Tools   Select Another Resource Report Type

https://rockd.org/

Map database allows to record your geological observations and uses your location to provide spatially informed suggestions for nearby geologic units, time intervals, and fossils.

Proper citation: rockd (RRID:SCR_024431) Copy   

•   Source: SciCrunch Registry
  

http://www.scienceexchange.com/facilities/cleveland-clinic-lerner-research-institute

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16,2023.Offers services in peptide synthesis, peptide modification, purification and quality analysis, N-terminal protein sequencing by Edman degradation, biomolecular interaction analysis and equilibrium and kinetic measurements.

Proper citation: Cleveland Clinic Lerner Research Institute Labs and Facilities (RRID:SCR_000024) Copy   

•   Source: SciCrunch Registry
  

https://research.umd.edu/capabilities/research-centers-and-institutes

A collection of laboratories hosted through the University of Maryland. These laboratories include: the BioAnalytical Service Laboratory, Biotechnology Research and Education Program, and the Sequencing Core.

Proper citation: University of Maryland Labs and Facilities (RRID:SCR_000143) Copy   

•   Source: SciCrunch Registry
  

https://www.artinis.com/oxysoft

Software application used to collect, store, view, and analyse all necessary data from the Brite Family devices, PortaMon, PortaLite, OctaMon and OxyMon developed by Artinis Medical Systems and highly customisable to individual requirements.

Proper citation: Artinis Medical Systems Oxysoft (RRID:SCR_024666) Copy   

•   Source: SciCrunch Registry
  

https://corelifesciences.com

A commercial organization that supplies researchers with life science instruments, reagents and consumables, and lab services.

Proper citation: Core Life Sciences (RRID:SCR_000138) Copy   

•   Source: SciCrunch Registry
  

http://www.archaezyme.com

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An enzyme developer and provider of biochemical and consultancy services. Its consultancy services include organizing proof of concepts and planning startup companies, laboratories, and analytical methods. The company also offers writing and editing services for scientific and grant proposals, as well as technology assessments. The company is located in central Israel; however, all of their services are offered worldwide.

Proper citation: Archaezyme Ltd. (RRID:SCR_000137) Copy   

•   Source: SciCrunch Registry
  

https://lifesciences.tecan.com/plate_readers/infinite_200_pro?p=tab--3

Microplate reader software as user friendly interface for control of Tecan's Infinite series of microplate readers designed for professional use.

Proper citation: Tecan i-Control (RRID:SCR_024562) Copy   

•   Source: SciCrunch Registry
  

https://github.com/Cristianetaniguti/Reads2Map

Software package as collection of WDL workflows to build linkage maps from sequencing reads. WDL workflows to build genetic maps from sequencing reads.

Proper citation: Reads2Map (RRID:SCR_023593) Copy   

•   Source: SciCrunch Registry
  

https://github.com/STOmics/StereoCell_v2.0

Enhanced application on generating single cell gene expression profile for high resolution spatial transcriptomics. Registers spatial gene expression map and cell membrane/wall staining image with nuclei staining image as intermediary, thus cell membrane/wall outlines can be directly segmented from cell membrane/wall staining image without correcting nuclei boundaries.

Proper citation: StereoCell v2.0 (RRID:SCR_024438) Copy   

•   Source: SciCrunch Registry
  

http://www.albany.edu/sph/5475.php

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31, 2025. Facility that conducts wide variety of research programs ranging from cell biology to community-based participatory research. Research is conducted through four academic departments including: the Cancer Research Center, the Prevention Research Center, the Public Health Preparedness Center, the Cardiac Quality improvement initiative and the Center for Health Workforce Studies. This facility also hosts research projects and faculty scholarships to aid Master's and Doctoral students in course work, laboratory rotations and internships.

Proper citation: University at Albany SUNY Labs and Facilities (RRID:SCR_000008) Copy   

•   Source: SciCrunch Registry
  

https://github.com/kblin/ncbi-acc-download

Software tool as partner script to the popular ncbi-genome-download script. Allows to download sequences from GenBank/RefSeq by accession through the NCBI ENTREZ API.

Proper citation: NCBI accession download script (RRID:SCR_024130) Copy   

•   Source: SciCrunch Registry
  

http://tacg.sourceforge.net/

Software tool as command line program that performs many of the common routines in pattern matching in biological strings. It was originally designed for restriction enzyme analysis and while that still forms core of the program, it has been expanded to fill more roles, sort of 'grep' for DNA.

Proper citation: tacg (RRID:SCR_024374) Copy   

•   Source: SciCrunch Registry
  

https://whonet.org/

Software free desktop Windows application for the management and analysis of microbiology laboratory data with a particular focus on antimicrobial resistance surveillance developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance at the Brigham and Women's Hospital in Boston, Massachusetts. WHONET, available in 44 languages, supports local, national, regional, and global surveillance efforts in over 2,300 hospital, public health, animal health, and food laboratories in over 130 countries worldwide.

Proper citation: WHONET (RRID:SCR_024495) Copy   

•   Source: SciCrunch Registry
  

https://github.com/tseemann/VelvetOptimiser/

Software tool to run as wrapper script for Velvet assembler and to assist with optimising the assembly.Used to search supplied hash value range for optimum, estimates expected coverage and then searches for optimum coverage cutoff. Estimates insert lengths for paired end libraries. Can optimise assemblies by default optimisation condition or by user supplied one. It outputs the results to subdirectory and records all its operations in logfile.

Proper citation: VelvetOptimiser (RRID:SCR_024376) Copy   

•   Source: SciCrunch Registry
  

http://aeskulap.nongnu.org

Software application as medical image viewer.Able to load series of special images stored in DICOM format for review. Able to query and fetch DICOM images from archive nodes (also called PACS) over the network. Designed to run under Linux.

Proper citation: Aeskulap (RRID:SCR_023960) Copy   

•   Source: SciCrunch Registry
  

http://visit.llnl.gov/

Open source software interactive, scalable, visualization, animation and analysis tool. Used to generate visualizations, animate them through time, manipulate them with variety of operators and mathematical expressions, and save resulting images and animations for presentations.

Proper citation: VisIt (RRID:SCR_024370) Copy   

•   Source: SciCrunch Registry
  

https://frictionlessdata.io/

Open source software package for building data infrastructure including data management, data integration, data flows, etc. Includes various data standards and provides software to work with data.

Proper citation: Frictionless Data (RRID:SCR_023713) Copy   

•   Source: SciCrunch Registry
  

https://github.com/IBT-FMI/ABI-expression-data_generator

Software to download expression data from Allen Mouse Brain data portal ABI. This script will query database, download available data, convert it from the raw/mhd format to NIfTI, and register it to standard space. Package-manager-friendly archive of gene expression maps registered in SMRI standard space from the Allen Mouse Brain Atlas.

Proper citation: ABI-expression-data-generator (RRID:SCR_023834) Copy   

•   Source: SciCrunch Registry
  

https://desmid.github.io/mview/

Web-compatible database search or multiple alignment viewer, Software tool as command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats.

Proper citation: MView (RRID:SCR_024129) Copy   

•   Source: SciCrunch Registry
  

https://www.ebrains.eu/brain-atlases/analysis/gene-expression-analysis-in-human-brain-atlas-regions/

Software tool for integrating tissue transcriptome and cytoarchitectonic segregation. Combines data from Allen Human Brain Atlas and the EBRAINS Human Brain Atlas, specifically to discover how gene activities and microanatomical architectures contribute to brain function and dysfunction. Both tissue transcriptome and probabilistic brain segregation data allow for integrating genetic expression, brain structure, and function knowledge.

Proper citation: JuGEx (RRID:SCR_023838) Copy   

•   Source: SciCrunch Registry