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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Alveole Leonardo Resource Report Resource Website 1+ mentions |
Alveole Leonardo (RRID:SCR_021940) | software resource | Photopatterning software to control PRIMO system including UV illumination module, microscope, camera and stage, and to precisely define experimental conditions.Used to design your own micropatterning manipulations. | Alvéole, control PRIMO system, micropatterning manipulations design | is related to: Alveole: PRIMO photopatterning module | Restricted | SCR_021940 | SciCrunch Registry | Alvéole Leonardo software, Leonardo software | 2026-10-31 12:18:17 | 2 | |||||||||
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Alveole: PRIMO photopatterning module Resource Report Resource Website 1+ mentions |
Alveole: PRIMO photopatterning module (RRID:SCR_021941) | PRIMO | instrument resource | Photopatterning device for performing micropatterning, microfabrication and hydrogel polymerization.Part of PRIMO system. | Alvéole, photopatterning module, micropatterning, microfabrication, hydrogel polymerization, instrument, equipment | is related to: Alveole Leonardo | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021941.pdf | SCR_021941 | SciCrunch Registry | Alvéole PRIMO, Alveole PRIMO | 2026-10-31 12:18:23 | 1 | |||||||
|
MeDuSa Resource Report Resource Website 50+ mentions |
MeDuSa (RRID:SCR_022058) | data access protocol, software resource, web service | Web server of multi draft based scaffolder.Exploits information obtained from set of genomes from related organisms to determine correct order and orientation of contigs. | Multi draft based scaffolder, genomes, related organisms, contigs, contigs correct order determination, contigs orientation determination | PMID:25810435 | Free, Freely available | SCR_022058 | SciCrunch Registry | Multi-Draft based Scaffolder | 2026-10-31 12:18:26 | 67 | |||||||||
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Narishige: PC 10 Puller Resource Report Resource Website 1+ mentions |
Narishige: PC 10 Puller (RRID:SCR_022057) | instrument resource | Vertical pipette puller to create microelectrodes from borosilicate capillaries. | Vertical pipette puller, microelectrodes, borosilicate capillaries, instrumente, equipment, USEDit | Restricted | SCR_022057 | SciCrunch Registry | Narishige PC-10 Puller | 2026-10-31 12:18:20 | 5 | ||||||||||
|
Zeitz: DMZ Universal Electrode Puller Resource Report Resource Website 1+ mentions |
Zeitz: DMZ Universal Electrode Puller (RRID:SCR_022056) | instrument resource | Horizontal pipette puller to pull and polish microelectrodes from borosilicate capillaries. | Zeitz-Instrumente Vertriebs GmbH, electrode puller, horizontal pipette puller, pull and polish microelectrodes, borosilicate capillaries, instrument, equipment, USEDit | is listed by: USEDit | Restricted | https://www.zeitz-puller.com/support/manual/ | SCR_022056 | SciCrunch Registry | DMZ Zeitz Puller | 2026-10-31 12:18:24 | 4 | ||||||||
|
ProQ3 Resource Report Resource Website 10+ mentions |
ProQ3 (RRID:SCR_021880) | data access protocol, software resource, web service | Improved model quality assessments using Rosetta energy terms. Predictor combines training features from ProQRosCen, ProQRosFA and ProQ2. | model quality assessments, model quality prediction | Swedish eScience Research Center ; Swedish Research Council |
DOI:10.1038/srep33509 | Free, Freely available | SCR_021880 | SciCrunch Registry | Proq3 | 2026-10-31 12:18:18 | 11 | ||||||||
|
Narishige: MF 830 Microgrinder Resource Report Resource Website 1+ mentions |
Narishige: MF 830 Microgrinder (RRID:SCR_022055) | instrument resource | Powerful microscope mounted to produce microelectrodes for patch clamping. | microscope, patch clamping, microelectrode, produce microelectrode, microforge, polish microelectrode tips, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_022055 | SciCrunch Registry | Narishige MF-830 Microgrinder | 2026-10-31 12:18:17 | 1 | |||||||||
|
Colorado School of Mines; Golden; Colorado Resource Report Resource Website 1+ mentions |
Colorado School of Mines; Golden; Colorado (RRID:SCR_022054) | data or information resource, portal, topical portal | Public research university in Golden, Colorado, founded in 1874. School offers both undergraduate and graduate degrees in engineering, science, and mathematics, with focus on energy and environment. |
is parent organization of: Colorado School of Mines Shared Instrumentation Facility X-ray Diffraction and Computed Tomography Core Facility is parent organization of: Colorado School of Mines Shared Instrumentation Facility Liquid Chromotography Mass Spectrometry Core Facility is parent organization of: Colorado School of Mines Shared Instrumentation Facility Mechanical Testing Core Facility is parent organization of: Colorado School of Mines Shared Instrumentation Facility Rocky Mountain Environmental X-Ray Photoelectron Spectroscopy Core Facility is parent organization of: Colorado School of Mines Shared Instrumentation Facility Time of Flight Secondary Ion Mass Spectrometry Core Facility is parent organization of: Colorado School of Mines Shared Instrumentation Facility Electron and Scanning Probe Microscopy Core Facility is parent organization of: Colorado School of Mines Shared Instrumentation Facility Surface Characterization and Thin Film Deposition Core Facility |
SCR_022054 | SciCrunch Registry | 2026-10-31 12:18:26 | 1 | ||||||||||||
|
ProSA web Resource Report Resource Website 100+ mentions |
ProSA web (RRID:SCR_021879) | data access protocol, software resource, web service | Interactive web service for recognition of errors in three dimensional structures of proteins. | structure errors recognition, proteins three dimensional structures, protein structure errors | FWF Austria ; University of Salzburg Austria |
PMID:17517781 | Free, Freely available | SCR_021879 | SciCrunch Registry | ProSA-web | 2026-10-31 12:18:22 | 474 | ||||||||
|
GeoMapApp Resource Report Resource Website 50+ mentions |
GeoMapApp (RRID:SCR_021919) | software resource, web application | Web tool as map based application for browsing, visualizing and analyzing diverse suite of curated global and regional geoscience data sets. These cover geophysics, geology, geochemistry, physical oceanography, climatology, and more. Runs with Java under Windows, Mac OS X, Linux and Unix/Solaris operating systems. | Marine Geoscience Data System, Lamont-Doherty Earth Observatory, geoscience data sets, browsing curated geoscience data, visualizing curated geoscience data, analyzing curated geoscience data |
is related to: Marine Geoscience Data System has parent organization: Columbia University; New York; USA |
Free, Available for download, Freely available | SCR_021919 | SciCrunch Registry | 2026-10-31 12:18:18 | 65 | ||||||||||
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HOBOware Pro Resource Report Resource Website 1+ mentions |
HOBOware Pro (RRID:SCR_021915) | software resource | Weather data logging software used for all HOBO data loggers and wireless data nodes. Used to read out and plot data, and export to spreadsheets for further analysis. | Data logging software, HOBO data loggers, wireless data nodes, Onset, HOBO | Restricted | SCR_021915 | SciCrunch Registry | Data loger HOBO | 2026-10-31 12:18:16 | 1 | ||||||||||
|
Resonance Technology: VisuaStimDigital Resource Report Resource Website |
Resonance Technology: VisuaStimDigital (RRID:SCR_021892) | instrument resource | Audio visual stimulation system for functional MRI (fMRI) applications. | Audio visual stimulation system, functional MRI, fMRI, Resonance Technology Inc. | Restricted | SCR_021892 | SciCrunch Registry | 2026-10-31 12:18:22 | 0 | |||||||||||
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Izon Control Suite Resource Report Resource Website 1+ mentions |
Izon Control Suite (RRID:SCR_021922) | software resource | Data acquisition software. Allows raw or filtered measurement data to be viewed in real time. Part of qNano system. Izon Control Suite Software V3.4 is maintenance software release that updates Izon current software. | Izon Science Ltd, data acquisition, nanotechnology | is related to: Izon: qNano Gold | Free, Available for download, Freely available | https://support.izon.com/how-can-i-get-the-latest-software-release | SCR_021922 | SciCrunch Registry | qNano Control Suite Software, Izon Control Suite Software V3.4, Izon Control Suite Software, Izon qNano Control Suite Software | 2026-10-31 12:18:22 | 3 | ||||||||
|
University of Puerto Rico Caribbean Primate Research Center Resource Report Resource Website 50+ mentions |
University of Puerto Rico Caribbean Primate Research Center (RRID:SCR_021920) | CPRC | biomaterial supply resource, material resource, organism supplier | Facilitates supply of conventional and specific pathogen free nonhuman primates and biological samples. Priority is given to NIH-funded investigators in universities, NIH Intramural Program, and contractors working on behalf of researchers conducting experiments under NIH-funded programs. Non-NIH-funded investigators may still be considered depending on resource availability.To request for CPRC animals, authorized representative of institution will need to submit Animal Allocation Request form. | CPRC Resource Distribution, rhesus macaques, nonhuman primates supply, biological samples supply, resource distribution, Conventional and Specific Pathogen Free nonhuman primates | has parent organization: University of Puerto Rico; Puerto Rico; USA | Restricted | SCR_021920 | SciCrunch Registry | University of Puerto Rico Caribbean Primate Research Center Resource Distribution Core | 2026-10-31 12:18:25 | 76 | ||||||||
|
Bio-Rad: T100 Thermal Cycler Resource Report Resource Website 1+ mentions |
Bio-Rad: T100 Thermal Cycler (RRID:SCR_021921) | instrument resource | Small compact 96well thermal cycler. PCR system features intuitive touch screen and thermal gradient technology to optimize reaction in single run. | BioRad, 96well thermal cycler, thermal cycler, PCR system, RT PCR, touch screen, thermal gradient technology, instrument, equipment, USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021921.pdf | Model_Number_T100_Thermal_Cycler | SCR_021921 | SciCrunch Registry | T100 Thermal Cycler | 2026-10-31 12:18:17 | 7 | |||||||||
|
MFDp2 Resource Report Resource Website 1+ mentions |
MFDp2 (RRID:SCR_021885) | data access protocol, software resource, web service | Web tool for accurate prediction of disorder in proteins by fusion of disorder probabilities, content and profiles. | protein disorder, accurate prediction, disorder in proteins, disorder prediction, disorder probabilities | Natural Sciences and Engineering Research Council of Canada ; University of Alberta |
PMID:28516009 | Free, Freely available | SCR_021885 | SciCrunch Registry | Multilayered Fusion based Disorder predictor v. 2.00 | 2026-10-31 12:18:18 | 4 | ||||||||
|
PrDOS Resource Report Resource Website 10+ mentions |
PrDOS (RRID:SCR_021886) | data access protocol, software resource, web service | Web server to predict natively disordered regions of protein chain from its amino acid sequence. Returns disorder probability of each residue as prediction results. | predict natively disordered regions, protein chain, protein chain prediction, disordered regions, disorder probability | SCR_021886 | SciCrunch Registry | 2026-10-31 12:18:25 | 39 | ||||||||||||
|
3DRefine Resource Report Resource Website 10+ mentions |
3DRefine (RRID:SCR_021883) | data access protocol, software resource, web service | Interactive web server for efficient protein structure refinement with capability to perform web based statistical and visual analysis. | efficient protein structure refinement, statistical and visual analysis | NIGMS R01 GM093123 | DOI:10.1093/nar/gkw336 | Free, Freely available | SCR_021883 | SciCrunch Registry | 2026-10-31 12:18:22 | 32 | |||||||||
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JSpeciesWS Resource Report Resource Website 10+ mentions |
JSpeciesWS (RRID:SCR_022059) | data access protocol, software resource, web service | Web server for prokaryotic species circumscription based on pairwise genome comparison. Service for in silico calculating extent of identity between two genomes, parameter routinely used in process of polyphasic microbial species circumscription. Service measures average nucleotide identity. | prokaryotic species circumscription, pairwise genome comparison, average nucleotide identity measurement | European Community Seventh Framework Programme | PMID:26576653 | Free, Freely available | SCR_022059 | SciCrunch Registry | JSpecies Web Server | 2026-10-31 12:18:18 | 33 | ||||||||
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HaploMaker Resource Report Resource Website 1+ mentions |
HaploMaker (RRID:SCR_021928) | software resource | Software pipeline for haplotype assembly of diploid genomes using paired end or PacBio reads. | haplotype assembly, diploid genomes, paired end reads, PacBio reads | Free, Available for download, Freely available | SCR_021928 | SciCrunch Registry | 2026-10-31 12:18:25 | 1 |
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