Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MediBeacon Studio Software Resource Report Resource Website |
MediBeacon Studio Software (RRID:SCR_016252) | data analysis software, data processing software, software application, software resource | Software used to analyze glomerular filtration rate (GFR) measurement from MediBeacon GFR monitor. It is used with the Transdermal Continuous Renal Function Monitor. | nephrology, renal, kidney, gfr, glomerulus, transdermal, skin, measurement | has parent organization: MediBeacon | Commercially available, Comes with device purchase | SCR_016252 | SciCrunch Registry | Studio Software, MediBeacon Software, Preclinical Data Studio | 2026-09-26 02:15:44 | 0 | |||||||||
|
Xenopus Express Resource Report Resource Website 1+ mentions |
Xenopus Express (RRID:SCR_016373) | XEP | biomaterial supply resource, material resource, organism supplier | Supplier of Frogs and Tadpoles for the scientific community. | RIN, Resource Information Network, xenopus, frog, tadpole, amphibian, supply, organism, diet, animal food, RRID Community Authority | is listed by: Resource Information Network | SCR_016373 | SciCrunch Registry | Xenopus Xpress | 2026-09-26 02:15:45 | 4 | |||||||||
|
SciScore Resource Report Resource Website 10+ mentions |
SciScore (RRID:SCR_016251) | software application, software resource, text-mining software, web application | Text-mining software that reviews methods sections of scientific articles. It provides a numerical score to represent the "reproducibility" of the article's research. | mine, text, method, journal, paper, article, research, science, biomedicine, neuroscience, scicrunch, nif, ASWG | is related to: SciCrunch | PMID:35759334 PMID:33196023 |
Used by SciCrunch, Freely available, Available to the research community | http://sci-score.com | SCR_016251 | SciCrunch Registry | Sci Score, SciCrunch SciScore | 2026-09-26 02:15:44 | 13 | |||||||
|
GraPhlAn Resource Report Resource Website 100+ mentions |
GraPhlAn (RRID:SCR_016130) | data processing software, data visualization software, software application, software resource | Software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. Used for concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation as a high-resolution microbial tree of life with taxonomic annotations., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | circular, high, resolution, microbal, tree, taxonomy, annotation, phylogenetic, investigation |
is listed by: Debian is listed by: OMICtools has parent organization: Harvard University; Cambridge; United States |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_11549 | https://huttenhower.sph.harvard.edu/graphlan, https://sources.debian.org/src/graphlan/ | SCR_016130 | SciCrunch Registry | Graphlan | 2026-09-26 02:15:42 | 186 | |||||||
|
CycIF.org Resource Report Resource Website 10+ mentions |
CycIF.org (RRID:SCR_016267) | CycIF.org | data or information resource, experimental protocol, immuno detection protocol, immunofluorescence, narrative resource, web page | Web page for cyclic immunofluorescence. It lists several downloadable data and software pertaining to cyclic immunofluorescence. | immunofluorescence, cyclic, cycif, data, software, single cell, numeric, dataset, intratumoural, heterogeneity | has parent organization: LINCS Data Portal | NHLBI U54 HL127365 | PMID:26399630 | Public | SCR_016267 | SciCrunch Registry | cycif.org | 2026-09-26 02:15:44 | 16 | ||||||
|
BioPlex Resource Report Resource Website 1000+ mentions |
BioPlex (RRID:SCR_016144) | data or information resource, data repository, database, service resource, storage service resource | Database of cell lines with each expressing a tagged version of a protein from the ORFeome collection. The overarching project goal is to determine protein interactions for every member of the collection. | cell, line, protein, immunopurification, mass, spectrometry, interaction, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: Harvard Medical School; Massachusetts; USA |
Canadian Institutes for Health Research ; NHGRI U41HG006673; NIDDK K01 DK098285 |
PMID:28514442 | biotools:bioplex_2.0 | https://bio.tools/bioplex_2.0 | SCR_016144 | SciCrunch Registry | BioPlex (biophysical interactions of ORFeome-based complexes), Harvard BioPlex, Biophysical Interactions of Orfeome-based comPLEXes (BioPLEX) | 2026-09-26 02:15:42 | 1378 | ||||||
|
Virtual Digital Brain Resource Report Resource Website |
Virtual Digital Brain (RRID:SCR_016265) | VDB | software resource | Virtual resource for neuroscience. | brain, neuroscience, neuroimaging, cerebral | Free for academic use | SCR_016265 | SciCrunch Registry | 2026-09-26 02:15:44 | 0 | ||||||||||
|
mentha Resource Report Resource Website 100+ mentions |
mentha (RRID:SCR_016148) | data analysis software, data or information resource, data processing software, database, software application, software resource, web application | Software that archives evidence collected from different sources, then analyzes and presents these data. Its data come from manually curated protein-protein interaction databases that have adhered to the IMEx consortium. | protein, ppi, imex, interactome, archival, bio.tools, FASEB list |
uses: PSICQUIC Registry is listed by: Debian is listed by: bio.tools is related to: IMEx - The International Molecular Exchange Consortium |
PMID:23900247 | biotools:mentha, r3d100011124 | https://bio.tools/mentha, https://doi.org/10.17616/R3SP8V | SCR_016148 | SciCrunch Registry | 2026-09-26 02:15:42 | 156 | ||||||||
|
Center for Expanded Data Annotation and Retrieval Resource Report Resource Website 1+ mentions |
Center for Expanded Data Annotation and Retrieval (RRID:SCR_016269) | CEDAR | controlled vocabulary, data or information resource, ontology, organization portal, portal | Develops information technologies that make authoring complete metadata more manageable. Its products aim to facilitate using the metadata in further research.Center to improve metadata and its use throughout biomedical sciences. Develops information technologies that make authoring complete metadata more manageable through better interfaces, terminology, metadata practices, and analytics. Optimizes metadata pathway from provider to end user. Provides way for funders to specify what metadata they want to collect as part of research life cycle. | Metadata, interface, metadata practice, analytics, metadata pathway, funded research, data repository, data collection, |
is related to: Stanford University; Stanford; California is related to: Yale University; Connecticut; USA is related to: University of Oxford; Oxford; United Kingdom has parent organization: Stanford Center for Biomedical Informatics Research is parent organization of: CEDAR Workbench |
NIAID U54 AI117925 | SCR_018150 | https://more.metadatacenter.org/ | SCR_016269 | SciCrunch Registry | 2026-09-26 02:15:44 | 4 | |||||||
|
easyGV Resource Report Resource Website 1+ mentions |
easyGV (RRID:SCR_016260) | data analysis software, data processing software, software application, software resource | Software for calculating different measures of glycaemic variability (GV). It analyzes continuous glucose monitoring data using a simple interface. | glycaemic, glycemia, variability, gv, glucose, diabetes, excel |
has parent organization: University of Oxford; Oxford; United Kingdom is a plug in for: Microsoft Excel |
PMID:21714681 | Free for academic use, Free for non-commercial use, Available for download | SCR_016260 | SciCrunch Registry | 2026-09-26 02:15:44 | 5 | |||||||||
|
Illumina: MiSeqDx System Resource Report Resource Website 1+ mentions |
Illumina: MiSeqDx System (RRID:SCR_016380) | instrument resource | MiSeqDx System is FDA-regulated, CE-IVD-marked, NGS platform for in vitro diagnostic (IVD) testing. System offers both diagnostic and research modes. | Illumina, Sequencing System, Instrument Equipment, USEDit, | Restricted | SCR_020137, Model_Number_MiSeqDx | SCR_016380 | SciCrunch Registry | MiSeqDx | 2026-09-26 02:15:46 | 2 | |||||||||
|
Illumina: HiSeq X Resource Report Resource Website 50+ mentions |
Illumina: HiSeq X (RRID:SCR_016385) | instrument resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 15,2023. Sequencer for whole-genome sequencing. System consists of HiSeq X ultra-high-throughput instruments that deliver over 18,000 human genomes per year. | Illumina, Sequencing System, Instrument Equipment, USEDit, | THIS RESOURCE IS NO LONGER IN SERVICE | Model_Number_HiSeq X, SCR_020131 | https://www.illumina.com/content/dam/illumina-marketing/documents/products/datasheets/datasheet-hiseq-x-ten.pdf | SCR_016385 | SciCrunch Registry | HiSeq X | 2026-09-26 02:15:46 | 62 | ||||||||
|
Illumina: HiSeq 2500 System Resource Report Resource Website 50+ mentions |
Illumina: HiSeq 2500 System (RRID:SCR_016383) | instrument resource | High-throughput sequencing system. High-quality data using proven Illumina SBS chemistry has made it the instrument of choice for major genome centers and research institutions throughout the world.HiSeq 2500 System has been discontinued. Illumina will support the instrument and intends to supply the reagents through February 28, 2023. | Illumina, Sequencing System, Instrument Equipment, USEDit, | works with: PySeq2500 | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_016383.pdf | SCR_020123, Model_Number_HiSeq 2500 | https://support.illumina.com/content/dam/illumina-support/documents/documentation/system_documentation/hiseq2500/hiseq-2500-system-guide-15035786-03.pdf, https://support.illumina.com/content/dam/illumina-support/documents/documentation/system_documentation/hiseq2500/hiseq-2500-system-guide-15035786-03.pdf | https://www.illumina.com/systems/sequencing-platforms/hiseq-2500.html | SCR_016383 | SciCrunch Registry | HiSeq 2500 | 2026-09-26 02:15:46 | 88 | ||||||
|
HIRN Consortium on Human Islet Biomimetics Resource Report Resource Website |
HIRN Consortium on Human Islet Biomimetics (RRID:SCR_016199) | HIRN-CHIB, CHIB | consortium, data or information resource, organization portal, portal | Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is combining advances in beta cell biology and cell biology with tissue engineering technologies to develop microdevices that support functional human islets. | beta, cell, biology, tissue, bioengineering, nanoengineering, human, stem | is organization facet of: Human Islet Research Network (HIRN) | NIDDK ; NIDDK U01 DK104162; NIDDK UC4 DK104165; NIDDK UC4 DK104196; NIDDK UC4 DK104202; NIDDK UC4 DK104208; NIDDK UC4 DK116283 |
SCR_016199 | SciCrunch Registry | Consortium on Human Islet Biomimetics (HIRN-CHIB) | 2026-09-26 02:15:43 | 0 | ||||||||
|
LR Gapcloser Resource Report Resource Website 50+ mentions |
LR Gapcloser (RRID:SCR_016194) | alignment software, data processing software, image analysis software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18th, 2023. Software that uses long reads to close gaps in the assemblies. | long, short, read, alignment, assembly, gap, closer, sequence, gene | PMID:30576505 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_017021 | SCR_016194 | SciCrunch Registry | LR_Gapcloser | 2026-09-26 02:15:43 | 71 | ||||||||
|
Grass Stimulator Model S88 Resource Report Resource Website 1+ mentions |
Grass Stimulator Model S88 (RRID:SCR_016192) | resource | Hardware that is a electrical pulse generator. | hardware, instrument, equipment, electricity, pulse, stimulation, generator | Commercially available | SCR_016192 | SciCrunch Registry | Cyberonics VNS 103, S88 DUAL OUTPUT SQUARE PULSE, Pulse Stimulator, Grass Technologies Stimulator Pulse | 2026-09-26 02:15:43 | 4 | ||||||||||
|
HIRN Consortium on Beta Cell Death and Survival Resource Report Resource Website |
HIRN Consortium on Beta Cell Death and Survival (RRID:SCR_016198) | HIRN-CBDS, CBDS | consortium, data or information resource, organization portal, portal | Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is using human tissues to discover highly specific biomarkers of beta cell injury in asymptomatic T1D and developing strategies to stop beta cell destruction early in the disease process. | kidney, tissue, biomarker, beta, cell, t1d, disease, research | is organization facet of: Human Islet Research Network (HIRN) | NIDDK ; NIDDK U01 DK104162; NIDDK UC4 DK104155; NIDDK UC4 DK104159; NIDDK UC4 DK104166; NIDDK UC4 DK104167; NIDDK UC4 DK104205; NIDDK UC4 DK104216; NIDDK UC4 DK108101; NIDDK UC4 DK108120; NIDDK UC4 DK108132; NIDDK UC4 DK116271; NIDDK UC4 DK116274; NIDDK UC4 DK116278 |
SCR_016198 | SciCrunch Registry | Consortium on Beta Cell Death and Survival (HIRN-CBDS) | 2026-09-26 02:15:43 | 0 | ||||||||
|
NIX Resource Report Resource Website 10+ mentions |
NIX (RRID:SCR_016196) | data processing software, data storage software, software application, software resource | Software that defines a data model for annotated scientific datasets. It includes data together with metadata, and a corresponding file format based on HDF5 for storing and sharing such datasets. | data, model, metadata, scientific, integration, file, format, annotation, hdf5, dataset |
uses: Open metadata mark up language is used by: EEGbase has parent organization: German Neuroinformatics Node (G-Node) has parent organization: Ludwig-Maximilians-University; Munich; Germany |
BMBF 01GQ0801; BMBF 01GQ1302 |
DOI:10.3389/conf.fninf.2014.18.00027 | Public | https://fairsharing.org/bsg-s001169 | http://www.g-node.org/nix | SCR_016196 | SciCrunch Registry | Pandora, NIX Project | 2026-09-26 02:15:43 | 13 | |||||
|
XLSTAT Resource Report Resource Website 100+ mentions |
XLSTAT (RRID:SCR_016299) | XLSTAT | data analysis software, data management software, data processing software, data visualization software, software application, software resource | Software for commercial data analysis and statistical software package for Microsoft Excel. | data, process, manage, analyze, visualize, graph, statistic, microsoft, excel | is related to: Microsoft Excel | Addinsoft | Commercially available, Trial available | SCR_016299 | SciCrunch Registry | XL STATistics | 2026-09-26 02:15:45 | 175 | |||||||
|
InterLex Resource Report Resource Website 1+ mentions |
InterLex (RRID:SCR_016178) | controlled vocabulary, data or information resource, narrative resource, ontology, wiki | The InterLex project - a core component of SciCrunch and supported by projects such as the Neuroscience Information Framework project (NIF), the NIDDK Information Network (dkNET), and the Open Data Commons for Spinal Cord Injury - is a dynamic lexicon of biomedical terms. Unlike an encyclopedia, a lexicon provides the meaning of a term, and not all there is to know about it. InterLex is being constructed to help improve the way that biomedical scientists communicate about their data, so that information systems like NIF and dkNET can find data more easily and provide more powerful means of integrating that data across distributed resources. One of the big roadblocks to data integration in the biomedical sciences is the inconsistent use of terminology in databases and other resources such as the literature. When we use the same terms to mean different things, we cannot easily ask questions that span across multiple resources. For example, if three databases have information about what genes are expressed in cortex, but they all use different definitions of cerebral cortex, then it is hard to compare them. InterLex allows for the association of data values (i.e. the value of a field or text within a field) to terminologies enabling the crowdsourcing of data-terminology mappings. InterLex was built on the foundation of NeuroLex (see Larson and Martone 2013 Neurolex: An online framework for neuroscience knowledge. Frontiers in Neuroinformatics, 7:18) and contains all of the existing NeuroLex terms. The initial entries in NeuroLex were built from the NIFSTD ontologies. NIFSTD currently has about 60,000 concepts (includes both classes and synonyms) that span gross anatomy, cells, subcellular structures, diseases, functions and techniques. InterLex models terms using primitives of the Web Ontology Language (OWL) and can export directly to a variety of standard ontology formats. A primary goal of interlex is to provide a stable layer on top of the many other existing terminologies, lexicons, and ontologies (i.e. provide a way to federate ontologies for data applications) and to provide a set of inter-lexical and inter-data-lexical mappings. In the future, InterLex will support user specific namespaces so that users can customize the exact definitions or ontologies they source from, as well as the relationships on those terms. Importantly, however, InterLex enforces a simple rule which is that terms which represent the same concept under the same superclass will maintain the same identifier fragment (i.e. 'ilx_1234567'). However, each user will be able to 'fork' a term into their own namespace (e.g. http://uri.interlex.org/user/ilx_1234567). This enables the various perspectives on a term or concept to have equal space so that the full diversity of views on a term can be seen and expressed. Sign-up for updates to get notified about updates to InterLex and when new features are available. | terminology, lexicon, vocabulary |
is used by: SPARC Portal is related to: NeuroLex is related to: NIFSTD has parent organization: SciCrunch |
https://scicrunch.org/scicrunch/interlex/dashboard | SCR_016178 | SciCrunch Registry | 2026-09-26 02:15:43 | 6 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
