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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PMAP Resource Report Resource Website |
PMAP (RRID:SCR_000740) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23, 2022. A database of proteolytic pathways. Its goal is to contribute to the scientific community and the understanding of proteolysis by providing better tools and data to researchers and medical researchers. | proteolytic pathway, proteolysis, database, data | has parent organization: Sanford Burnham Prebys Medical Discovery Institute | PMID:18842634 PMID:16448029 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03318 | SCR_000740 | 2026-09-12 01:01:20 | 0 | ||||||||
|
Cancer Gene Index Resource Report Resource Website 1+ mentions |
Cancer Gene Index (RRID:SCR_001117) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on November 17, 2016. A database of genes that have been experimentally associated with human cancer diseases and/or pharmacological compounds, the evidence of these associations, and relevant annotations on the data. | gene, cancer, genetics, pharmacology, disease, database, data |
is listed by: OMICtools has parent organization: National Cancer Institute has parent organization: National Cancer Institute |
Cancer | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01575 | SCR_001117 | 2026-09-12 01:01:21 | 2 | ||||||||
|
EPDnew Resource Report Resource Website 10+ mentions |
EPDnew (RRID:SCR_002485) | HT-EPD, EPD | data or information resource, database | EPDnew databases are the result of merging Eukaryotic Promoter Database, EPD, promoters within house analysis of promoter specific high throughput data for selected organisms only. EPDnew is a set of species specific databases of experimentally validated promoters. | Promoter collection, eukaryotic promoter, promoter specific high throughput data, species specific data, experimentally validated promoter, promoter, data |
is listed by: OMICtools is related to: Eukaryotic Promoter Database is related to: Eukaryotic Promoter Database has parent organization: SIB Swiss Institute of Bioinformatics |
Swiss Government ; Swiss National Science Foundation |
PMID:27899657 PMID:23193273 |
Free, Available for download, Freely available | nif-0000-02806 | https://epd.expasy.org/ | SCR_002485 | , Eukaryotic Promoter Database, Eukaryotic Promoter Database new | 2026-09-12 01:01:26 | 27 | ||||
|
UniGene Resource Report Resource Website 1000+ mentions |
UniGene (RRID:SCR_004405) | UniGene | data or information resource, database, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Web tool for an organized view of the transcriptome. Collection of the computationally identified transcripts from the same locus. Information on protein similarities, gene expression, cDNA clones, and genomic location. System for automatically partitioning GenBank sequences into a non redundant set of gene oriented clusters. | colleciton, data, information, organized, view, transcriptome, locus, protein, similarity, gene, expression, |
is used by: Rank Rank Hypergeometric Overlap is listed by: OMICtools is listed by: re3data.org is related to: ProbeMatchDB 2.0 is related to: Bgee: dataBase for Gene Expression Evolution is related to: GeneSpeed- A Database of Unigene Domain Organization has parent organization: NCBI works with: Digital Differential Display (DDD) |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_41571, OMICS_01663, r3d100010774 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene, https://doi.org/10.17616/R35G7T | SCR_004405 | NCBI UniGene, Organized View of the Transcriptome, UniGene | 2026-09-12 01:01:31 | 1153 | ||||||
|
Transcriptional Regulatory Element Database Resource Report Resource Website 50+ mentions |
Transcriptional Regulatory Element Database (RRID:SCR_005661) | TRED | data or information resource, database | Collects mammalian cis- and trans-regulatory elements together with experimental evidence. Regulatory elements were mapped on to assembled genomes. Resource for gene regulation and function studies. Users can retrieve primers, search TF target genes, retrieve TF motifs, search Gene Regulatory Networks and orthologs, and make use of sequence analysis tools. Uses databases such as Genbank, EPD and DBTSS, and employ promoter finding program FirstEF combined with mRNA/EST information and cross-species comparisons. Manually curated. | Mammalian, cis, trans, regulatory, element, mapped, genome, gene, regulation, function, data, FASEB list |
uses: GenBank uses: Eukaryotic Promoter Database uses: DBTSS: Database of Transcriptional Start Sites has parent organization: Cold Spring Harbor Laboratory |
NCI ; NHGRI HG001696 |
PMID:17202159 | Free, Freely available | nif-0000-03585 | SCR_005661 | Transcriptional Regulatory Element Database | 2026-09-12 01:01:38 | 79 | |||||
|
Allen Brain Atlas Tools Resource Report Resource Website |
Allen Brain Atlas Tools (RRID:SCR_023855) | ABAT | software resource | Software stores mutiple MATLAB functions to read, analyze, and visualize various kinds of data from Allen Brain Atlas. | Allen Human Brain Atlas, MATLAB functions, Allen Brain Atlas data, data, read, analyze, visualize | is related to: Allen Institute for Brain Science | Free, Freely available | SCR_023855 | ABAT (Allen Brain Atlas Tools) | 2026-09-12 01:00:43 | 0 | ||||||||
|
EarthCube Resource Report Resource Website 1+ mentions |
EarthCube (RRID:SCR_024576) | data or information resource, portal, topical portal | Platform provides tools, data, services, apps and community resources for geoscience researchers. EarthCube community works together to influence how data will be collected accessed, analyzed, visualized, shared and archived; participate in interdisciplinary and collaborative research; and contribute to transformation of geoscience research through emerging practices of digital scholarship, data and software stewardship, and open science. | open science, geoscience, geoscience interdisciplinary and collaborative research, tools, data, services, apps, community resources, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.25352 | SCR_024576 | 2026-09-12 01:00:49 | 1 | |||||||||
|
California Coastal Atlas Resource Report Resource Website |
California Coastal Atlas (RRID:SCR_024554) | data or information resource, portal, topical portal | Resource designed to publish information and data about California coast reflecting current scientific understanding and data for the purpose of informing public policy and advancing the understanding of coastal processes. | California coast, water, climate, coastal processes, data, informing public policy, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.4246 | SCR_024554 | 2026-09-12 01:00:49 | 0 | |||||||||
|
Cerner Enviza Resource Report Resource Website |
Cerner Enviza (RRID:SCR_024435) | commercial organization | American healthcare company that provides data, analytics, and research to the life sciences industry, with particular focus on oncology and rare diseases. | Oracle, Cerner, data, analytics, oncology, rare disease, | SCR_024435 | 2026-09-12 01:00:47 | 0 | ||||||||||||
|
Allen Mouse Brain Reference Atlas Resource Report Resource Website 100+ mentions |
Allen Mouse Brain Reference Atlas (RRID:SCR_002978) | ABA, ARA, ABA Mouse Brain | atlas, data or information resource, reference atlas | Allen Mouse Brain Atlas includes full color, high resolution anatomic reference atlas accompanied by systematic, hierarchically organized taxonomy of mouse brain structures. Enables interactive online exploration of atlas and to provide deeper level of 3D annotation for informatics analysis and viewing in Brain Explorer 3D viewer. | 3D, map, gene, expression, data, adult, mouse, brain, interactive, image |
is used by: NIF Data Federation is used by: BICCN is related to: BrainStars is related to: PubAnatomy is related to: Integrated Brain Gene Expression is related to: Allen Brain Atlas API is related to: 3DBar is related to: aGEM is related to: CellTax vignette is related to: Blue Brain Cell Atlas is related to: Allen Mouse Brain Common Coordinate Framework is related to: SHARCQ is related to: Enhancer Trap Line Browser is related to: Linked Neuron Data has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas works with: MeshView works with: Brain Gene Expression Analysis toolbox works with: VisuAlign works with: MIRACL |
Free, Freely available | SCR_013286, nlx_21010, nif-0000-00508 | http://mouse.brain-map.org/atlas/index.html, http://mouse.brain-map.org/ | SCR_002978 | Allen Mouse Brain Reference Atlas, Allen Reference Atlases, ABA Adult Mouse Brain, ARA ontology | 2026-09-12 01:00:53 | 453 | ||||||
|
GenAge Resource Report Resource Website 100+ mentions |
GenAge (RRID:SCR_010223) | GenAge | data or information resource, database | Collection of annotated and manually curated data of genes related to aging divided into genes related to longevity and/or aging in model organisms (yeast, worms, flies, mice, etc.) and aging related human genes. | collection, curated, data, gene, aging, longevity |
is used by: GEROprotectors has parent organization: Human Ageing Genomic Resources |
Aging | HAGR''s lisense | nlx_156768 | SCR_010223 | GenAge, GenAge Database of Ageing-Related Genes, The Ageing Gene Database, Gene Database | 2026-09-12 01:02:03 | 157 | ||||||
|
Cerebellar Platform Resource Report Resource Website 1+ mentions |
Cerebellar Platform (RRID:SCR_001700) | Cerebellar Platform | software repository, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented January 13, 2022. Digital research archive for cerebellar research including mini-reviews of contemporary cerebellar research, list of papers and mathematical models for cerebellar operation. | electrophysiology, function, analysis, cerebellar, data, imaging, mathematical, model, molecular biology, paper, plasticity, program, review, script, structure, theory, book, cerebellum |
is used by: NIF Data Federation is related to: Integrated Software has parent organization: RIKEN Brain Science Institute |
Japan Society for the Promotion of Science | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10193 | SCR_001700 | 2026-09-12 01:02:26 | 1 | |||||||
|
Telethon Network of Genetic Biobanks Resource Report Resource Website 10+ mentions |
Telethon Network of Genetic Biobanks (RRID:SCR_004658) | TNGB | biomaterial supply resource, material resource | Network of non profit association of Italian repositories to form catalogue of biospecimens and associated data. Used to collect, process, preserve and distribute biological samples and related clinical data from individuals affected by rare diseases, their relatives or from healthy control individuals, with standards complying with Italian laws and international recommendations. You may browse sample catalogue by diagnosis or use advanced search option. Request for samples is granted only if project is in agreement with TNGB mission and after receiving signed material transfer agreement form. | Italian, repository, catalogue, biospeciment, data, collect, process, preserve, distribute, rare, disease |
is listed by: One Mind Biospecimen Bank Listing is affiliated with: EuroBioBank has parent organization: Telethon Foundation |
Italian Health Department ; Telethon Foundation |
PMID:24004821 | Restricted | nlx_65989 | SCR_004658 | Telethon Network of Genetic Biobanks | 2026-09-12 01:02:33 | 29 | |||||
|
Alzforum Antibody Directory for Neuroscience Research Resource Report Resource Website |
Alzforum Antibody Directory for Neuroscience Research (RRID:SCR_013601) | data or information resource, database | The Alzheimer Research Forum is the web''s most dynamic scientific community dedicated to understanding Alzheimer''s disease and related disorders. It also contains a database of providers of antibodies directed against several hundred molecules and proteins of relevant to research on Alzheimer and other neurodegenerative diseases. The web site reports on the latest scientific findings, from basic research to clinical trials; creates and maintains public databases of essential research data and reagents, and produces discussion forums to promote debate, speed the dissemination of new ideas, and break down barriers across the numerous disciplines that can contribute to the global effort to cure Alzheimer''s disease. The ARF team of professional science writers and editors, information technology experts, web developers and producers all work closely with our distinguished and diverse Advisory Board to ensure a high-quality of information and services. We very much welcome our readers'' participation in all aspects of the web site. Sponsors: The Alzheimer Research Forum is an independent nonprofit organization. It is supported by grants and individual donations. | alzheimer, antibody, clinical trail, community, data, disease, disorder, molecule, neurodegenerative, protein, reagent, research, science, scientific, technology | has parent organization: Alzheimer's Research Forum | nif-0000-00129 | SCR_013601 | Alzforum Antibody Directory | 2026-09-12 01:02:12 | 0 | |||||||||
|
Brain RNA-Seq Resource Report Resource Website 100+ mentions |
Brain RNA-Seq (RRID:SCR_013736) | data or information resource, database | Database containing RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of cerebral cortex. Collection of RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of mouse cerebral cortex. RNA-Seq of cell types isolated from mouse and human brain. | RNAseq, transcriptome, splicing, data, glia, neuron vascular, cell, cerebral, cortex, mouse, human, brain, FASEB list | has parent organization: Stanford University; Stanford; California | NIGMS T32GM007365; NIMH R01MH09955501; NINDS R01NS08170301 |
PMID:25186741 PMID:26687838 |
Free, Freely available | SCR_017483 | http://www.brainrnaseq.org/ | SCR_013736 | Barres Brain RNA-Seq | 2026-09-12 01:02:13 | 156 | |||||
|
TheCellMap Resource Report Resource Website 10+ mentions |
TheCellMap (RRID:SCR_018728) | data or information resource, database, service resource | Web accessible database for visualizing and mining global yeast genetic interaction network. Allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize sub networks, using data driven network layouts in intuitive and interactive manner. Used for storing and visualizing genetic interactions in S. cerevisiae. | Genetic interactions, genetic network, yeast genetics, synthetic genetic array, network visualization, annotation, data, genetic interaction visualization | has parent organization: University of Toronto; Ontario; Canada | Canadian Institutes of Health Research ; NHGRI R01 HG005084; NHGRI R01 HG005853; NSF DBI 0953881 |
PMID:28325812 | Free, Freely available | SCR_018728 | TheCellMap.org | 2026-09-12 01:02:19 | 41 | |||||||
|
PhenoDB Resource Report Resource Website 1+ mentions |
PhenoDB (RRID:SCR_016551) | data or information resource, database | Database for phenotype genotype associations for humans. Used by clinical researchers to store standardized phenotypic information, diagnosis, and pedigree data and then run analyses on VCF files from individuals, families or cohorts with suspected Mendelian disease. | store, standardized, phenotype, genotype, Mendelian disease, mutation, next, generation, sequencing, data | has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA | Mendelian disease | NHGRI | PMID:25684268 | Free, Registration required, Freely available for non commercial users | SCR_016551 | 2026-09-12 01:02:17 | 5 | |||||||
|
Danish Twin Registry Resource Report Resource Website 1+ mentions |
Danish Twin Registry (RRID:SCR_017482) | DTR | data or information resource, database | Twin registry to studying causes of cancer, gene inheritance and environment. Contains information on twins born in Denmark. Comprises twins born through more than 125 years. | Twin, cancer, data, gene, environment | Restricted | SCR_017482 | 2026-09-12 01:02:18 | 1 | ||||||||||
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Diversity Outbred Database Resource Report Resource Website 1+ mentions |
Diversity Outbred Database (RRID:SCR_018180) | data or information resource, database | Database provides access to genotype and phenotype data from experiments with Diversity Outbred mice. Data can be searched by publication, investigator, and data type and can be downloaded in zipped CSV or R/QTL2 formats. Users can download full studies or subset of samples, genotypes, clinical phenotypes and molecular phenotypes including transcript, proteomic, and metabolomic profiling data. | JAX, genetic diversity, genotype data, phenotype data, diversity outbred mice, genotype, clinical phenotype, molecular phenotype, proteomic, metabolomic, data | has parent organization: JAX Mice and Services | Free, Freely available | https://www.jax.org/research-and-faculty/genetic-diversity-initiative/tools-data/diversity-outbred-database | SCR_018180 | 2026-09-12 01:02:18 | 9 | |||||||||
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Codon and Codon-Pair Usage Tables Resource Report Resource Website 1+ mentions |
Codon and Codon-Pair Usage Tables (RRID:SCR_018504) | CoCoPUTs | data or information resource, database | Database includes genomic codon-pair and dinucleotide statistics of all organisms with sequenced genome. Facilitates genetic variation analyses and recombinant gene design. Derived from all available GenBank and RefSeq data. | Codon-pair, codon, nucleotide, gene, genomic codon pair, dinucleotide statistic, sequence, genetic variation, recombinant gene design, data |
is related to: GenBank is related to: RefSeq |
PMID:31029701 | Free, Freely available | SCR_018504 | 2026-09-12 01:02:19 | 6 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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