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https://github.com/Aswendt-Lab/AIDAhisto

Software atlas based imaging data analysis tool for quantitative mouse brain histology. Can automatically detect cells in histological mouse brain and spinal cord sections of interest.

Proper citation: AIDAhisto (RRID:SCR_023818) Copy   

•   Source: SciCrunch Registry
  

https://mass-spec.stanford.edu/instruments

Agilent 6495C triple quadrupole LC/MS system increases capacity and sensitivity for targeted quantitation applications. Used to investigate more diverse and biologically relevant groups of targeted peptides, small molecules and metabolites in single experiment without compromising sensitivity, quantitative accuracy, or linearity.

Proper citation: Agilent: 6495 Triple Quadrupole LC/MS (RRID:SCR_023937) Copy   

•   Source: SciCrunch Registry
  

https://github.com/rrwick/Deepbinner

Software tool for demultiplexing barcoded Oxford Nanopore sequencing reads.Signal level demultiplexer for Oxford Nanopore reads.

Proper citation: Deepbinner (RRID:SCR_024001) Copy   

•   Source: SciCrunch Registry
  

http://www.ctsim.org

Software tool to simulate process of transmitting X-rays through phantom objects. Reconstructs original phantom image from projections. Has wide array of image analysis and image processing functions.

Proper citation: CTSim (RRID:SCR_024004) Copy   

•   Source: SciCrunch Registry
  

https://www.malvernpanalytical.com/en/support/product-support/software/microcal-peaq-itc-analysis-software-v141

Software application for isothermal titration calorimetry performed on MicroCal PEAQ instrument by Malvern.

Proper citation: Malvern Panalytical MicroCal PEAQ-ITC analysis (RRID:SCR_023795) Copy   

•   Source: SciCrunch Registry
  

https://www.leica-microsystems.com/products/thunder-imaging-systems/p/thunder-imager-3d-live-cell/

Advanced widefield microscope enabling use of 3D specimens with camera based fluorescence microscopes. System ensures low phototoxicity and photobleaching, i.e., higher throughput with optimal conditions.

Proper citation: Leica: Thunder Imager Live Cell system (RRID:SCR_023794) Copy   

•   Source: SciCrunch Registry
  

https://www.ulethbridge.ca/

University of Lethbridge with campuses in Lethbridge and Calgary, is one of Canada"s leading research institutions.

Proper citation: University of Lethbridge; Alberta; Canada (RRID:SCR_023792) Copy   

•   Source: SciCrunch Registry
  

https://www.cdc.gov/cancer/hpv/statistics/cases.htm

Portal provides HPV-associated cancer statistics. Population based data from cancer tissue to estimate percentage of these cancers that are caused by HPV. Portal provides number of HPV-Attributable Cancer Cases per Year.

Proper citation: Centers for Disease Control and Prevention HPV-Associated Cancer (RRID:SCR_023944) Copy   

•   Source: SciCrunch Registry
  

https://pathvisio.org/

Software visualization tool for biological pathways. Pathway analysis and drawing software which allows drawing, editing, and analyzing biological pathways. Developed in Java and can be extended with plugins.

Proper citation: PathVisio (RRID:SCR_023789) Copy   

•   Source: SciCrunch Registry
  

https://hints.cancer.gov/

Regularly collects nationally representative data about American public’s knowledge of, attitudes toward, and use of cancer and health related information. HINTS data are used to monitor changes in fields of health communication and health information technology and to create more effective health communication strategies across different populations. Weighted, nationally representative probability based survey of civilian, non-institutionalized adults administered by National Cancer Institute on knowledge of and attitudes toward cancer relevant information.

Proper citation: Health Information National Trends Survey (RRID:SCR_023943) Copy   

•   Source: SciCrunch Registry
  

https://www.eneuro.org/content/9/5/ENEURO.0099-22.2022

Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed.

Proper citation: Customized Guide Cannulas (RRID:SCR_023941) Copy   

•   Source: SciCrunch Registry
  

https://github.com/Nexusger/AllenMouseBrainImageLoader

Respository contains two small software tools which render annotation and images of the Allen Mouse Brain Atlas. Both tools generate 1304 images of the Mouse Brain (456 sagital, 528 coronal and 320 axial).

Proper citation: Allen Mouse Brain ImageLoader (RRID:SCR_023827) Copy   

•   Source: SciCrunch Registry
  

http://krasnow1.gmu.edu/CENlab/software.html

Stochastic reaction-diffusion simulator in Java which is used for simulating neuronal signaling pathways.

Proper citation: NeuroRD (RRID:SCR_014769) Copy   

•   Source: SciCrunch Registry
  

https://www.comsol.com/comsol-multiphysics

General-purpose software platform for modeling and simulating physics-based problems which accounts for coupled or multiphysics phenomena. The platform includes a set of core physics interfaces for common physics application areas such as structural analysis, laminar flow, pressure acoustics, transport of diluted species, electrostatics, electric currents, heat transfer, and Joule heating.

Proper citation: COMSOL Multiphysics (RRID:SCR_014767) Copy   

•   Source: SciCrunch Registry
  

http://www.ccdc.cam.ac.uk/free_services/relibase_free

Web-based system for searching and analysing protein-ligand structures in the Protein Data Bank (PDB). The database provides an easily accessible web-browser interface and clear 3D structure visualisation that allows for 3D protein-ligand interaction searches, automatic superimposition and detailed analysis of related binding sites to identify protein flexibility, ligand overlap, and conserved water positions.

Proper citation: Relibase (RRID:SCR_014888) Copy   

•   Source: SciCrunch Registry
  

https://github.com/HussainiLab/BatchTINTV3

GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT. This GUI allows the user to define a directory. Within this directory it will be continuously (unless closed) searching for new files to analyze via TINT.

Proper citation: BatchTINT (RRID:SCR_014804) Copy   

•   Source: SciCrunch Registry
  

https://www.gvkbio.com/

Collection of databases with standalone databases, which gives opportunity for customers to integrate the data into their internal tools and databases, as well as online databases, that are available to the customers from a dedicated website where an individual can query and export the data in the selected format. The standalone database topics include medicinal chemistry, drugs and target class based compounds. The online databases are comprised of three major compilations: GVK BIO Online Structure Activity Relation Database (GOSTAR), GVK BIO Biomarker Database (GOBIOM), and Clinical Trial Outcome Database (CTOD).

Proper citation: GVKBIO databases (RRID:SCR_014893) Copy   

•   Source: SciCrunch Registry
  

http://www.chemnavigator.com/

Database of commercially accessible screening compounds from international chemistry suppliers. iResearchLibrary is updated on a weeky basis and offers support for creating internal screening libraries containing commercially accessible compounds, developing exploratory and targeted libraries, selecting commercially accessible compounds for SAR, lead expansion, and hit follow-up projects, and using structures for pharmacophore searching, virtual screening and other computational work.

Proper citation: iResearch Library (RRID:SCR_014890) Copy   

•   Source: SciCrunch Registry
  

http://www.lsm.tugraz.at/pcsim/

Software tool for simulating heterogeneous networks composed of different model neurons and synapses. It is intended to simulate networks containing up to millions of neurons and on the order of billions of synapses by distributing the network over different nodes of a computing cluster by using MPI.

Proper citation: PCSIM (RRID:SCR_014770) Copy   

•   Source: SciCrunch Registry
  

http://thomsonreuters.com/products_services/science/science_products/a-z/world_drug_index/

Database of marketed and developed drugs indexed with internationally-recognized drug names, synonyms, trade names, trivial names and trial preparation codes in one source, plus compound structures and activity data. Each record has chemical structure and is classified by drug activity, mechanism of action, treatment, manufacturer, synonyms, medical nformation and literature references.

Proper citation: World Drug Index (RRID:SCR_014891) Copy   

•   Source: SciCrunch Registry