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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Navios Software Resource Report Resource Website 1+ mentions |
Navios Software (RRID:SCR_014421) | data acquisition software, data analysis software, data processing software, software application, software resource | Used in tandem with the Navios Flow Cytometer in order to acquire data for use in analyzing cellular characteristics. | flow cytometry, machine software, control software, data analysis software, data acquisition software, lymphocyte, multicolor | Commercial product | http://www.beckman.com/coulter-flow-cytometry/instruments/flow-cytometers/navios | SCR_014421 | SciCrunch Registry | Navios Tetra Software | 2026-09-26 02:15:25 | 3 | |||||||||
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BD Accuri C6 Plus Resource Report Resource Website 50+ mentions |
BD Accuri C6 Plus (RRID:SCR_014422) | data acquisition software, data analysis software, data processing software, software application, software resource | Software used for collecting and analyzing flow cytometry data. Files can be exported in FCS 3.1 format for import into other flow cytometry analysis programs such as FCS Express™ software and FlowJo™ software. | data analysis software, data acquisition software, flow cytometry, flow cytometry analysis program | Commercial product | SCR_014422 | SciCrunch Registry | 2026-09-26 02:15:25 | 56 | |||||||||||
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Cell Line Authentication Testing Resource Report Resource Website 1+ mentions |
Cell Line Authentication Testing (RRID:SCR_014504) | CLA | quality control testing; authentication testing | A material analysis service of the commercial organization Genetica DNA Laboratories which provides authentication of human cancer cell lines, stem cell lines and xenografts utilizing STR DNA technology. | str profiling, cell line authentication, genetica, cancer cell line, stem cell line, xenograft | is related to: Genetica DNA Laboratories | PMID:20614197 | Available to the research community, Commercial | SCR_014504 | SciCrunch Registry | Genetica DNA Laboratories Cell Line Authentication, cell line identification testing; cell authentication | 2026-09-26 02:15:26 | 4 | |||||||
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International Geo Sample Number Resource Report Resource Website 1+ mentions |
International Geo Sample Number (RRID:SCR_014505) | IGSN | data or information resource, identifier resolution, international standard specification, narrative resource, production service resource, service resource, standard specification | A persistent unique identifier for samples and specimens collected from the natural environment. IGSNs are created by the user and are case sensitive. They should be concise, machine readable, and non-derivable to ensure originality. IGSNs were created and are organized by the IGSN e.V., whose goal is to implement and promote standard methods for locating, identifying, and citing physical samples with confidence by operating an international IGSN registration service with a distributed infrastructure for use by and benefit to its members. | identifier, natural environment, geology, unique, identifying system | Available to participating members, IGSNs must be tagged in manuscripts | http://igsn.github.io http://igsn.github.io/syntax | SCR_014505 | SciCrunch Registry | International GeoSample Number, International Geo Sample Number (IGSN) | 2026-09-26 02:15:26 | 2 | ||||||||
|
I-TASSER Resource Report Resource Website 1000+ mentions |
I-TASSER (RRID:SCR_014627) | data analysis software, data processing software, software application, software resource | Web server as integrated platform for automated protein structure and function prediction. Used for protein 3D structure prediction. Resource for automated protein structure prediction and structure-based function annotation. | Automated prediction, protein structure prediction, protein function prediction, protein 3D structure, amino acid sequence, alignment, simulation, 3D atomic model, protein, bio.tools |
is listed by: bio.tools is listed by: Debian is listed by: SoftCite has parent organization: University of Michigan; Ann Arbor; USA has parent organization: University of Kansas; Kansas; USA |
NIGMS GM083107; NIGMS GM084222 |
DOI:10.1186/1471-2105-9-40 DOI:10.1093/nar/gkv342 PMID:20360767 PMID:18215316 |
Free, Available for download, Freely available | biotools:i-tasser, SCR_018803 | https://bio.tools/i-tasser | SCR_014627 | SciCrunch Registry | Iterative Threading Assembly Refinement, Iterative Threading ASSEmbly Refinement | 2026-09-26 02:15:27 | 3874 | |||||
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StatPlus Mac Resource Report Resource Website 100+ mentions |
StatPlus Mac (RRID:SCR_014635) | data analysis software, data processing software, software application, software resource | A statistical data analysis tool that works with Microsoft Excel and is designed especially for use in IOS systems. Tutorials and examples are provided within the program. | statistics, mac, ios, excel, data analysis, software | Available for download | SCR_014635 | SciCrunch Registry | StatPlus | 2026-09-26 02:15:28 | 195 | ||||||||||
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Clone Manager Software Resource Report Resource Website 10+ mentions |
Clone Manager Software (RRID:SCR_014521) | data processing software, simulation software, software application, software resource, workflow software | A software system to assist with cloning simulation, enzyme operations, and graphic map drawing. Clone Manager can also be used as a way to view or edit sequence files, find open reading frames, translate genes, or find genes or text in files. Clone Manager Professional is an upgraded version of Clone Manager Basic., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | workflow software, simulation software, enzyme, clone, cloning simulation, graphic map, sequence, view, edit | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014521 | SciCrunch Registry | 2026-09-26 02:15:26 | 49 | |||||||||||
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NIS-Elements Resource Report Resource Website 1000+ mentions Rating or validation data |
NIS-Elements (RRID:SCR_014329) | data analysis software, data processing software, software application, software resource, software toolkit | Microscope imaging software suite used with Nikon products. NIS-Elements includes software applications for advanced and standard research, documentation, confocal microscopy, and high-content analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | element, microscope imaging software, software suite, nikon |
is listed by: SoftCite works with: Nikon: ECLIPSE Ti2 inverted microscope |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014329 | SciCrunch Registry | Nikon Instruments Software Elements, NIS Elements, Nikon Instruments Software | 2026-09-26 02:15:24 | 3515 | |||||||||
|
IMAGIC Resource Report Resource Website 100+ mentions |
IMAGIC (RRID:SCR_014447) | data processing software, image analysis software, image processing software, software application, software resource | An image analysis software that can process spectra and other multi-dimensional data-sets. The software package is aimed at processing large data sets from (cryo-) electron microscopy, especially in the field of single particle analyses. This software can be used with light and raster-tunneling microscopes, computer tomographs, FT-IR spectrometers and other signal collecting devices. This resource provides three-dimensional data processing and angular reconstitution modules that allow the three-dimensional reconstruction with point-group symmetry from the two dimensional electron microscopy projections. These models aid in the analysis of the macromolecules. | image analysis, spectra, multi-dimensional data, macromolecule, 3d processing, tomograph, spectrometer, software environment | is listed by: SoftCite | PMID:8742718 | Commercial, Account needed for download | SCR_014447 | SciCrunch Registry | 2026-09-26 02:15:25 | 217 | |||||||||
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Med Associates Video Freeze Software Resource Report Resource Website 50+ mentions |
Med Associates Video Freeze Software (RRID:SCR_014574) | data acquisition software, data processing software, software application, software resource | Automation software used to analyze fear behavior in rodents. Freezing is represented in the data file in several different ways, including the total time the subject spends motionless during the session, the percent of time motionless, the number of freezing episodes or occurrences, or as an average index of motion. | rodent, freeze, fear, data acquisition, data acquisition software | Commercial | SCR_014574 | SciCrunch Registry | 2026-09-26 02:15:27 | 72 | |||||||||||
|
AMT Image Capture Software Resource Report Resource Website 1+ mentions |
AMT Image Capture Software (RRID:SCR_014333) | data acquisition software, data processing software, image acquisition software, image analysis software, image processing software, software application, software resource | AMT camera system software that performs digital image acquisition, processing, and storage. An operations manual and software specifications are available on the main site. | camera operating software, system management software, digital image acquisition, digital image processing, digital image storage | Only for AMT camera systems | SCR_014333 | SciCrunch Registry | 2026-09-26 02:15:24 | 5 | |||||||||||
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Macrogen Resource Report Resource Website 5000+ mentions |
Macrogen (RRID:SCR_014454) | analysis service resource, biomaterial analysis service, material analysis service, production service resource, service resource | A company that provides a variety of next generation sequencing services. The company provides researchers with whole genome resequencing, exome sequencing, targeted sequencing, transcriptomics, and epigenome sequencing. | sequencing assay, sequencing analysis software, next generation sequencing | is affiliated with: Axeq Technologies | Commercial entity | SCR_014454 | SciCrunch Registry | Macrogen Inc. | 2026-09-26 02:15:25 | 6322 | |||||||||
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Desmond Resource Report Resource Website 500+ mentions |
Desmond (RRID:SCR_014575) | simulation software, software application, software resource | Software designed to perform high-speed molecular dynamic simulations of biological systems on conventional commodity clusters, supercomputers and GPUs. This code uses novel parallel algorithms and numerical techniques to achieve high performance and accuracy on platforms with a large number of processors. It can be used with a single computer. | simulation, supercomputer, commodity cluster, gpu, parallel algorithm, biological system, parallel algorithms, computer, processor | is used by: CHARMM-GUI | Open source, Free for non-commercial use, Commercial entities must contact Schrodinger LLC | SCR_014575 | SciCrunch Registry | 2026-09-26 02:15:27 | 946 | ||||||||||
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BRAINS Imagebank Resource Report Resource Website 10+ mentions |
BRAINS Imagebank (RRID:SCR_014576) | data or information resource, database, image collection | A searchable collection of anonymised images and associated clinical data. It includes normal individuals at all ages (from prenatal to old age). The image bank contains integrated data sets already collected as part of research studies which include control subjects. New data is added as they become available. | database, image collection, brain, normal, control, human, integrated data set | is hosted by: University of Edinburgh; Scotland; United Kingdom | Registration required | SCR_014576 | SciCrunch Registry | Brain Images of Normal Subjects (BRAINS) Imagebank, Brain Images of Normal Subjects Imagebank | 2026-09-26 02:15:27 | 12 | |||||||||
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Biobserve Viewer Resource Report Resource Website 10+ mentions |
Biobserve Viewer (RRID:SCR_014337) | data acquisition software, data analysis software, data processing software, software application, software resource | Software that provides subject tracking with body axis alignment and angle of view, which is then used to track body, nose and tail movements without marking the animal. Users may create the scoring system used by the software, as well as zones to observe, quantify, and compare the behavior of an animal in one or more areas. The software features several data acquisition and analysis tools to gather and interpret the data. | mouse, animal tracking, behavior, data acquisition software, data analysis software | Pay for product | SCR_014337 | SciCrunch Registry | Bio Observe Viewer | 2026-09-26 02:15:24 | 12 | ||||||||||
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Odyssey CLx Resource Report Resource Website 100+ mentions |
Odyssey CLx (RRID:SCR_014579) | data analysis software, data processing software, software application, software resource | A data analysis software developed to simplify and record data from fluorescent related assays such as Western Blots, EMSAs, and Western Assays. This software will consolidate all of the resulting data into one easy-to-track image, and thus removes the need for multiple exposures, as well as standardizing the resulting fluorescent bands without image saturation, blowout, or removed sensitivity. Odyssey CLx is capable of scanning multiple mini-blots, microplates, or slides at the same time. | data analysis software, data processing software, fluorescence, software, band, image saturation, single image, western blot, emsa, western assay, image tracking, data simplification, sensitivity | has parent organization: LI-COR Biosciences | Commercial, Paired with a Scanning System | SCR_014579 | SciCrunch Registry | Odyssey CLx Imaging System | 2026-09-26 02:15:27 | 137 | |||||||||
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Image Reader LAS-1000 Resource Report Resource Website 10+ mentions |
Image Reader LAS-1000 (RRID:SCR_014585) | data acquisition software, data processing software, software application, software resource | A software which is used to control the LAS-1000plus luminescent image analyzer. This software adjusts the focus, exposure time, sensitivity, and cooling temperature, and will record the data after the sample is scanned. | image analyzer, exposure, focus, sensitivity, cooling temperature, data, software | Commercial, Paired with a scanning system | SCR_014585 | SciCrunch Registry | 2026-09-26 02:15:27 | 45 | |||||||||||
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Andor iQ Resource Report Resource Website 100+ mentions |
Andor iQ (RRID:SCR_014461) | data processing software, image analysis software, image processing software, software application, software resource | A live cell imaging software that allows for control of iXon EMCCD and sCMOS cameras in synchronized combination with a number of additional imaging hardware devices. iQ can be used to run experiments to investigate dynamic processes in both single cells and multicellular systems, image fixed samples, and generate 3 dimensional image volumes for analysis. | image acquisition and analysis, iXon, sCMOS, EMCCD, live cell, 3d image | Public | SCR_014461 | SciCrunch Registry | 2026-09-26 02:15:25 | 255 | |||||||||||
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ClinProTools Resource Report Resource Website 100+ mentions |
ClinProTools (RRID:SCR_014341) | data acquisition software, data analysis software, data processing software, software application, software resource | Biomarker detection and evaluation software which provides an advanced basis for mining unknown potential biomarkers in complex protein profiles. Visualization tools such as stack plots and box-and-whiskers plots can be used to interactively inspect and compare large data sets originating from samples that contain different clinical diagnoses. ClinProTools also supplies sophisticated mathematical algorithms for the discovery of complex biomarker pattern models. Besides validation, class-prediction tools are also integrated to allow the implementation of the whole biomarker detection and evaluation process. | biomarker detection, biomarker evaluation, mining, visualization tools, large data set, biomarker pattern model | Pay for product | SCR_014341 | SciCrunch Registry | 2026-09-26 02:15:24 | 274 | |||||||||||
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PowerChrom Resource Report Resource Website 50+ mentions |
PowerChrom (RRID:SCR_014588) | data acquisition software, data analysis software, data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022. A software which collects, displays, and analyzes chromatographic signals. This software doesn't require any programming, and collects signals from one or two detectors. PowerChrom is supplied as part of the PowerChrom system, or separately for use with e-corder recording systems. | chromatography, chromatography data, no programming, e-corder, software, data acquisition, data analysis | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014588 | SciCrunch Registry | 2026-09-26 02:15:27 | 97 |
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