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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Bruker: INSCOPIX nVista Resource Report Resource Website 10+ mentions |
Bruker: INSCOPIX nVista (RRID:SCR_017407) | instrument resource | Miniature microscope for imaging calcium activity in neural circuits by Inscopix, Inc. Allows to record real-time brain cell activity and calcium signaling in deep brain regions while the animal moves freely. | Minature, microscope, imaging, calcium, activity, neural, circuit, Inscopix Inc, | PMID:26914316 | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_017407.pdf | https://support.inscopix.com/products/nVista | SCR_017407 | SciCrunch Registry | , INSCOPIX nVista, nVista 3.0, nVista, nVista 2.0 | 2026-09-26 02:15:58 | 15 | |||||||
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graynet Resource Report Resource Website 1+ mentions |
graynet (RRID:SCR_017406) | data analysis software, data processing software, network analysis software, software application, software resource | Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications. | Subject, wise, network, morphometric, feature, structural, MRI, neuroscience, connectivity | DOI:10.21105/joss.00924 | Free, Available for download, Freely available | SCR_017406 | SciCrunch Registry | 2026-09-26 02:15:58 | 3 | ||||||||||
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StatView Version 5.0 Resource Report Resource Website 100+ mentions |
StatView Version 5.0 (RRID:SCR_017411) | data analysis software, data processing software, software application, software resource | Software package for statistical analysis by SAS Institute Inc, Cary, NC. | Statistical, analysis, SAS Institute Inc, , | SCR_017411 | SciCrunch Registry | 2026-09-26 02:15:58 | 204 | ||||||||||||
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Mass spectrometry imaging workbench Resource Report Resource Website 100+ mentions |
Mass spectrometry imaging workbench (RRID:SCR_017410) | data analysis software, data processing software, software application, software resource | Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging. | Analysis, mass, spectrometry, imaging, data, Galaxy, framework, imzML, file, quality, control, visualization, statistics, docker, container | is related to: University of Freiburg; Baden-Wurttemberg; Germany | DOI:10.1101/628719 | Free, Available for download, Freely available | https://github.com/foellmelanie/docker-galaxy-msi, https://galaxyproject.org/use/msi/ | SCR_017410 | SciCrunch Registry | 2026-09-26 02:16:01 | 105 | ||||||||
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University of North Carolina Charlotte Bioinformatics Services Division Resource Report Resource Website |
University of North Carolina Charlotte Bioinformatics Services Division (RRID:SCR_017182) | BiSD, UNC Charlotte BiSD | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource | Core to assist with analyzing and interpreting data produced by genomic technologies. | bioinformatics, analysis, data, genomic | Open | SCR_017182 | SciCrunch Registry | , Charlotte, University of North Carolina, BiSD, Bioinformatics Services Division, UNC | 2026-09-26 02:15:55 | 0 | |||||||||
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City of Hope National Medical Center Integrative Genomics and Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
City of Hope National Medical Center Integrative Genomics and Bioinformatics Core Facility (RRID:SCR_017188) | IGBC | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource | Core provides genomic and bioinformatics services to City of Hope Comprehensive Cancer Center (COHCCC) investigators. | bioinformatics, genomic, data, analysis, service, next, sequencing | Restricted | SCR_017188 | SciCrunch Registry | , City of Hope, Integrative Genomics and Bioinformatics Core, Bioinformatics Core Facility, National Medical Center, IGBC | 2026-09-26 02:15:57 | 1 | |||||||||
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Harvard School of Public Health Microbiome Analysis Core Facility Resource Report Resource Website |
Harvard School of Public Health Microbiome Analysis Core Facility (RRID:SCR_017187) | HSPH Microbiome Analysis Core | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource | Core assists with consultation for microbiome project development, provides validated meta omic analysis of microbial community data, and supports fully collaborative grant funded investigations. | bioinformatics, consulting, microbiome, omic, data, analysis | has parent organization: Harvard University; Cambridge; United States | Open | SCR_017187 | SciCrunch Registry | , HSPH, Harvard School of Public Health, Microbiome Analysis, facility, Core | 2026-09-26 02:15:55 | 0 | ||||||||
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T1D Exchange Biobank Resource Report Resource Website 1+ mentions |
T1D Exchange Biobank (RRID:SCR_017195) | biobank, data or information resource, material storage repository, service resource, storage service resource | Collection of biological samples linked to participant medical data from individuals living with type 1 diabetes. Unifies samples and data from eight different clinical studies related to type 1 diabetes. | collection, biological, sample, data, clinical, diabetes |
is related to: Type 1 Diabetes Knowledge Portal has parent organization: T1D Exchange |
Type 1 diabetes, Diabetes | Restricted | SCR_017195 | SciCrunch Registry | 2026-09-26 02:15:56 | 2 | |||||||||
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matemaker Resource Report Resource Website 1+ mentions |
matemaker (RRID:SCR_017199) | data analysis software, data processing software, sequence analysis software, software application, software resource, standalone software | Software tool to make artificial mate pairs from long sequences for scaffolding. | artificial, mate, pair, long, sequence, scaffolding, genomics, genome, assembly | Free, Available for download, Freely available | SCR_017199 | SciCrunch Registry | matemaker v1.0.0 | 2026-09-26 02:15:56 | 4 | ||||||||||
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BPC Instruments: Biomethane Potential Test Resource Report Resource Website |
BPC Instruments: Biomethane Potential Test (RRID:SCR_017319) | BMP, BMP Test, AMPTS | instrument resource | Automatic Methane Potential Test System (AMPTS) II is analytical tool for conducting various anaerobic batch fermentation tests. This includes performing, with up to 15 test vials, biochemical methane potential (BMP) tests, anaerobic biodegradability studies, specific methanogenic activity (SMA) assays, as well as conducting residual gas potential (RGP) analyses on digested slurry. | Anaerobic digestion, waste to energy, waste management, renewable energies, biogas, biomethane, modelling, University of Johannesburg (UJ), UJ-PEETS, Quantification, characterization, analysis, AI-2 import system permease protein lsrC | has parent organization: University of Johannesburg; Johannesburg; South Africa | DST ; NRF ; SME ; TIA ; UNESCO ; WRC |
https://www.uj.ac.za/faculties/febe/peets | SCR_017319 | SciCrunch Registry | , Automatic Methane Potential Test System (AMPTS) II, Biomethane Potential Test System, Automatic Methane Potential Test System | 2026-09-26 02:15:57 | 0 | |||||||
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SleepTrip Resource Report Resource Website 10+ mentions |
SleepTrip (RRID:SCR_017318) | data analysis software, data processing software, software application, software resource | Software as branch of FieldTrip with added functionality for sleep analyses, like calculating sleep tables, descriptives, ploting hypnograms, detecting slow waves, sleep spindles, REMS and their cooccurrence etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | slow, wave, oscillation, spindle, cooccurrence, rapid, eye, movements, sleep table, hypnogram |
is related to: SpiSOP works with: FieldTrip |
THIS RESOURCE IS NO LONGER IN SERVICE | https://github.com/Frederik-D-Weber/sleeptrip | SCR_017318 | SciCrunch Registry | SpiSOP | 2026-09-26 02:15:57 | 16 | ||||||||
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Open Ephys: Pulse Pal Resource Report Resource Website 1+ mentions |
Open Ephys: Pulse Pal (RRID:SCR_017203) | instrument resource | Open source pulse train generator that allows users to create and trigger software defined trains of voltage pulses with high temporal precision. Generates precisely timed pulse sequences for use in research involving electrophysiology or psychophysics. | instrument, generator, stimulation, voltage, puls, sequence, electrophysiology, psychophysics | McKnight Foundation ; NIMH R01 MH097061; NINDS R01 NS07553 |
DOI:10.3389/fneng.2014.00043 | Available for purchase | https://sanworks.io/shop/viewproduct?productID=1102, https://github.com/sanworks/PulsePal, https://sites.google.com/site/pulsepalwiki/specifications?authuser=0 | SCR_017203 | SciCrunch Registry | Pulse Pal v2 | 2026-09-26 02:15:56 | 2 | |||||||
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Keyence: BZ X-710 fluorescent microscope Resource Report Resource Website 10+ mentions |
Keyence: BZ X-710 fluorescent microscope (RRID:SCR_017202) | instrument resource | All in one fluorescence microscope BZ-X710 by Keyence, Japan. | instrument, fluorescence, microscope, Keyence | Available for purchase | https://www.keyence.com/products/microscope/fluorescence-microscope/bz-x700/models/bz-x710/ | SCR_017202 | SciCrunch Registry | 2026-09-26 02:15:58 | 25 | ||||||||||
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VETA Resource Report Resource Website 1+ mentions |
VETA (RRID:SCR_017201) | data acquisition software, data analysis software, data processing software, data visualization software, software application, software resource | Software suite of functions for EMG data visualization and processing. Open source Matlab toolbox for electromyography combined with transcranial magnetic stimulation. MATLAB toolbox for the collection, analysis, and visualization of EMG and TMS. | Electromyography, transcranial, magnetic, stimulation, analysis, EMG, TMS, data, bio.tools |
is listed by: Debian is listed by: bio.tools |
NCATS TR002370 | PMID:31572120 | Free, Available for download, Freely available | BioTools:VETA, biotools:VEtA | https://github.com/greenhouselab/Veta/tree/master/data, https://bio.tools/VETA, https://bio.tools/VETA, https://bio.tools/VETA | SCR_017201 | SciCrunch Registry | 2026-09-26 02:15:56 | 2 | ||||||
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Mediation Analysis of Causality under Confounding Resource Report Resource Website |
Mediation Analysis of Causality under Confounding (RRID:SCR_017442) | MACC | data analysis software, data processing software, software application, software resource | Software package to perform causal mediation analysis under confounding or correlated errors. Includes single level mediation model, two level and three level mediation model for data with hierarchical structures. Under two or three level mediation model, correlation parameter is identifiable and is estimated based on hierarchical likelihood, marginal likelihood or two stage method. | Casual, mediation, analysis, confounding, correlated, error, data, hierarchical, structure, parameter, BRAIN Initiative |
is recommended by: BRAIN Initiative is listed by: CRAN |
NIBIB EB022911 | Free, Available for downloads, Freely available | SCR_017442 | SciCrunch Registry | Mediation Analysis of Causality under Confounding, macc | 2026-09-26 02:16:02 | 0 | |||||||
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NEURON Resource Report Resource Website 100+ mentions |
NEURON (RRID:SCR_017449) | simulation software, software application, software resource | Software for computational neurophysiology. Simulation environment is used for building and using computational models of neurons and networks of neurons. NEURON Users Group can participate in collaborative development of documentation, tutorials, and software. | Computational, neurophysiology, model, neuron, network, building, BRAIN Initiative |
is recommended by: BRAIN Initiative has parent organization: Yale University; Connecticut; USA |
NIBIB EB022903 | Free, Available for download, Freely available | https://github.com/neuronsimulator/nrn | SCR_017449 | SciCrunch Registry | 2026-09-26 02:15:59 | 244 | ||||||||
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Agilent: G2565CA Microarray Scanner Resource Report Resource Website 1+ mentions |
Agilent: G2565CA Microarray Scanner (RRID:SCR_017206) | instrument resource | Microarray Scanner is part of microarray analysis solution from Agilent Technologies. Laser induced fluorescence scanner designed to read microarrays printed on standard slides. Measures fluorescence intensity of labeled sample nucleic acid bound to microarrays. | microarray, analysis, Agilent, scanner, slide, fluorescence, intensity, nucleic, acid, sample | Available for purchase | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_017206.pdf | SCR_019384, Model_Number_2565CA | https://www.agilent.com/cs/library/usermanuals/Public/G2505-90019_ScannerC_User.pdf | https://www.chem-agilent.com/contents.php?id=1000947 | SCR_017206 | SciCrunch Registry | 2026-09-26 02:15:58 | 1 | |||||||
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Rice_HxD_Recovery_Metabolomics Resource Report Resource Website 1+ mentions |
Rice_HxD_Recovery_Metabolomics (RRID:SCR_017204) | data analysis software, data processing software, data visualization software, software application, software resource, source code | Software tool as source code used in analysis of GC MS data from rice samples. Workflow for statistical analysis of GC MS data from field grown rice collected during rewatering after exposure to combined drought and heat stress. | analysis, GC-MS, data, rice, sample, statistics, workflow | Free, Available for download, Freely available | SCR_017204 | SciCrunch Registry | 2026-09-26 02:15:56 | 1 | |||||||||||
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Marshall Scientific: PTC-150 MiniCycler Resource Report Resource Website |
Marshall Scientific: PTC-150 MiniCycler (RRID:SCR_017214) | instrument resource | Mini Thermal Cycler PCR is compact thermal scanner, catalog number PTC-150 Cycler with Hot Bonnet heated lid for oil free cycling by MJ Research. | Instrument, PCR, mini, thermal, cycler, heated, lid, oil, free, MJ Research | Available for purchase | https://www.marshallscientific.com/v//vspfiles/files/manuals/PTC150.pdf | SCR_017214 | SciCrunch Registry | 2026-09-26 02:15:58 | 0 | ||||||||||
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Seizure-Waves Resource Report Resource Website |
Seizure-Waves (RRID:SCR_017455) | data analysis software, data processing software, software application, software resource | Analysis and modeling code for waves of seizure activity. | Analysis, modeling, wave, seizure, brain, activity, BRAIN Initiative | is recommended by: BRAIN Initiative | NSF 1451384 | Free, Freely available | SCR_017455 | SciCrunch Registry | SeizureWaves, Seizure Waves, Seizure-Waves | 2026-09-26 02:15:59 | 0 |
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