Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
rockd Resource Report Resource Website |
rockd (RRID:SCR_024431) | data or information resource, database | Map database allows to record your geological observations and uses your location to provide spatially informed suggestions for nearby geologic units, time intervals, and fossils. | Map database, record geological observations, | NSF ; UW Geoscience |
Free, Freely available | SCR_024431 | SciCrunch Registry | 2026-09-26 02:19:41 | 0 | ||||||||||
|
Cleveland Clinic Lerner Research Institute Labs and Facilities Resource Report Resource Website |
Cleveland Clinic Lerner Research Institute Labs and Facilities (RRID:SCR_000024) | access service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16,2023.Offers services in peptide synthesis, peptide modification, purification and quality analysis, N-terminal protein sequencing by Edman degradation, biomolecular interaction analysis and equilibrium and kinetic measurements. | peptides synthesis, peptide modification, purification analysis, N-terminal protein sequencing, biomolecular interaction analysis |
is listed by: ScienceExchange is related to: Cleveland Clinic Molecular Biotechnology Core Facility |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_4372 | SCR_000024 | SciCrunch Registry | Cleveland Clinic LRI Labs and Facilities, Cleveland Clinic LRI Labs & Facilities, Cleveland Clinic Lerner Research Institute Labs & Facilities | 2026-09-26 02:19:41 | 0 | ||||||||
|
University of Maryland Labs and Facilities Resource Report Resource Website |
University of Maryland Labs and Facilities (RRID:SCR_000143) | access service resource, core facility, service resource | A collection of laboratories hosted through the University of Maryland. These laboratories include: the BioAnalytical Service Laboratory, Biotechnology Research and Education Program, and the Sequencing Core. | maryland, bioanalytical, biotechnology, sequenceing |
is listed by: ScienceExchange is related to: UMD Sequencing Core - Institute of Bioscience and Biotechnology Research is related to: UMD BioAnalytical Service Laboratory is related to: UMD Bioprocess Scale-Up Facility has parent organization: University of Maryland; Maryland; USA |
Academic, Public | SciEx_4469 | http://www.scienceexchange.com/facilities/4469 | SCR_000143 | SciCrunch Registry | University of Maryland Labs & Facilities, UMD Labs & Facilities, UMD Labs and Facilities | 2026-09-26 02:19:41 | 0 | |||||||
|
Artinis Medical Systems Oxysoft Resource Report Resource Website 1+ mentions |
Artinis Medical Systems Oxysoft (RRID:SCR_024666) | software application, software resource | Software application used to collect, store, view, and analyse all necessary data from the Brite Family devices, PortaMon, PortaLite, OctaMon and OxyMon developed by Artinis Medical Systems and highly customisable to individual requirements. | Artinis Medical Systemscollect, store, view, analyse, Brite Family, PortaMon, PortaLite, OxyMon, devices data, | Restricted | SCR_024666 | SciCrunch Registry | 2026-09-26 02:19:41 | 3 | |||||||||||
|
Core Life Sciences Resource Report Resource Website |
Core Life Sciences (RRID:SCR_000138) | instrument supplier, material resource | A commercial organization that supplies researchers with life science instruments, reagents and consumables, and lab services. | commercial, lab procedures, affymetrix DNA microarray, microRNA, methylation analysis, peptide microarray, quantitative PCR, reagent supplier, instrument supplier | is listed by: ScienceExchange | Public, Commercial, Institutional pricing is available | SciEx_10652 | http://www.scienceexchange.com/facilities/core-life-sciences-inc | SCR_000138 | SciCrunch Registry | Core Life Sciences Inc. | 2026-09-26 02:19:41 | 0 | |||||||
|
Archaezyme Ltd. Resource Report Resource Website |
Archaezyme Ltd. (RRID:SCR_000137) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An enzyme developer and provider of biochemical and consultancy services. Its consultancy services include organizing proof of concepts and planning startup companies, laboratories, and analytical methods. The company also offers writing and editing services for scientific and grant proposals, as well as technology assessments. The company is located in central Israel; however, all of their services are offered worldwide. | enzyme, enzyme developer, enzyme provider, biochemical services, consultation | is listed by: ScienceExchange | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_10649 | SCR_000137 | SciCrunch Registry | Archaezyme | 2026-09-26 02:19:41 | 0 | ||||||||
|
Tecan i-Control Resource Report Resource Website 1+ mentions |
Tecan i-Control (RRID:SCR_024562) | software application, software resource | Microplate reader software as user friendly interface for control of Tecan's Infinite series of microplate readers designed for professional use. | Tecan, Infinite plate reader family system software, | Restricted | https://bif.wisc.edu/wp-content/uploads/sites/389/2017/11/i-control_Manual.pdf | SCR_024562 | SciCrunch Registry | i-Control, Tecan i-Control software | 2026-09-26 02:19:41 | 5 | |||||||||
|
Reads2Map Resource Report Resource Website 1+ mentions |
Reads2Map (RRID:SCR_023593) | software resource, software toolkit | Software package as collection of WDL workflows to build linkage maps from sequencing reads. WDL workflows to build genetic maps from sequencing reads. | Genetic Map, Linkage analysis, Variant Calling, Dosage Calling | 2020-51181-32156 Bill and Melinda Gates Foundation; National Council for Scientific and Technological Development 313269/2021-1; OPP1213329 European Union’s Horizon 2020; USDA National Institute of Food and Agriculture (NIFA) |
DOI:10.1101/2022.11.24.517847 | Free, Available for download, Freely available | SCR_023593 | SciCrunch Registry | 2026-09-26 02:19:38 | 1 | |||||||||
|
StereoCell v2.0 Resource Report Resource Website 1+ mentions |
StereoCell v2.0 (RRID:SCR_024438) | software application, software resource | Enhanced application on generating single cell gene expression profile for high resolution spatial transcriptomics. Registers spatial gene expression map and cell membrane/wall staining image with nuclei staining image as intermediary, thus cell membrane/wall outlines can be directly segmented from cell membrane/wall staining image without correcting nuclei boundaries. | Register spatial gene expression map, register image, generating single cell gene expression profile, high resolution spatial transcriptomics, | Free, Available for download, Freely available | SCR_024438 | SciCrunch Registry | StereoCell | 2026-09-26 02:19:42 | 1 | ||||||||||
|
University at Albany SUNY Labs and Facilities Resource Report Resource Website |
University at Albany SUNY Labs and Facilities (RRID:SCR_000008) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31, 2025. Facility that conducts wide variety of research programs ranging from cell biology to community-based participatory research. Research is conducted through four academic departments including: the Cancer Research Center, the Prevention Research Center, the Public Health Preparedness Center, the Cardiac Quality improvement initiative and the Center for Health Workforce Studies. This facility also hosts research projects and faculty scholarships to aid Master's and Doctoral students in course work, laboratory rotations and internships. | cell biology, cancer research, disease prevention, public health, cardiac, laboratory rotations, internships, course work |
is listed by: ScienceExchange is related to: University at Albany Center for Functional Genomics is related to: University at Albany SUNY Center for Functional Genomics Microarray and Next Gen Sequencing Core Facility has parent organization: University at Albany; New York; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_4303 | SCR_000008 | SciCrunch Registry | UAlbany Labs and Facilities | 2026-09-26 02:19:41 | 0 | ||||||||
|
NCBI accession download script Resource Report Resource Website 1000+ mentions |
NCBI accession download script (RRID:SCR_024130) | software application, software resource | Software tool as partner script to the popular ncbi-genome-download script. Allows to download sequences from GenBank/RefSeq by accession through the NCBI ENTREZ API. | download sequences, GenBank/RefSeq, accession through NCBI ENTREZ API, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/ncbi-acc-download/ | SCR_024130 | SciCrunch Registry | ncbi-acc-download | 2026-09-26 02:19:42 | 1179 | ||||||||
|
tacg Resource Report Resource Website |
tacg (RRID:SCR_024374) | software application, software resource | Software tool as command line program that performs many of the common routines in pattern matching in biological strings. It was originally designed for restriction enzyme analysis and while that still forms core of the program, it has been expanded to fill more roles, sort of 'grep' for DNA. | pattern matching in biological strings, restriction enzyme analysis, | is listed by: Debian | PMID:11882250 | Free, Available for download, Freely available, | https://sources.debian.org/src/tacg/ | SCR_024374 | SciCrunch Registry | 2026-09-26 02:19:41 | 0 | ||||||||
|
WHONET Resource Report Resource Website 10+ mentions |
WHONET (RRID:SCR_024495) | software application, software resource | Software free desktop Windows application for the management and analysis of microbiology laboratory data with a particular focus on antimicrobial resistance surveillance developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance at the Brigham and Women's Hospital in Boston, Massachusetts. WHONET, available in 44 languages, supports local, national, regional, and global surveillance efforts in over 2,300 hospital, public health, animal health, and food laboratories in over 130 countries worldwide. | management and analysis of microbiology laboratory data | is listed by: SoftCite | Free, Available for download, Freely available | SCR_024495 | SciCrunch Registry | 2026-09-26 02:19:42 | 30 | ||||||||||
|
VelvetOptimiser Resource Report Resource Website 50+ mentions |
VelvetOptimiser (RRID:SCR_024376) | software application, software resource | Software tool to run as wrapper script for Velvet assembler and to assist with optimising the assembly.Used to search supplied hash value range for optimum, estimates expected coverage and then searches for optimum coverage cutoff. Estimates insert lengths for paired end libraries. Can optimise assemblies by default optimisation condition or by user supplied one. It outputs the results to subdirectory and records all its operations in logfile. | wrapper script, Velvet assembler, optimising assembly, optimum search, search supplied hash value range, optimum coverage cutoff, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_14601 | https://sources.debian.org/src/velvetoptimiser/ https://sources.debian.org/src/vsearch/ | SCR_024376 | SciCrunch Registry | velvetoptimiser, perl-velvetoptimiser | 2026-09-26 02:19:42 | 60 | |||||||
|
Aeskulap Resource Report Resource Website |
Aeskulap (RRID:SCR_023960) | software application, software resource | Software application as medical image viewer.Able to load series of special images stored in DICOM format for review. Able to query and fetch DICOM images from archive nodes (also called PACS) over the network. Designed to run under Linux. | medical image viewer, Digital Imaging and Communications in Medicine, DICOM, DICOM viewer, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/aeskulap/ | SCR_023960 | SciCrunch Registry | Aeskulap - DICOM Viewer, aeskulap | 2026-09-26 02:19:39 | 0 | ||||||||
|
VisIt Resource Report Resource Website |
VisIt (RRID:SCR_024370) | software application, software resource | Open source software interactive, scalable, visualization, animation and analysis tool. Used to generate visualizations, animate them through time, manipulate them with variety of operators and mathematical expressions, and save resulting images and animations for presentations. | generate visualizations, animation, analysis, save resulting images and animations for presentations, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/visit/ | SCR_024370 | SciCrunch Registry | visit | 2026-09-26 02:19:42 | 0 | ||||||||
|
Frictionless Data Resource Report Resource Website 1+ mentions |
Frictionless Data (RRID:SCR_023713) | software resource, software toolkit | Open source software package for building data infrastructure including data management, data integration, data flows, etc. Includes various data standards and provides software to work with data. | building data infrastructure, data management, data integration, data flows, data standards information, | Free, Available for download, Freely available | https://github.com/frictionlessdata | SCR_023713 | SciCrunch Registry | 2026-09-26 02:19:41 | 7 | ||||||||||
|
ABI-expression-data-generator Resource Report Resource Website |
ABI-expression-data-generator (RRID:SCR_023834) | software application, software resource | Software to download expression data from Allen Mouse Brain data portal ABI. This script will query database, download available data, convert it from the raw/mhd format to NIfTI, and register it to standard space. Package-manager-friendly archive of gene expression maps registered in SMRI standard space from the Allen Mouse Brain Atlas. | Allen Mouse Brain Atlas, gene expression maps, expression data, standard space registration, SMRI standard space, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023834 | SciCrunch Registry | 2026-09-26 02:19:41 | 0 | ||||||||||
|
MView Resource Report Resource Website 1+ mentions |
MView (RRID:SCR_024129) | software application, software resource | Web-compatible database search or multiple alignment viewer, Software tool as command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. | database search, multiple alignment viewer, | is listed by: Debian | PMID:9632837 | Free, Available for download, Freely available, | OMICS_15907 | https://sources.debian.org/src/mview/ | SCR_024129 | SciCrunch Registry | mview | 2026-09-26 02:19:40 | 5 | ||||||
|
JuGEx Resource Report Resource Website 1+ mentions |
JuGEx (RRID:SCR_023838) | software application, software resource | Software tool for integrating tissue transcriptome and cytoarchitectonic segregation. Combines data from Allen Human Brain Atlas and the EBRAINS Human Brain Atlas, specifically to discover how gene activities and microanatomical architectures contribute to brain function and dysfunction. Both tissue transcriptome and probabilistic brain segregation data allow for integrating genetic expression, brain structure, and function knowledge. | Allen Human Brain Atlas, EBRAINS Human Brain Atlas, tissue transcriptome, cytoarchitectonic segregation, integrating tissue transcriptome and cytoarchitectonic segregation, brain function, | is related to: Allen Institute for Brain Science | PMID:29478144 | Free, Available for download, Freely available | https://www.fz-juelich.de/de/inm/inm-1/leistungen/tools-services-und-forschungsdaten/jugex/jugex-download | SCR_023838 | SciCrunch Registry | 2026-09-26 02:19:39 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
