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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Zeiss LabScope Resource Report Resource Website 1+ mentions |
Zeiss LabScope (RRID:SCR_021768) | data acquisition software, data processing software, image acquisition software, software application, software resource | Software tool for image acquisition using WiFi-enabled Zeiss microscopes. Compatible with Windows PCs and with Apple tablets., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Image acquisition, acquisition using WiFi enabled Zeiss microscopes, Zeiss | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_021768 | SciCrunch Registry | Zeiss LabScope software | 2026-10-31 12:18:24 | 4 | ||||||||||
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Atherosclerosis Risk in Communities Resource Report Resource Website 10+ mentions |
Atherosclerosis Risk in Communities (RRID:SCR_021769) | ARIC | data or information resource, disease-related portal, portal, topical portal | Platform for prospective epidemiologic study conducted in four U.S. communities. One of most significant and longest running heart health studies and is the largest study of heart health in African Americans. ARIC investigates risk factors for heart disease and stroke, and connections between cardiovascular and cognitive health. ARIC includes two parts: Cohort Component and Community Surveillance Component. Cohort Component began in 1987, and each ARIC field center randomly selected and recruited cohort sample of individuals aged 45-64 from defined population in their community, to receive extensive examinations, including medical, social, and demographic data. In Community Surveillance Component, four communities are investigated to determine long term trends in hospitalized myocardial infarction and coronary heart disease deaths in men and women aged 35-84 years. | Heart health studies, epidemiologic study, heart disease risk factors, stroke risk factors, cardiovascular and cognitive health connection, atherosclerosis risk | coronary heart disease, stroke, myocardial infarction, atherosclerosis | NHLBI | PMID:2646917 PMID:34112321 |
Free, Freely available | SCR_021769 | SciCrunch Registry | The Atherosclerosis Risk in Communities (ARIC) Study | 2026-10-31 12:18:15 | 43 | ||||||
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Papers with Code Resource Report Resource Website 10+ mentions |
Papers with Code (RRID:SCR_021800) | data or information resource, portal, topical portal | Website devoted to papers that contain machine learning datasets, code, methods and evaluation tables. Done together with community, supported by NLP and ML.All content on this website is openly licenced under CC-BY-SA and everyone can contribute.Also operates specialized portals for papers with code in astronomy, physics, computer sciences, mathematics and statistics. | article, machine learning datasets, code, methods, evaluation tables | Free, Freely available | SCR_021800 | SciCrunch Registry | 2026-10-31 12:18:25 | 20 | |||||||||||
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IonWizard Resource Report Resource Website 1+ mentions |
IonWizard (RRID:SCR_021764) | data acquisition software, data processing software, software application, software resource | Software tool to perform rapid fluorescence and morphometric real time, synchronous data acquisition with IonOptix systems, as well as polynomial fitting and analysis for myocyte research. Features include data trace averaging and filtering,composite images, and transient analysis. Integrates presentation of fluorescence traces and images, analog voltages, and cell length data under intuitive interface. Analyzes raw data by performing ratio, ion, or linear calibration calculations. | IONOPTIX LLC, polynomial fitting, analysis for myocyte research, data trace averaging and filtering, fluorescence, morphometry | Restricted | SCR_021764 | SciCrunch Registry | IonOptix IonWizard | 2026-10-31 12:18:20 | 8 | ||||||||||
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FigsharePlus Resource Report Resource Website 1+ mentions |
FigsharePlus (RRID:SCR_021762) | data or information resource, data repository, service resource, storage service resource | Web based interface designed for academic research data management and research data dissemination. Accepts all file types. Enables academics to upload, share, cite and discover all manner of research outputs with security of knowing our hosting options and platform support long term preservation of data.Used to share big datasets from 100GB up. Added features and expert guidance are also included for sharing your data FAIR-ly.During data deposit, personal email support is available and once submitted, Figshare data expert will conduct review of the metadata and spot check of your dataset files and offer guidance, with main aim of enhancing discoverability and reusability. | FAIR data |
is related to: FigShare is related to: NIH Figshare Archive |
https://plus.figshare.com/, https://github.com/figshare/user_documentation | SCR_021762 | SciCrunch Registry | 2026-10-31 12:18:15 | 1 | ||||||||||
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TriKinetics DAMSystem3 Software Resource Report Resource Website 1+ mentions |
TriKinetics DAMSystem3 Software (RRID:SCR_021809) | data acquisition software, data processing software, software application, software resource | Software tool for data collection to upload output from set of activity monitors and periodically saves it in disk files on Macintosh or Windows PC. Part of TriKinetics Drosophila Activity Monitoring System. | TriKinetics Inc USA, data collection | is related to: TriKinetics: Drosophila Activity Monitoring System | Free, Freely available, Available for download | https://www.trikinetics.com/Downloads/QuickStart%20Guide.pdf | SCR_021809 | SciCrunch Registry | 2026-10-31 12:18:16 | 4 | |||||||||
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Mouse Developmental Anatomy Ontology Browser Resource Report Resource Website 1+ mentions |
Mouse Developmental Anatomy Ontology Browser (RRID:SCR_021808) | EMAPA | data access protocol, software resource, web service | Browser for mouse developmental anatomy. Ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of Edinburgh Mouse Atlas Project (EMAP) in order to provide structured controlled vocabulary of stage specific anatomical structures for developing laboratory mouse. | mouse developmental anatomy, mouse developmental ontology, mouse developmental anatomy ontology, structured controlled vocabulary, stage specific anatomical structures, developing laboratory mouse | Free, Freely available | http://www.obofoundry.org/ontology/emapa.html | SCR_021808 | SciCrunch Registry | Mouse Developmental Anatomy Ontology, Mouse Developmental Anatomy Browser | 2026-10-31 12:18:20 | 1 | ||||||||
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PARASAIL Resource Report Resource Website 1+ mentions |
PARASAIL (RRID:SCR_021805) | alignment software, data processing software, image analysis software, software application, software resource | Software tool as multiple sequence alignement for global, local and semi global alignments. | multiple sequence alignement, global alignments, local alignments, semi global alignments, | is listed by: Debian | Pacific Northwest National Laboratory | DOI:10.1186/s12859-016-0930-z | Free, Available for download, Freely available | https://sources.debian.org/src/libparasail-dev/ | SCR_021805 | SciCrunch Registry | Pairwise Sequence Alignment Library | 2026-10-31 12:18:25 | 4 | ||||||
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LEON BIS Resource Report Resource Website 1+ mentions |
LEON BIS (RRID:SCR_021803) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software tool for sequence alignments evaluation. Multiple alignment evaluation of sequence neighbours using Bayesian inference system. Used to distinguish sections in multiple sequence alignments that are conserved across whole family or within subfamilies, and should be useful for automatic, high-throughput genome annotations, 2D/3D structure predictions, protein-protein interaction predictions etc. | sequence alignments evaluation, distinguish sections, multiple sequence alignments, genome annotations, 2D/3D structure predictions, protein-protein interaction predictions | PMID:27387560 | Free, Available for download, Freely available | SCR_021803 | SciCrunch Registry | LEON-BIS | 2026-10-31 12:18:20 | 1 | |||||||||
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TrainingSpace Resource Report Resource Website 1+ mentions |
TrainingSpace (RRID:SCR_022036) | data or information resource, online course, portal, training resource | Portal that provides multimedia educational content from courses, conference lectures, and laboratory exercises from some of leading neuroscience institutes and societies to be more accessible to global neuroscience community. | Training materials resource, neuroscience multimedia educational content, neuroscience community | Free, Freely available | SCR_022036 | SciCrunch Registry | 2026-10-31 12:18:24 | 1 | |||||||||||
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CellScale: MicroTester G2 system Resource Report Resource Website 1+ mentions |
CellScale: MicroTester G2 system (RRID:SCR_022034) | instrument resource | System includes MicroTester G2 device and software. MicroTester G2 is mechanical test device that can be used to test properties of variety of tissues and materials. Main components of device are load application microbeam, actuators, imaging system, and fluid bath/test chamber. MicroTester G2 software is divided into two modules: data collection module and review and analysis module. | instrument, equipment, USEDit, CellScale, mechanical test device, test properties, tissues, materials | is listed by: USEDit | Restricted | https://www.cellscale.com/downloads2/MicroTester%20User%20ManualG2.pdf | SCR_022034 | SciCrunch Registry | SquisherJoy | 2026-10-31 12:18:17 | 3 | ||||||||
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Shahid Sadoughi University of Medical Sciences; Yazd; Iran Resource Report Resource Website 1+ mentions |
Shahid Sadoughi University of Medical Sciences; Yazd; Iran (RRID:SCR_022031) | university | Public university located in center of Iran in World Heritage city of Yazd. | SCR_022031 | SciCrunch Registry | Shahid Sadoughi University of Medical Sciences | 2026-10-31 12:18:20 | 2 | ||||||||||||
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LogiXPro Resource Report Resource Website |
LogiXPro (RRID:SCR_021978) | software resource | Software tool for learning fundamentals of RSLogix ladder logic programming. | RSLogix ladder logic programming learning | Restricted | https://canadu.com/lp/dwnloads.asp | SCR_021978 | SciCrunch Registry | Resource | 2026-10-31 12:18:19 | 0 | |||||||||
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PlaForNEA Resource Report Resource Website |
PlaForNEA (RRID:SCR_022027) | simulation software, software application, software resource | Software allows estimating growth and production at stand level of main forest species implanted in Argentine Mesopotamia such as Pino taeda, Eucalyptus grandis, Pino elliottii and Araucaria angustifolia. Areas for which models were adjusted correspond to province of Misiones, northeast of Corrientes and Concordia in province of Entre Ríos. | estimating growth and production, forest species, Argentine Mesopotamia | Free, Available for download, Freely available | https://plafornea.software.informer.com/ | SCR_022027 | SciCrunch Registry | PLAFORNEA | 2026-10-31 12:18:17 | 0 | |||||||||
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CoolLED: pE-300ultra Resource Report Resource Website 1+ mentions |
CoolLED: pE-300ultra (RRID:SCR_021972) | instrument resource | Highly controllable fluorescence microscopy Illumination System which offers broad spectrum LED illumination for imaging most common fluorophores. System offers precise control over wavelength irradiance and shuttering. Used for LED microscope lighting. | CoolLED, LED microscope lighting, LED illumination, imaging, fluorophores, control over wavelength irradiance and shuttering, instrument, equipment, USEDit | is listed by: USEDit | Restricted | , Model_Number_pE-300ultra | SCR_021972 | SciCrunch Registry | 2026-10-31 12:18:23 | 3 | |||||||||
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SimulaBeta Resource Report Resource Website 1+ mentions |
SimulaBeta (RRID:SCR_021900) | simulation software, software application, software resource | Software tool as simulation program for insulin glucose feedback control. Based on nonlinear MiMe-NoCoDI model. | Open source, insulin, glucose, simulation, modelling, model, beta cell, homeostasis |
uses: CyberUnits is related to: SPINA Carb is related to: SimThyr has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany has parent organization: Ulm University; Baden-Wurttemberg; Germany |
Deutsche Forschungsgemeinschaft (DFG) GRK 1041; Ministry of Education (MOE) Singapore ; Open Access Publication Funds of the Ruhr-Universität Bochum ; Germany |
PMID:36271244 | Free, Available for download, Freely available | DOI:10.5281/zenodo.4922800 | https://doi.org/10.5281/zenodo.4922800 | SCR_021900 | SciCrunch Registry | 2026-10-31 12:18:16 | 2 | ||||||
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MDAR Resource Report Resource Website |
MDAR (RRID:SCR_022038) | data or information resource, portal, topical portal | MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals. | methods, Materials Design Analysis Reporting, requirements in transparent reporting, manuscript, journal, harmonizing principle for reporting | PMID:33893240 | Free, Freely available | https://www.incf.org/mdar, https://mfr.osf.io/render?url=https://osf.io/xfpn4/?direct%26mode=render%26action=download%26mode=render | SCR_022038 | SciCrunch Registry | Materials Design Analysis Reporting | 2026-10-31 12:18:26 | 0 | ||||||||
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germline flow Resource Report Resource Website |
germline flow (RRID:SCR_021906) | software resource | High performance of GPU accelerated variant calling tool in genome data analysis. | variant calling, acceleration tool, GPU-based acceleration, GATK pipeline | Free, Freely available | SCR_021907 | SCR_021906 | SciCrunch Registry | germline_flow | 2026-10-31 12:18:16 | 0 | |||||||||
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Motif Mutation Analysis for Regulatory Genomic Elements Resource Report Resource Website 500+ mentions |
Motif Mutation Analysis for Regulatory Genomic Elements (RRID:SCR_021902) | MMARGE | data analysis software, data processing software, software application, software resource, software toolkit | Software package that integrates genome wide genetic variation with epigenetic data to identify collaborative transcription factor pairs. Optimized to work with chromatin accessibility assays such as ATAC-seq or DNase I hypersensitivity, as well as transcription factor binding data collected by ChIP-seq. Used to identify combinations of cell type specific transcription factors while simultaneously interpreting functional effects of non-coding genetic variation. | genome wide genetic variation, epigenetic data, identify collaborative transcription factor pairs, interpreting functional effects, non-coding genetic variation | NCI CA173903; NHLBI R00 123485; NIDDK DK091183; NIGMS GM085764 |
PMID:29893919 | Free, Available for download, Freely available | SCR_021902 | SciCrunch Registry | 2026-10-31 12:18:18 | 608 | ||||||||
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CancerMIRNome Resource Report Resource Website 10+ mentions |
CancerMIRNome (RRID:SCR_022092) | data access protocol, data or information resource, database, software resource, web service | Web server for cancer miRNome interactive analysis and visualization based on human miRNome data of cancer types from The Cancer Genome Atlas, and public cancer circulating miRNome profiling datasets from NCBI Gene Expression Omnibus and ArrayExpress. Comprehensive database for interactive analysis and visualization of miRNA expression profiles. | cancer miRNome interactive analysis, human miRNome data, cancer data, miRNA expression profiles |
is related to: The Cancer Genome Atlas is related to: ArrayExpress |
National Natural Science Foundation of China ; Riverside Faculty Start-up Fund ; Science and Technology Project of Guizhou Province ; UC Academic Senate CoR Research Grant ; UC Cancer Research Coordinating Committee Competition Award ; United States Department of Agriculture |
DOI:10.1093/nar/gkab784 | Free, Freely available | SCR_022092 | SciCrunch Registry | 2026-10-31 12:18:20 | 48 |
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