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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Wiley Smart Article Resource Report Resource Website |
Wiley Smart Article (RRID:SCR_013817) | software resource, web application | A web application which provides article tools specifically for the chemistry journals Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, and Journal of Physical Organic Chemistry. The addition of Smart Article to these journals allows researchers to search across all five journals and to index and browse facilities for detailed information on compounds. | web application, Wiley, article, tool, Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, Journal of Physical Organic Chemistry |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013817 | SciCrunch Registry | Smart Article | 2026-09-26 02:15:20 | 0 | |||||||||
|
CYANA Resource Report Resource Website 100+ mentions |
CYANA (RRID:SCR_014229) | data analysis software, data processing software, software application, software resource | Software for automated structure calculation of biological macromolecules on basis of conformational constraints from nuclear magnetic resonance. Program for automated NMR protein structure calculation. CYANA requires a sufficient list of assigned chemical shifts and lists of cross-peak positions and columns from 2D, 3D, or4D NOESY spectra in order to calculate the assignment of the NOESY cross-peaks and the 3D structure of the protein in solution. | protein structure, nmr, noesy, 3d structure, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Goethe University Frankfurt am Main; Hessen; Germany has parent organization: RIKEN |
PMID:15318003 PMID:25801209 |
Available to the academic community, Available to commercial user, Pay for license | SCR_021949, biotools:cyana | http://www.las.jp/english/products/cyana.html, https://bio.tools/cyana, https://dbpedia.org/page/CYANA_(software) | SCR_014229 | SciCrunch Registry | 2026-09-26 02:15:23 | 428 | |||||||
|
TopSpin Resource Report Resource Website 5000+ mentions |
TopSpin (RRID:SCR_014227) | data acquisition software, data analysis software, data processing software, software application, software resource | Software package for NMR spectra acquisition, processing, and data analysis. Features include: deconvolution/spectrum simulation/iteration; comprehensive functionalities for processing, displaying and analyzing one and multi-dimensional spectra; and user customization. A full list of features is available on the website. | nmr spectra, data analysis software, data acquisition software | Pay for product | SCR_014227 | SciCrunch Registry | 2026-09-26 02:15:23 | 6242 | |||||||||||
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ExPosition Packages Resource Report Resource Website 1+ mentions |
ExPosition Packages (RRID:SCR_014107) | data analysis software, data processing software, software application, software resource | An R package for descriptive (i.e., fixed-effects) multivariate analysis with singular value decomposition. | data analysis software, r package, multivariate analysis, singular value decomposition |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Texas at Dallas; Texas; USA |
https://cran.r-project.org/web/packages/ExPosition/index.html | SCR_014107 | SciCrunch Registry | CRAN Package Exposition | 2026-09-26 02:15:22 | 1 | |||||||||
|
Sparky Resource Report Resource Website 100+ mentions |
Sparky (RRID:SCR_014228) | data analysis software, data processing software, software application, software resource | A graphical NMR assignment and integration program for proteins, nucleic acids, and other polymers. Sparky displays NMR spectra, the peaks of which users may pick, assign, and integrate using a graphical interface. Users can work with any number of 2, 3 or 4 dimensional spectra simultaneously. Spectra for input to Sparky can be produced with processing programs NMRPipe, Felix, VNMR, XWinNMR or UXNMR. Output consists of text peak lists showing assignments, chemical shifts, volumes, line widths, etc. | graphical nmr, protein integration, nucleic acid integration | has parent organization: University of California at San Francisco; California; USA | Free, Acknowledgement requested | SCR_014228 | SciCrunch Registry | 2026-09-26 02:15:23 | 488 | ||||||||||
|
PubReader Resource Report Resource Website 1+ mentions |
PubReader (RRID:SCR_013814) | software resource, web application | A web application which serves as an alternate way to read scientific literature in PubMed Central and Bookshelf. PubReader features an easy-to-read multi-column display, a figure strip for access to figures, and a search function. It is designed especially to support reading on tablets and other smaller devices but is available for reading on laptops and desktops. | web application, literature, tablet, mobile device |
is used by: PubMed Central is used by: Bookshelf is listed by: Connected Researchers is related to: NCBI is related to: PubMed Central is related to: Bookshelf is related to: Connected Researchers has parent organization: NCBI |
NIH ; NLM ; United States Department of Health and Human Services ; U.S. Government |
Free, Public | SCR_013814 | SciCrunch Registry | 2026-09-26 02:15:20 | 1 | |||||||||
|
Wiley Anywhere Article Resource Report Resource Website |
Wiley Anywhere Article (RRID:SCR_013816) | software resource, web application | A web application which enhances online reading of articles from the Wiley Online Library. Wiley Anywhere Article is an alternate HTML version of articles found on the Wiley Online Library that is supported on all desktop, tablet, and mobile devices. Readers have access to sidebar and tray functions which display references, figures, and other important information while keeping their place in the article. | web application, article, Wiley Online Library |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013816 | SciCrunch Registry | Anywhere Article | 2026-09-26 02:15:20 | 0 | |||||||||
|
Huygens Software Resource Report Resource Website 100+ mentions |
Huygens Software (RRID:SCR_014237) | data processing software, image analysis software, image reconstruction software, software application, software resource | A set of fluorescence microscope image processing packages which perform image restoration, interactive analysis, and volume visualization of 2D and 3D multi channel microscopy images or time series. The restoration is based on different deconvolution algorithms, that permit the recovery of objects from images that are degraded by blurring and noise. Tutorials and documentation are available on the website. | deconvolution, fluorescence microscopy, volume visualization, image analysis software, image restoration | Acknowledgement requested, Freeware is available, Some tools require a license | SCR_014237 | SciCrunch Registry | 2026-09-26 02:15:23 | 468 | |||||||||||
|
Generation R Pediatric MRI Resources Resource Report Resource Website 10+ mentions |
Generation R Pediatric MRI Resources (RRID:SCR_014114) | data or information resource, image collection | An MRI resource which provides age-appropriate images of children. It includes an average, age-appropriate T1-weighted image, constructed from 130 typically developing children ages 6-to-10 and a set of 32 resting-state ICA components. These components were generated from 494 typically developing children, ages 6-to-10 years old, using the MELODIC ICA tool, bootstrapped with 1000 resamples. Both of these resources are described in detail in a manuscript submitted for publication. | image collection, mri, children, ti weighted | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | SCR_014114 | SciCrunch Registry | 2026-09-26 02:15:22 | 15 | |||||||||||
|
Assay Depot Resource Report Resource Website |
Assay Depot (RRID:SCR_013821) | software resource | A web application containing access to research services and products. Users can create custom services, find research services and compare them, request price quotes, exchange files and upload reports, place orders, and track studies. Assay Depot regularly updates its page with new services. | web application, assessment test provider, services | is listed by: Connected Researchers | Public, Account required | SCR_013821 | SciCrunch Registry | AssayDepot | 2026-09-26 02:15:20 | 0 | |||||||||
|
Nanoparticle Tracking Analysis Resource Report Resource Website 10+ mentions |
Nanoparticle Tracking Analysis (RRID:SCR_014239) | NTA | data acquisition software, data processing software, software application, software resource | Software which utilizes the properties of both light scattering and Brownian motion to obtain the particle size distribution of samples in liquid suspension. The Nanoparticle Tracking Analysis software tracks many particles individually and calculates their hydrodynamic diameters using the Stokes Einstein equation. | data acquisition software, particle size distribution, liquid suspension | is listed by: SoftCite | Pay for product | SCR_014239 | SciCrunch Registry | Nanoparticle Tracking Analysis (NTA) | 2026-09-26 02:15:23 | 29 | ||||||||
|
CrimeStat Resource Report Resource Website 10+ mentions |
CrimeStat (RRID:SCR_014243) | data analysis software, data processing software, software application, software resource | A spatial statistics program which provides tools for crime mapping and analyzing crime incident locations. CrimeStat is organized into five sections: data setup, which arranges and organizes the location data; spatial description, which performs analyses such spatial distribution, spatial autocorrelation, and distance and hot spot analysis; spatial modeling, which performs a number of analyses such as Bayesian journey to crime analysis and space-time analysis; crime travel demand modeling, which detects crime patterns and correlations over time and space; and CrimeStat libraries, which are component objects that include all of the routines that were developed through version 2.0 of the regular CrimeStat program. | spacial statistics, data analysis software, crime mapping, crime incident location | has parent organization: University of Michigan; Ann Arbor; USA | National Institute of Justice 1997-IJ-CX-0040; National Institute of Justice 1999-IJ-CX-0044; National Institute of Justice 2002-IJ-CX-0007; National Institute of Justice 2005-IJ-CX-K037 |
Distributed freely for educational or research purposes, May not be re-sold, Acknowledgement requested | http://nij.gov/topics/technology/maps/pages/crimestat.aspx | SCR_014243 | SciCrunch Registry | 2026-09-26 02:15:23 | 14 | ||||||||
|
Paperpile Resource Report Resource Website 1+ mentions |
Paperpile (RRID:SCR_014002) | software resource, web application | A web application which allows users to find reference papers and cite them during the authoring process. Paperpile utilizes Google and Chrome apps in order to directly download PDFs from various databases to Google Drive. If writing in Google Docs, users can search for certain reference papers and insert them into their draft as citations using the Google Drive Paperpile tool. Users can also collaborate on papers and add different citations. | software application, bibliography, authoring, reference management |
uses: Google Docs is used by: Harvard University; Cambridge; United States is used by: Massachusetts Institute of Technology; Massachusetts; USA; is used by: University of California at Berkeley; Berkeley; USA is used by: Duke University; North Carolina; USA is used by: University of Cambridge; Cambridge; United Kingdom is used by: Imperial College London; London; United Kingdom is used by: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland is used by: Max-Planck-Gesellschaft is listed by: Connected Researchers is related to: Google Docs is related to: Connected Researchers |
Fee (for different packages) per month | SCR_014002 | SciCrunch Registry | 2026-09-26 02:15:21 | 4 | ||||||||||
|
Image Synthesis Tools Resource Report Resource Website |
Image Synthesis Tools (RRID:SCR_014123) | data processing software, image processing software, software application, software resource | A collection of software tools developed for medical image synthesis of typically magnetic resonance (MR) brain images. The approaches have been used to create computed tomography (CT) images from MR input. The goal of image synthesis is to recover MR images with a desired optimal contrast for further processing by either registration or segmentation. | image synthesis, image restoration, software, mri, brain image, ct image |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Johns Hopkins University; Maryland; USA |
Available for download | SCR_014123 | SciCrunch Registry | 2026-09-26 02:15:22 | 0 | ||||||||||
|
HDBIG Resource Report Resource Website |
HDBIG (RRID:SCR_014120) | data processing software, image analysis software, software application, software resource, software toolkit | A collection of software tools for high dimensional brain imaging genomics. These tools are designed to perform comprehensive joint analysis of heterogeneous imaging genomics data. HDBIG-SR is an HDBIG toolkit for sparse regression while HDBIG-SCCA is an HDBIG toolkit for sparse association. | image analysis software, genomics, imaging, joint analysis, toolkit, sparse association, sparse regression |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Indiana University; Indiana; USA |
NLM R01 LM011360; NSF IIS-1117335 |
http://www.iu.edu/~hdbig/ | SCR_014120 | SciCrunch Registry | High Dimensional Brain Imaging Genomics Toolkit | 2026-09-26 02:15:22 | 0 | ||||||||
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JMP Resource Report Resource Website 100+ mentions |
JMP (RRID:SCR_014242) | data management software, data processing software, data visualization software, software application, software resource | Statistical software that uses dynamic graphics rather than tables or graphs to visualize raw data. More specific versions of JMP are available for statistical analyses, clinical work, and genomics. Features include statistical modeling, data cleanup, automation and scripting, and experimental design. | statistical software, data visualization, data management, graphic data visualization |
is listed by: Metabolomics Workbench is listed by: SoftCite |
Pay for product, Free trial download is available | SCR_014242 | SciCrunch Registry | 2026-09-26 02:15:23 | 207 | ||||||||||
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Poetica Resource Report Resource Website |
Poetica (RRID:SCR_014005) | software resource, web application | A web-based authoring platform for Wordpress which allows users to write, edit, and track changes and revisions. Users can see all revisions and edits to an artcle and decide which ones may be kept or reverted. After creating an article, users can upload it directly to WordPress. | authoring tool, revision control, Markdown |
is listed by: Connected Researchers is related to: WordPress is related to: Connected Researchers |
Account required, free | SCR_014005 | SciCrunch Registry | 2026-09-26 02:15:21 | 0 | ||||||||||
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Living Image software Resource Report Resource Website 1000+ mentions |
Living Image software (RRID:SCR_014247) | data processing software, software application, software resource, workflow software | In vivo imaging software which facilitates workflow for in vivo optical, X-ray and microCT image acquisition, analysis and data organization., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | in vivo imaging software, workflow software, image acquisition, image analysis, data organization | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014247 | SciCrunch Registry | 2026-09-26 02:15:23 | 3021 | |||||||||||
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AutoAlign Head Resource Report Resource Website 1+ mentions |
AutoAlign Head (RRID:SCR_014245) | alignment software, data processing software, image analysis software, software application, software resource | Software designed to automatically realign brain images for easier cross patient examination regardless of age, disease or head position. It positions and aligns anatomy-related sagittal, coronal and axial slices using anatomical landmarks. | brain, cross patient examination, anatomical landmark, automatic realignment | Pay for product | SCR_014245 | SciCrunch Registry | 2026-09-26 02:15:23 | 2 | |||||||||||
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SoftMax Pro Data Acquisition and Analysis Software Resource Report Resource Website 50+ mentions |
SoftMax Pro Data Acquisition and Analysis Software (RRID:SCR_014240) | data analysis software, data processing software, software application, software resource | A software package for microplate reader control and microplate data analysis. It includes analysis templates for a variety of assays run on Molecular Devices microplate readers. | data analysis software, assay analysis, microplate reader control, microplate data analysis | Pay for product | SCR_014240 | SciCrunch Registry | SoftMax Pro Software | 2026-09-26 02:15:23 | 88 |
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