dynamic objects and object assemblies * Can handle object information from multiple modalities and longitudinal acquisitions * Multitudes of visualization, manipulation, and analysis methods incorporated * Open software system distributed with source code 3d imaging, registration, segmentation, visualization, volume, multi-modal, image is listed by: 3DVC
is listed by: Biositemaps
has parent organization: University of Pennsylvania; Philadelphia; USA
PMID:12821028 Open software system distributed with source code nif-0000-00257 SCR_007351 2026-08-21 12:38:21 1
Vision Public Information Network
 
Resource Report
Resource Website
Vision Public Information Network (RRID:SCR_007340) data or information resource, portal, topical portal The National Eye Institute (NEI) created the VISION Public Information Network for the purpose of communicating with public information officers at NEI grantee institutions. The Network''s primary mission is to work with the NEI in disseminating research results to the national and local media. The Network also works to inform the public of the mission of the National Institutes of Health (NIH) to improve the health of America through medical research. The NEI is part of the NIH, U.S. Department of Health and Human Services (DHHS). General information portal for eye and vision related resources for the public. Sponsors: This resource is supported by the National Eye Institute. eye, grant, health, human, information, media, medical, network, research, vision has parent organization: National Eye Institute (NEI) Commons nif-0000-00236 SCR_007340 Vision Network 2026-08-21 12:38:21 0
Xvoxtrace
 
Resource Report
Resource Website
Xvoxtrace (RRID:SCR_007377) data processing software, image processing software, software application, software resource Xvoxtrace enables volume segmentation of tomographic data using manual tracing. This program allows the researcher to outline features on individual planes of the volume while being guided by simultaneous views of the tracing displayed on a volume rendering or tilt-series. Traced contours can be viewed using XDend or used to generate surfaces for viewing in Synu. Basic Requirements:OpenGL, X windows, and Linux platforms : : has parent organization: National Center for Microscopy and Imaging Research nif-0000-00354 SCR_007377 Xvoxtrace 2026-08-21 12:38:15 0
NSR Physiome Project
 
Resource Report
Resource Website
1+ mentions
NSR Physiome Project (RRID:SCR_007379) NSR Physiome Project data or information resource, portal, professional program, simulation software, software application, software resource, topical portal, training resource Database of physiological, pharmacological, and pathological information on humans and other organisms and integration through computational modeling. Models include everything from diagrammatic schema, suggesting relationships among elements composing a system, to fully quantitative, computational models describing the behavior of physiological systems and an organism''s response to environmental change. Each mathematical model is an internally self-consistent summary of available information, and thereby defines a working hypothesis about how a system operates. Predictions from such models are subject to test, with new results leading to new models.BR /> A Tool developed for the NSR Physiome project is JSim, an open source, free software. JSim is a Java-based simulation system for building quantitative numeric models and analyzing them with respect to experimental reference data. JSim''s primary focus is in physiology and biomedicine, however its computational engine is quite general and applicable to a wide range of scientific domains. JSim models may intermix ODEs, PDEs, implicit equations, integrals, summations, discrete events and procedural code as appropriate. JSim''s model compiler can automatically insert conversion factors for compatible physical units as well as detect and reject unit unbalanced equations. JSim also imports the SBML and CellML model archival formats. All JSim models are open source. Goals of the Physiome Project: - To develop and database observations of physiological phenomenon and interpret these in terms of mechanism (a fundamentally reductionist goal). - To integrate experimental information into quantitative descriptions of the functioning of humans and other organisms (modern integrative biology glued together via modeling). - To disseminate experimental data and integrative models for teaching and research. - To foster collaboration amongst investigators worldwide, to speed up the discovery of how biological systems work. - To determine the most effective targets (molecules or systems) for therapy, either pharmaceutic or genomic. - To provide information for the design of tissue-engineered, biocompatible implants. physiome, computational modeling, cell, organ, organism, human, model, physiological, pharmacological, pathological, model repository, sbml, cellml, biophysics, biochemistry, database, proteome, jsim simulation analysis system, data analysis tool, parameter optimization tool, integrating biological system has parent organization: University of Washington; Seattle; USA NSF BE08407;
NHLBI T15 HL88516-01;
NSF BES-0506477;
NHLBI R01HL073598;
NIBIB R01EB001973
nif-0000-00532 SCR_007379 National Simulation Resource Physiome Project 2026-08-21 12:38:22 3
Comprehensive Perl Archive Network
 
Resource Report
Resource Website
100+ mentions
Comprehensive Perl Archive Network (RRID:SCR_007253) data or information resource, portal, topical portal Welcome to CPAN, where you you will find All Things Perl. CPAN is the Comprehensive Perl Archive Network, a large collection of Perl software and documentation. You can begin exploring from either http://www.cpan.org/, http://www.perl.com/CPAN/ or any of the mirrors listed at http://www.cpan.org/SITES.html. Note that CPAN is also the name of a Perl module, CPAN.pm, which is used to download and install Perl software from the CPAN archive. This FAQ covers only a little about the CPAN module and you may find the documentation for it by using perldoc CPAN via the command line or on the web at http://search.cpan.org/dist/CPAN/lib/CPAN.pm. Sponsors: CPAN works with the generosity and cooperation of hundreds of developers, over 100 participating mirrors, funet.fi donating the network bandwidth, storage space and computing power, volunteers who help keep everything together and users whose interest in Perl keep the archive alive and growing. Keywords: Comprehension, Perl, Archive, Software, Documentation, is parent organization of: Catalyst Framework
is parent organization of: go-db-perl
is parent organization of: go-perl
is parent organization of: ONTO-PERL
is parent organization of: Generic GO Term Finder
nif-0000-30267 SCR_007253 CPAN 2026-08-21 12:38:20 102
Informatics resources for mouse functional genomics
 
Resource Report
Resource Website
Informatics resources for mouse functional genomics (RRID:SCR_007374) data or information resource, portal, topical portal Over recent years, the European Commission has supported an increasing number of functional genomics projects focusing on the use of the laboratory mouse as a model of human disease. (see http://www.prime-eu.org/euromouseiiprojects.htm for a fuller listing of current and recent projects). CASIMIR (Coordination and Sustainability of International Mouse Informatics Resources: http://www.casimir.org.uk) is aimed at recommending standards to allow data sharing and integration between the different projects. CASIMIR spans a number of areas: data representation (in particular the use of shared ontologies), non-semantic, technical issues concerning database compatibility and interoperability, data acquisition, curation and ownership, integration of biological collections and material resources into the data network, and user interactions. As part of the CASIMIR initiative i-mouse.org was created as a common portal to CASIMIR and other resources we hope will be helpful for investigators using the mouse as a model system for humans or systems biologists and geneticists using the mouse as an experimental system. ontology; metadata; nif-0000-00364 SCR_007374 I-Mouse 2026-08-21 12:38:15 0
T-One weighted Perfusion imaging Parameter CAlculation Toolkit
 
Resource Report
Resource Website
1+ mentions
T-One weighted Perfusion imaging Parameter CAlculation Toolkit (RRID:SCR_007376) data processing software, image processing software, software application, software resource TOPPCAT stands for T-One weighted Perfusion imaging Parameter CAlculation Toolkit. TOPPCAT creates quantitative maps of Ktrans (volume transfer constant between blood plasma and the extravascular extracellular space) and fPV (fractional plasma volume) from dynamic T1-weighted perfusion images. At the current time, analysis using the method of Patlak plots (most appropriate for first pass dynamic contrast-enhanced MR imaging) is supported. As a preliminary step for the parameter calculation, TOPPCAT also creates maps of T1 and S0 (equilibrium magnetization) from multi-flip angle T1-weighted SPGR (or FLASH) sequences.Daniel P. Barboriak, James R. MacFall, Anthony O. Padua,Gerald E. York, Benjamin L. Viglianti, and Mark W. Dewhirst. Standardized software for calculation of Ktrans and vp from dynamic T1-weighted MR images. Presented at the International Society for Magnetic Resonance in Medicine Workshop on MR in Drug Development: From Discovery to Clinical Therapeutic Trials, McLean VA, April 2004. has parent organization: Duke University; North Carolina; USA nif-0000-00349 SCR_007376 TOPPCAT 2026-08-21 12:38:21 2
EMBOSS CpGPlot/CpGReport/Isochore
 
Resource Report
Resource Website
1+ mentions
EMBOSS CpGPlot/CpGReport/Isochore (RRID:SCR_007254) data or information resource, portal, topical portal This portal allows for the detection of regions of genomic sequences that are rich in the CpG pattern is important because such regions are resistant to methylation and tend to be associated with genes which are frequently switched on. Regions rich in the CpG pattern are known as CpG islands. The function of the program cpgplot is to plot CpG rich areas, and cpgreport to report all CpG rich regions. The nuclear genomes of vertebrates are mosaics of isochores, very long stretches of DNA that are homogeneous in base composition and are compositionally correlated with the coding sequences that they embed. Isochores can be partitioned in a small number of families that cover a range of GC levels. Program isochore plots GC content over a sequence. Sponsors: This resource is supported by European Bioinformatics Institute. Keywords: Software, Plotting, Pattern, CpG, Gene, Function, Isochore, DNA, Genome, Homogeneous, Coding, Sequence, Family, Sequencing, has parent organization: European Bioinformatics Institute nif-0000-30268 SCR_007254 EMBOSS 2026-08-21 12:38:13 5
Brain Architecture Management System
 
Resource Report
Resource Website
1+ mentions
Brain Architecture Management System (RRID:SCR_007251) BAMS controlled vocabulary, data or information resource, data repository, database, ontology, service resource, storage service resource Knowledge management system designed to handle neurobiological information at different levels of organization of vertebrate nervous system. Database and repository for information about neural circuitry, storing and analyzing data concerned with nomenclature, taxonomy, axonal connections, and neuronal cell types. Handles data and metadata collated from original literature, or inserted by scientists that is associated to four levels of organization of vertebrate nervous system. Data about expressed molecules, neuron types and classes, brain regions, and networks of brain regions. neurobiology, vertebrate, nervous, system, database, repository, neural, circuitry, analysis, data, nomenclature, taxonomy, axonal, connection, cell, is used by: NIF Data Federation
is used by: Integrated Nervous System Connectivity
is related to: Integrated Manually Extracted Annotation
has parent organization: University of Southern California; Los Angeles; USA
is parent organization of: BAMS Nested Regions
is parent organization of: BAMS Connectivity
is parent organization of: BAMS Cells
is parent organization of: BAMS Neuroanatomical Ontology
Human Brain Project ;
NIBIB ;
NIMH MH61223;
NINDS NS16686;
NINDS NS50792
Restricted nif-0000-00018 http://brancusi.usc.edu/bkms/ SCR_007251 Brain Architecture Management System, The Brain Architecture Management System 2026-08-21 12:38:05 6
NeuroLens
 
Resource Report
Resource Website
10+ mentions
NeuroLens (RRID:SCR_007372) NeuroLens data processing software, data visualization software, image analysis software, image processing software, software application, software resource An integrated environment for the analysis and visualization of functional neuroimages. It is intended to provide extremely fast and flexible image processing, via an intuitive user interface that encourages experimentation with analysis parameters and detailed inspection of both raw image data and processing results. All processing operations in NeuroLens are built around a Plugin architecture, making it easy to extend its functionality. NeuroLens runs on Apple computers based on the G4, G5, or Intel chipsets and running MacOSX 10.4 (Tiger) or later. It is available free for academic and non-profit research use. * Operating System: MacOS * Programming Language: Objective C * Supported Data Format: AFNI BRIK, ANALYZE, COR, DICOM, MGH/MGZ, MINC, Other Format image-to-image, linear, temporal convolution - deconvolution, multivariate analysis, neuroimaging, fmri, brain structure, neural structure, brain, temporal convolution, temporal deconvolution, afni brik, analyze, cor, dicom, image display, macos, mgh/mgz, minc, magnetic resonance, objective c, registration, regression, rendering, software, spatial transformation, statistical operation, surface rendering, temporal transformation, three dimensional display, visualization is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
has parent organization: University of Montreal; Quebec; Canada
MGH CSRL License, - free for academic and non-profit research use. nif-0000-00333 http://www.nitrc.org/projects/nldo SCR_007372 2026-08-21 12:38:08 10

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  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.