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https://www.taconic.com/

Supplier of mice for research purposes.

Proper citation: Taconic Biosciences (RRID:SCR_016410) Copy   

•   Source: SciCrunch Registry
  

http://bioconductor.org/packages/release/bioc/html/MetaCyto.html

Software tool for automated meta-analysis of mass and flow cytometry data. Provides functions for preprocessing, automated gating and meta-analysis of cytometry data and collection of cytometry data from the ImmPort database.

Proper citation: MetaCyto (RRID:SCR_016415) Copy   

•   Source: SciCrunch Registry
  

http://fastml.tau.ac.il/

Web application for the reconstruction of ancestral sequences. It computes maximum likelihood ancestral sequence reconstruction based on the phylogenetic relations between homologous sequences.

Proper citation: Fastml (RRID:SCR_016092) Copy   

•   Source: SciCrunch Registry
  

http://homer.ucsd.edu/homer/microarray/index.html

Software tool to analyze the promoters of genes and look for motifs that are enriched in the target gene promoters relative to other promoters. Used for gene based analysis to provide a list of genes that should contain the same elements, such as genes that are co-regulated. It includes gene ontology analysis and can be used to look for RNA motifs in mRNAs.

Proper citation: findMotif.pl (RRID:SCR_016417) Copy   

•   Source: SciCrunch Registry
  

http://www.monicahealthcare.com/products/labour-and-delivery/monica-novii-wireless-patch-system

A peel and stick in-room ambulatory fetal monitoring solution by Monica Healthcare Ltd. Measures fetal heart rate (FHR), maternal heart rate (MHR) and uterine activity (UA).

Proper citation: Monica monitor (RRID:SCR_016416) Copy   

•   Source: SciCrunch Registry
  

http://en.toitu.co.jp/mt-516/

Fetal actocardiograph instrument provided by TOITU CO., LTD.

Proper citation: Fetal Actocardiograph MT-516 (RRID:SCR_016420) Copy   

•   Source: SciCrunch Registry
  

https://omabrowser.org/oma/

Web based database interface for orthology prediction for the inference of orthologs among complete genomes. Used to relate genes across many species., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: OMA Orthology database (RRID:SCR_016425) Copy   

•   Source: SciCrunch Registry
  

https://github.molgen.mpg.de/MPIBR-coattia/MatlabMain/tree/master/behaviorAnalysis/code/NSKtoolbox/externalToolboxes/kCSDv1

Software tool for analyzing recordings from multielectrodes. Source code for the Matlab implementation of the Kernel Current Source Density method. The method operates in one-, two-, and three-dimensional space to perform nonparametric estimation of transmembrane current sources from local field potentials recorded from arbitrarily distributed electrodes.

Proper citation: kCSD-Matlab (RRID:SCR_016424) Copy   

•   Source: SciCrunch Registry
  

https://lifescience.bioquant.com/

Software tool to collect and analyse data on images of tissue slides or welled plates.Supports high-throughput immunofluorescence and immunohistochemistry, stereology, densitometry, and 3D modeling. Used in bioscience research in animal models and human biopsy, developmental neuroscience, traumatic brain/spinal cord injury, glaucoma, eye-movement disorders, cardiovascular disease and muscle disorders.

Proper citation: BIOQUANT Life Science (RRID:SCR_016423) Copy   

•   Source: SciCrunch Registry
  

https://github.com/dmgroppe/Mass_Univariate_ERP_Toolbox

Software toolkit of Matlab functions for analyzing and visualizing large numbers of t-tests performed on event-related potential data. The toolbox supports within-subject and between-subject t-tests with false discovery rate controls and control of the family-wise error rate via permutation tests.

Proper citation: Mass Univariate ERP Toolbox (RRID:SCR_016108) Copy   

•   Source: SciCrunch Registry
  

http://ielvis.pbworks.com/w/page/116347253/FrontPage

Software toolkit consisting of MATLAB and Bash scripts for intracranial electrode localization/visualization. It maps electrodes to various anatomical and functional atlases, and overlays electrode data over functional neuroimaging data. Software for intracranial electrode localization and visualization.

Proper citation: iELVis (RRID:SCR_016109) Copy   

•   Source: SciCrunch Registry
  

http://www.nitrc.org/projects/psc/

Data analysis software that can simultaneously characterize a large number of white matter bundles within and across different subjects for group analysis. It has three major components: construction of the structural connectome for the whole brain, low-dimensional representation of streamlines in each connection, and multi-level connectome analysis.

Proper citation: Mapping Population-based Structural Connectomes (RRID:SCR_016232) Copy   

•   Source: SciCrunch Registry
  

http://www.zucic.org/garlic/

Software application for visualization and editing of biomolecules. Used for the investigation of membrane proteins, visualization of other proteins and geometric objects, and analysis of protein sequences.

Proper citation: Garlic (RRID:SCR_016118) Copy   

•   Source: SciCrunch Registry
  

https://www.rapidnovor.com/antibody-sequencing-service/

Service for monoclonal antibody protein sequencing. It derives the sequences directly from the protein using mass spectrometry and without the need to access the cell line.

Proper citation: REmAb (RRID:SCR_016239) Copy   

•   Source: SciCrunch Registry
  

https://github.com/MRCIEU/PhenoSpD

Software toolkit for phenotypic correlation estimation and multiple testing correction (Spectral Decomposition, SpD) for human phenome using genome-wide association study (GWAS) summary statistics. It is a command line R based tool.

Proper citation: PhenoSpD (RRID:SCR_016359) Copy   

•   Source: SciCrunch Registry
  

https://github.com/alesssia/YAMP

Software for processing and analysis of sequencing data. It has a strong focus on quality control, timely processing, functional annotation, and portability.

Proper citation: YAMP (RRID:SCR_016236) Copy   

•   Source: SciCrunch Registry
  

http://www.gamgi.org/

Software application which provides a graphical interface to build, view and analyze atomic structures. It provides a graphical interface to study atomic structures, to prepare images for presentations, and teach the atomic structure of matter.

Proper citation: Gamgi (RRID:SCR_016116) Copy   

•   Source: SciCrunch Registry
  

https://intbir.nih.gov/

Project whose goal is to improve health care and lessen the global burden of TBI through the discovery of causal relationships between treatments and clinically meaningful outcomes. InTBIR seeks to encourage well-designed, hypothesis-driven studies that include the collection of high quality data followed by rigorous statistical analysis.

Proper citation: International Initiative for Traumatic Brain Injury Research (RRID:SCR_016237) Copy   

•   Source: SciCrunch Registry
  

http://www.tdt.com/openex-suite.html

Software toolkit that is designed for configuration and control of TDT hardware. It can also display and analyze neurophysiology data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: OpenEx (RRID:SCR_016230) Copy   

•   Source: SciCrunch Registry
  

http://bids.neuroimaging.io

Standard specification for organizing and describing outputs of neuroimaging experiments. Used to organize and describe neuroimaging and behavioral data by neuroscientific community as standard to organize and share data. BIDS prescribes file naming conventions and folder structure to store data in set of already existing file formats. Provides standardized templates to store associated metadata in form of Javascript Object Notation (JSON) and tab-separated value (TSV) files. Facilitates data sharing, metadata querying, and enables automatic data analysis pipelines. System to curate, aggregate, and annotate neuroimaging databases. Intended for magnetic resonance imaging data, magnetoencephalography data, electroencephalography data, and intracranial encephalography data.

Proper citation: Brain Imaging Data Structure (BIDs) (RRID:SCR_016124) Copy   

•   Source: SciCrunch Registry