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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MutaRNA Resource Report Resource Website 1+ mentions |
MutaRNA (RRID:SCR_021723) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server predicts and visualizes mutation induced structure changes of single nucleotide polymorphism in RNA sequence. This covers changes in accessibility (single strandedness) of molecule, its intra molecular base pairing potential and its base pairing probabilities. One of Freiburg RNA tools. | Mutation induced structure changes, single nucleotide polymorphism, RNA sequence | has parent organization: University of Freiburg; Baden-Wurttemberg; Germany | Baden-Wuerttemberg Ministry of Science ; Research and Art ; German Research Foundation ; Germany Excellence Strategy ; University of Freiburg |
PMID:32392303 | Free, Freely available | SCR_021723 | SciCrunch Registry | Mutational Analysis of RNAs | 2026-10-31 12:18:15 | 2 | |||||||
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DiPer Resource Report Resource Website 1+ mentions |
DiPer (RRID:SCR_021720) | data analysis software, data processing software, software application, software resource | Software tool calculates direction autocorrelation, plots and calculates other essential parameters to analyze cell migration in two dimensions: it displays cell trajectories individually and collectively, and it calculates average speed and mean square displacements (MSDs) to assess the area explored by cells over time. | calculates direction autocorrelation, analyze cell migration, displays cell trajectories, calculates average speed and mean square displacements | SCR_021720 | SciCrunch Registry | 2026-10-31 12:18:24 | 3 | ||||||||||||
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NIH NCI list of FDA approved cancer drugs Resource Report Resource Website 10+ mentions |
NIH NCI list of FDA approved cancer drugs (RRID:SCR_021841) | data or information resource, disease-related portal, portal, topical portal | Portal to find consumer friendly information about drugs for cancer and conditions related to cancer. The list is in alphabetical order by generic name and brand name. | drugs for cancer, conditions related to cancer, alphabetical order, generic name, brand name | cancer | Free, Available for download, Freely available | SCR_021841 | SciCrunch Registry | 2026-10-31 12:18:17 | 16 | ||||||||||
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VAMPIRE Resource Report Resource Website 1+ mentions |
VAMPIRE (RRID:SCR_021721) | data analysis software, data processing software, image analysis software, software application, software resource | Software tool for analysis of cell and nuclear morphology from fluorescence or bright field images. Enables profiling and classification of cells into shape modes based on equidistant points along cell and nuclear contours. Robust method to quantify cell morphological heterogeneity. | cell morphology analysis, nuclear morphology analysis, fluorescence images, bright field images | NCI R01 CA174388; NCI U54 CA143868; NIA P30 AG021334; NIA U01 AG060903 |
DOI:10.1038/s41596-020-00432-x | Free, Available for download, Freely available | SCR_021721 | SciCrunch Registry | Visually Aided Morpho-Phenotyping Image Recognition | 2026-10-31 12:18:15 | 2 | ||||||||
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SARS-CoV-2 network analysis Resource Report Resource Website 1+ mentions |
SARS-CoV-2 network analysis (RRID:SCR_021811) | 1d time-series analysis software, data analysis software, data processing software, network analysis software, software application, software resource, time-series analysis software | Software tool to predict human proteins that interact with SARS-CoV-2 proteins and trace provenance of predictions. | network propagation; interpretable machine learning; provenance tracing; SARS-CoV-2; COVID-19; virus-host protein interaction networks | Free, Available for download, Freely available | SCR_021811 | SciCrunch Registry | SARS-CoV-2-network-analysis, SARS-CoV-2 Protein Interaction Network Analysis | 2026-10-31 12:18:16 | 1 | ||||||||||
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TractionsForAll Resource Report Resource Website 1+ mentions |
TractionsForAll (RRID:SCR_021819) | data analysis software, data processing software, software application, software resource | Software tool to calculate 2D tractions exerted by adherent cell on its substrate. Used in field of mechanobiology to study contractile responses of variety of cell types. | Traction force analysis, 2D tractions, adherent cell, mechanobiology, cell contractile responses | uses: MATLAB | Free, Freely available | SCR_021819 | SciCrunch Registry | 2026-10-31 12:18:25 | 2 | ||||||||||
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Trikinetics DAM FileScan Resource Report Resource Website 1+ mentions |
Trikinetics DAM FileScan (RRID:SCR_021817) | software resource | Software tool used in Drosophila Activity Monitor system to scann data for errors. Also allows user to extract data from monitor files and bin data in different lengths. | scann data for errors, Drosophila Activity Monitor system, extract data | is related to: TriKinetics: Drosophila Activity Monitoring System | SCR_021817 | SciCrunch Registry | DAM FileScan | 2026-10-31 12:18:16 | 1 | ||||||||||
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NHP pycortex Resource Report Resource Website 1+ mentions |
NHP pycortex (RRID:SCR_021815) | data processing software, data visualization software, software application, software resource | Software tool as adaptation for NHP brains and pipelines. Pycortex python based toolkit for surface visualization of fMRI data. | fMRI data, surface visualization | has parent organization: Royal Netherlands Academy of Arts and Sciences; Amsterdam; Netherlands | Free, Available for download, Freely available | SCR_021815 | SciCrunch Registry | NHP-pycortex | 2026-10-31 12:18:21 | 1 | |||||||||
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eQTL Catalogue Resource Report Resource Website 50+ mentions |
eQTL Catalogue (RRID:SCR_021700) | catalog, data or information resource, database | Catalog provides uniformly processed gene expression and splicing QTLs from all available public studies on human. Expression and splicing QTLs recomputed from public datasets. | Gene expression, splicing QTLs, public datasets, human data, public studies | is related to: Open Targets Genetics Portal | DOI:10.1101/2020.01.29.924266 | Free, Freely available | SCR_021700 | SciCrunch Registry | 2026-10-31 12:18:14 | 59 | |||||||||
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SqueezeMeta Resource Report Resource Website 10+ mentions |
SqueezeMeta (RRID:SCR_021821) | data analysis software, data processing software, software application, software resource | Software tool as fully automated pipeline for metagenomic analysis. Used for metagenomics covering all steps of analysis. Features several characteristics including co-assembly procedure or co-assembly of unlimited number of metagenomes via merging of individual assembled metagenomes, both with read mapping for estimation of abundances of genes in each metagenome. Includes binning and bin checking for retrieving individual genomes. | automated metagenomics pipeline, metagenomics analysis steps, metagenomic analysis | Spanish Ministry of Economy and Competitiveness. | DOI:10.3389/fmicb.2018.03349 | Free, Available for download, Freely available | SCR_021821 | SciCrunch Registry | 2026-10-31 12:18:16 | 20 | |||||||||
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Bayesian Analysis of Single Cell Sequencing Resource Report Resource Website 1+ mentions |
Bayesian Analysis of Single Cell Sequencing (RRID:SCR_021829) | data analysis software, data processing software, software application, software resource | Software tool for Bayesian analysis of single cell sequencing data. Used to perform statistical analyses of single cell RNA sequencing datasets in context of supervised experiments. | Bayesian analysis, single cell sequencing data, single cell RNA sequencing datasets, statistical analyses, supervised experiments | PMID:26107944 | Free, Available for download, Freely available | https://github.com/catavallejos/BASiCS | SCR_021829 | SciCrunch Registry | BASiCS, Bayesian Analysis of Single-Cell Sequencing data | 2026-10-31 12:18:21 | 2 | ||||||||
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Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands Resource Report Resource Website 1+ mentions |
Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands (RRID:SCR_021706) | institution | Institute is entirely devoted to psycholinguistics – the study of how we produce and understand language, and how we acquire these skills as first or second language learners. The only institution in the world entirely dedicated to psycholinguistics, and is also one of only three among total of 90 within the Max Planck Society to be located outside Germany. |
has parent organization: Max-Planck-Gesellschaft is parent organization of: ELAN |
SCR_021706 | SciCrunch Registry | 2026-10-31 12:18:19 | 1 | ||||||||||||
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Circa Resource Report Resource Website 10+ mentions |
Circa (RRID:SCR_021828) | data analytics software, data processing software, data visualization software, software application, software resource | Software tool used to plot circular plots and visualize genomic data along genomic locations. | OMGenomics, | Restricted | SCR_021828 | SciCrunch Registry | visualize genomic data, OMGenomics Circa, circular plots | 2026-10-31 12:18:16 | 19 | ||||||||||
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ELAN Resource Report Resource Website 10+ mentions |
ELAN (RRID:SCR_021705) | software resource | Software annotation tool for audio and video recordings. Annotation can be sentence, word or gloss, comment, translation or description of any feature observed in media. Annotations can be created on multiple layers. Tiers can be hierarchically interconnected. Annotation can either be time-aligned to media or it can refer to other existing annotations. Content of annotations consists of Unicode text and annotation documents are stored in XML format (EAF). | Annotation tool, audio recordings, video recordings, Unicode text, annotation documents, documents stored, XML format | has parent organization: Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands | Free, Available for download, Freely available | SCR_021705 | SciCrunch Registry | 2026-10-31 12:18:15 | 28 | ||||||||||
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PsychENCODE Resource Report Resource Website 1+ mentions |
PsychENCODE (RRID:SCR_021760) | consortium, data or information resource, organization portal, portal | Collaboration between research institutes working to provide framework of regulatory genomic elements in individuals with neuropsychiatric disorders.Collaboration has resulted in comprehensive set of manuscripts published in Science providing new insights into biology of developing, adult, and diseased human brain.Manuscripts are organized around three flagship articles, first analyzing human development, second studying disease transcriptomes, and third integrating tissue and single cell data with deep learning approaches. | regulatory genomic elements, neuropsychiatric disorders, diseased human brain, manuscripts published in Science | Free, Freely available | SCR_021760 | SciCrunch Registry | 2026-10-31 12:18:15 | 9 | |||||||||||
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Biomed Resource Watch Resource Report Resource Website |
Biomed Resource Watch (RRID:SCR_021761) | data or information resource, data repository, service resource, storage service resource | Knowledgebase of biomedical research resources. Repository for storing validation and problematic information about variety of entities within biomedical domain, such as antibodies, cell lines, etc. Enables researchers to submit their own claims about specific entity to make validation/problematic information F.A.I.R. (Findable, Accessable, Interoperable, Reuseable). | FAIR data, biomedical data, data validation, problematic information, problematic cell line, problematic antibody | Free, Available for download, Freely available | SCR_021761 | SciCrunch Registry | 2026-10-31 12:18:24 | 0 | |||||||||||
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Rescognito Resource Report Resource Website |
Rescognito (RRID:SCR_021874) | data access protocol, data or information resource, portal, software resource, topical portal, web service | Platform for recognizing and promoting Open Research. Open online service that aims to offer fairer and more democratic platform for recognizing researcher contributions.Allows researchers to openly acknowledge colleagues for meaningful contributions to research process, such as Publication, Mentoring,Teaching,Data sharing,Reproducibility practices, Sharing negative results, Participation in discussion groups,Software development, Clinical trials management, Leadership, Community outreach, Public engagement. ORCID iDs, DOIs, grant IDs and other persistent identifiers are used where available as links to appropriate contributions. | Open Research, Rescognito Inc., platform for recognizing researcher contributions | Free, Freely available | SCR_021874 | SciCrunch Registry | 2026-10-31 12:18:21 | 0 | |||||||||||
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Seq-N-Slide Resource Report Resource Website 10+ mentions |
Seq-N-Slide (RRID:SCR_021752) | software resource | Set of automated workflows for common sequencing based (Illumina) protocols, such as RNA-seq, ChIP-seq, ATAC-seq, WGBS/RRBS methylation, whole genome/exome/targeted variant detection, and contaminant screening. Sequencing data analysis pipelines. | Sequencing data analysis pipelines | Free, Available for download, Freely available | https://igordot.github.io/sns | SCR_021752 | SciCrunch Registry | 2026-10-31 12:18:15 | 20 | ||||||||||
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Halvade Somatic Resource Report Resource Website 1+ mentions |
Halvade Somatic (RRID:SCR_021771) | software resource | Software implements germline and somatic variant calling pipelines based on best practices pipelines from Broad Institute using Spark framework. Produces VCF output file which contains single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels) when supported by used tools. Program requires Spark on either local cluster with one or more nodes, Amazon EMR cluster or Docker image to run. | somatic variant, GATK, Halvade, VCF output file, germline, somatic variant calling, Spark framework | uses: GATK | Free, Available for download, Freely available | SCR_021771 | SciCrunch Registry | Halvade for Spark | 2026-10-31 12:18:16 | 1 | |||||||||
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Online Kappa Calculator Resource Report Resource Website 10+ mentions |
Online Kappa Calculator (RRID:SCR_021770) | software resource | Software tool can be used to calculate kappa, chance adjusted measure of agreement, for any number of cases, categories, or raters. | Calculator, calculate kappa, chance adjusted measure of agreement, number of cases, number of categories, number of | Free, Freely available | SCR_021770 | SciCrunch Registry | 2026-10-31 12:18:20 | 13 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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