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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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SuperCAT Resource Report Resource Website 10+ mentions |
SuperCAT (RRID:SCR_004882) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11,2023. SuperCAT hosts typing databases for the Bacillus cereus group of bacteria. The databases contain MultiLocus Sequence Typing (MLST), MultiLocus Enzyme Electrophoresis (MLEE), and Amplified Fragment Length Polymorphism (AFLP) phylogenetic data. multilocus, sequence, Bacillus cereus, bacteria, Genomics, non-vertebrate, taxonomy, identification | bacillus cereus, bacteria, genomics, identification, multilocus, non-vertebrate, sequence, taxonomy | has parent organization: University of Oslo; Oslo; Norway | PMID:29568820 PMID:20651034 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03509 | SCR_004882 | SuperCAT | 2026-08-21 12:37:39 | 15 | |||||||
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CandiSNPer Resource Report Resource Website |
CandiSNPer (RRID:SCR_005173) | CandiSNPer | service resource, software resource, source code | A webtool which helps in characterizing Single Nucleotide Polymorphisms (SNPs) that are located in the vicinity of an SNP of interest (start SNP). Along with the computation of the maximal Linkage Disequilibrium (LD) region around the start SNP. CandiSNPer provides additional information with respect to the molecular consequences of the SNPs and the genes located in the LD region. | single nucleotide polymorphism, gene, plot, linkage disequilibrium, variant, genome-wide association study, genotyping, perl, r |
is listed by: OMICtools is related to: Ensembl has parent organization: Humboldt University of Berlin; Berlin; Germany |
PMID:20172942 | Free for academic use | OMICS_00169 | SCR_005173 | 2026-08-21 12:37:31 | 0 | |||||||
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ScienceBlogs: Medicine and Health Resource Report Resource Website |
ScienceBlogs: Medicine and Health (RRID:SCR_005176) | Sb Medicine & Health, Sb Medicine and Health | blog, data or information resource, narrative resource | ScienceBlogs posts about Medicine & Health. | medicine, health |
is used by: NIF Data Federation is used by: Integrated Blogs has parent organization: ScienceBlogs |
nlx_144205 | SCR_005176 | ScienceBlogs: Medicine & Health, ScienceBlogs - Medicine and Health, ScienceBlogs: Medicine Health, Sb Medicine Health | 2026-08-21 12:37:34 | 0 | ||||||||
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Wall Street Journal Health Blog Resource Report Resource Website 1+ mentions |
Wall Street Journal Health Blog (RRID:SCR_004914) | WSJ Health Blog | blog, data or information resource, database, narrative resource | Health Blog offers news and analysis on health and the business of health. The blog is written by Katherine Hobson and includes contributions from staffers at The Wall Street Journal, WSJ.com and Dow Jones Newswires. A searchable interface allows the user to find topics of interest. Katherine Hobson has been writing about health and business for more than 15 years, including stints covering cancer, nutrition, exercise science, the U.S. economy and the U.K. beer industry. | health, business | nlx_143942 | SCR_004914 | Health Blog | 2026-08-21 12:37:40 | 1 | |||||||||
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NCI Specimen Resource Locator Resource Report Resource Website |
NCI Specimen Resource Locator (RRID:SCR_004754) | Specimen Resource Locator | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. The Specimen Resource Locator is a database to help researchers locate human specimens (tissue, serum, DNA/RNA, other specimens) for cancer research. It includes tissue banks and tissue procurement systems with access to normal, benign, precancerous and cancerous human tissue from a variety of organs. Researchers specify the types of specimens, number of cases, preservation methods and associated data they require. The Locator will then search the database and return a list of tissue resources most likely to meet their requirements. When no match is obtained, the researcher is referred to the NCI Tissue Expediter ([email protected]). The Tissue expediter is a scientist who can help researchers identify appropriate resources and/or appropriate collaborators. | tumor, normal, microarray |
is listed by: NIDDK Information Network (dkNET) has parent organization: National Cancer Institute |
NCI | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_80312 | SCR_004754 | 2026-08-21 12:37:27 | 0 | |||||||
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The Guardian: Science Resource Report Resource Website |
The Guardian: Science (RRID:SCR_005166) | Guardian: Science | blog, data or information resource, narrative resource | Latest science news, comment, analysis and features from guardian.co.uk, the world''s leading liberal voice. | science, news, comment, analysis, space, medicine, genetics, medical research |
is used by: NIF Data Federation is used by: Integrated Blogs |
nlx_144198 | SCR_005166 | 2026-08-21 12:37:34 | 0 | |||||||||
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Human Tissue Resource Network Resource Report Resource Website |
Human Tissue Resource Network (RRID:SCR_004785) | HTRN | biomaterial supply resource, material resource, tissue bank | Collect, bank, and distribute human tissue and fluid specimens by uniting tissue-based research resources within the OSU Department of Pathology and promoting collaborative research within the OSU Medical Center and related national human research projects. The HTRN is comprised of the Pathology Core Facility (PCF), Tissue Archive Service (TAS), Tissue Procurement Service (TPS), AIDS and Cancer Specimen Resource (ACSR), the Cancer and Leukemia Group B Pathology Coordinating Office (CALGB - PCO), and an Adenoma Polyp Tissue Bank (APTB). | malignant tissue, normal tissue, tissue, solid tumor, cancer, malignancy, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Ohio State University College of Medicine; Ohio; USA is parent organization of: Adenoma Polyp Tissue Bank |
AIDS, Cancer, Leukemia, Adenoma polyp, | Restricted | nlx_144405, SCR_005348, nlx_78270 | http://www.pathology.med.ohio-state.edu/HTRN/TPS/tpsr/default.asp | SCR_004785 | Ohio Tissue Procurement Shared Resources | 2026-08-21 12:37:39 | 0 | |||||
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SGN Resource Report Resource Website 1000+ mentions |
SGN (RRID:SCR_004933) | SGN, SGN ref | data or information resource, database | A clade oriented, community curated database containing genomic, genetic, phenotypic and taxonomic information for plant genomes. Genomic information is presented in a comparative format and tied to important plant model species such as Arabidopsis. SGN provides tools such as: BLAST searches, the SolCyc biochemical pathways database, a CAPS experiment designer, an intron detection tool, an advanced Alignment Analyzer, and a browser for phylogenetic trees. The SGN code and database are developed as an open source project, and is based on database schemas developed by the GMOD project and SGN-specific extensions. | database, clade, genomic, sequence, phenotype, pathway, genetic, taxonomy, annotation, blast, plant genome, bio.tools, FASEB list |
is used by: NIF Data Federation is listed by: bio.tools is listed by: Debian is related to: Sol Genomics Network - Bulk download is related to: AmiGO has parent organization: Boyce Thompson Institute for Plant Research |
USDA ; ATC Inc. Advanced Technologies Cambridge ; NSF 0116076; NSF 9872617; NSF 975866; NSF 0421634 |
PMID:20935049 PMID:16010005 |
Public, The community can contribute to this resource | r3d100012078, nlx_89764, biotools:sol_genomics_network | https://bio.tools/sol_genomics_network, https://doi.org/10.17616/R3FS95 | http://www.sgn.cornell.edu/ | SCR_004933 | SGN ref, Sol Genomics Network | 2026-08-21 12:37:40 | 1261 | |||
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SpliceInfo Resource Report Resource Website |
SpliceInfo (RRID:SCR_005100) | data or information resource, database | A database of mRNA alternative splicing in the human genome. Within it, several modes of mRNA alternative splicing, such as exon skipping, alternative 5''-splicing sites, alternative 3''-splicing sites and mutually exclusive exons are computationally derived and extracted. Finally, for each type of alternative splicing, the flanking intronic sequences are collected and then exploited by motif discovery tools. The tissue-specific information and gene functionalities that correspond to the selected regions are also considered. The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splicing silencer (ESS) and other intronic splicing motifs. | exon, human genome, intron, mrna alternative splicing, mrna splicing | has parent organization: National Chiao Tung University; Hsinchu; Taiwan | nif-0000-03488 | SCR_005100 | SpliceInfo | 2026-08-21 12:37:41 | 0 | |||||||||
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Integrated Disease Resource Report Resource Website |
Integrated Disease (RRID:SCR_004892) | data or information resource, database | A virtual database currently indexing authoritative information on disease and treatment options from NINDS Disorder List and PubMed Health. | disease, treatment, disorder, health, database |
is used by: NIF Data Federation is related to: NINDS Disorder Index is related to: PubMed Health has parent organization: Integrated |
Data are licensed by their respective owners, Use and distribution is subject to the Terms of Use by the original resource | nlx_86401 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-6 http://neuinfo.org/nif/nifgwt.html?query=nlx_86401, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_86401-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-6 | SCR_004892 | NIF Integrated Disease View, NIF Integrated Disease, Integrated Disease View | 2026-08-21 12:37:39 | 0 | |||||||
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AtProbe Resource Report Resource Website |
AtProbe (RRID:SCR_005412) | AtProbe | data or information resource, database | Arabidopsis thaliana promoter binding element database that focuses on specific binding elements on known genes, found with experimental methods. | gene, binding element |
is listed by: OMICtools has parent organization: Cold Spring Harbor Laboratory |
Free | OMICS_00550 | SCR_005412 | AtProbe: Arabidopsis thaliana Promoter Binding Element Database, Arabidopsis thaliana Promoter Binding Element Database | 2026-08-21 12:37:34 | 0 | |||||||
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DATFAP Resource Report Resource Website |
DATFAP (RRID:SCR_005413) | DATFAP | data or information resource, database | A database of transcription factors from 13 plant species, and PCR primers for around 90% of them. | homolog, sequence, transcription factor |
is listed by: OMICtools is related to: Gene Ontology |
PMID:18366738 | Free | OMICS_00552 | SCR_005413 | Database of transcription factors with alignments and primers | 2026-08-21 12:37:39 | 0 | ||||||
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TFinDIT Resource Report Resource Website |
TFinDIT (RRID:SCR_005411) | TFinDIT | data or information resource, database | A database and web service for structural bioinformatics studies of transcription factor (TF)-DNA interactions. Various datasets can be generated based on one or more search options specified by users. | transcription factor-dna interaction, transcription factor, dna, interaction |
is listed by: OMICtools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: University of North Carolina at Charlotte; North Carolina; USA |
OMICS_00544 | SCR_005411 | Transcription Factor-DNA Interaction Data Depository, TFinDIT: Transcription Factor-DNA Interaction Data Depository | 2026-08-21 12:37:44 | 0 | ||||||||
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Phenologs Resource Report Resource Website 1+ mentions |
Phenologs (RRID:SCR_005529) | Phenologs | data or information resource, database | Database for identifying orthologous phenotypes (phenologs). Mapping between genotype and phenotype is often non-obvious, complicating prediction of genes underlying specific phenotypes. This problem can be addressed through comparative analyses of phenotypes. We define phenologs based upon overlapping sets of orthologous genes associated with each phenotype. Comparisons of >189,000 human, mouse, yeast, and worm gene-phenotype associations reveal many significant phenologs, including novel non-obvious human disease models. For example, phenologs suggest a yeast model for mammalian angiogenesis defects and an invertebrate model for vertebrate neural tube birth defects. Phenologs thus create a rich framework for comparing mutational phenotypes, identify adaptive reuse of gene systems, and suggest new disease genes. To search for phenologs, go to the basic search page and enter a list of genes in the box provided, using Entrez gene identifiers for mouse/human genes, locus ids for yeast (e.g., YHR200W), or sequence names for worm (e.g., B0205.3). It is expected that this list of genes will all be associated with a particular system, trait, mutational phenotype, or disease. The search will return all identified model organism/human mutational phenotypes that show any overlap with the input set of the genes, ranked according to their hypergeometric probability scores. Clicking on a particular phenolog will result in a list of genes associated with the phenotype, from which potential new candidate genes can identified. Currently known phenotypes in the database are available from the link labeled ''Find phenotypes'', where the associated gene can be submitted as queries, or alternately, can be searched directly from the link provided. | gene, phenotype, ortholog, genotype, human, mouse, yeast, worm | has parent organization: University of Texas at Austin; Texas; USA | Texas Advanced Research Program ; Welch Foundation ; Packard Fellowship ; March of Dimes ; Texas Institute for Drug and Diagnostic Development ; NSF ; NIH ; NIGMS |
PMID:20308572 | nlx_144624 | SCR_005529 | phenologs.org, Phenologs - Systematic discovery of non-obvious disease models and candidate genes | 2026-08-21 12:37:35 | 4 | ||||||
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Oscillatory Thoughts Resource Report Resource Website |
Oscillatory Thoughts (RRID:SCR_005481) | Oscillatory Thoughts | blog, data or information resource, narrative resource | Bradley Voytek''''s blog is where he tries out new ideas. He will often be wrong, but that''''s the point. He is a Neuroscientist studying human cognition, neuroplasticity, and brain computer interfacing. Into really geeky stuff. World zombie neuroscience expert. Also runs brainSCANr.com with his wife, Jessica. | neuroscience, human, cognition, neuroplasticity, brain computer interfacing | is related to: brainSCANr | nlx_144601 | SCR_005481 | Oscillatory Thoughts - Thoughts of a Neuroscientist | 2026-08-21 12:37:34 | 0 | ||||||||
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WholeBrainCatalog's Channel - YouTube Resource Report Resource Website |
WholeBrainCatalog's Channel - YouTube (RRID:SCR_005436) | WholeBrainCatalog's Channel - YouTube | data or information resource, video resource | Videos uploaded to YouTube by the Whole Brain Catalog. | brain, mouse, atlas, crowdsourcing, cell, neuron, simulation, microscopy, neuroscience, electron microscopy, light microscopy | has parent organization: Whole Brain Catalog | nlx_144533 | SCR_005436 | Whole Brain Catalogs Channel - YouTube, Whole Brain Catalog's Channel - YouTube | 2026-08-21 12:37:34 | 0 | ||||||||
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HighWire Resource Report Resource Website 1+ mentions |
HighWire (RRID:SCR_005316) | HighWire | data or information resource, database, service resource | Service that partners with independent scholarly publishers, societies, associations, and university presses to facilitate the digital dissemination of 1779 journals, reference works, books, and proceedings. It also offers a complete manuscript submission, tracking, peer review, and publishing system for journal editors. | journal, book, reference, scholarly publication, publication, epublishing, proceeding, online publishing, manuscript |
is listed by: OMICtools is affiliated with: SourceData has parent organization: Stanford University; Stanford; California |
The community can contribute to this resource | OMICS_01184 | SCR_005316 | 2026-08-21 12:37:43 | 9 | ||||||||
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Emory Neurology Database Resource Report Resource Website |
Emory Neurology Database (RRID:SCR_005277) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 9, 2025. A database which retains extensive clinical information about study subjects recruited by the Alzheimer's Disease Research Center Clinical Core, as well as other individuals with neurological diseases. In addition to clinical information, the database has basic demographics, medical history (including risk factors such as smoking), and a detailed family history from all subjects. Some entries have neuropsychological measures. Users can access a Summary Database which contains the most commonly requested variables. A data dictionary describing the variables in the Summary Database is available. | alzheimer's disease, mild cognitive impairment, dementia, lewy body disease, parkinson's disease, movement disorder, amyotrophic lateral sclerosis, stroke, sleep disorder, clinical data, family history |
is affiliated with: Emory Alzheimer's Disease Research Center is related to: Emory ADRC Tissue and Biospecimen Banking Facility |
Alzheimer's disease, Mild Cognitive Impairment, Frontotemporal dementia, Dementia, Lewy body disease, Parkinson's disease, Amyotrophic lateral sclerosis, Stroke, Sleep disorder | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144309 | SCR_005277 | 2026-08-21 12:37:42 | 0 | ||||||||
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TIGR Maize database Resource Report Resource Website 1+ mentions |
TIGR Maize database (RRID:SCR_005431) | data or information resource, database | A database of maize genomic sequences, searchable by BLAST, by repeat sequences, and sequence name, gene name, locus, or other landmark. TIGR is a member of the Consortium for Maize Genomics. The Consortium received a funding award from the National Science Foundation in September 2002, to evaluate two gene-enrichment techniques, methylation filtration and high Cot selection, to sequence the maize 'genespace'. Draft assemblies of 287 maize BAC clones selected by the maize community and the Consortium were also produced in the Consortium project. We have recently developed an improved version of the TIGR annotation pipeline optimized for maize genomic assemblies. The latest maize genomic assemblies obtained by gene-enrichment (AZM5) and the 287 maize draft BAC assemblies have been annotated using the improved pipeline. Gene model annotation and functional annotation can be accessed via the TIGR maize BLAST server or the TIGR maize gbrowse display. The first version of the Maize Repeat Database contained 485 characterized maize repeat sequences from the TIGR Cereal Repeat Database. To these we added repetitive sequences downloaded from GenBank and a file of retrotransposon sequences compiled by Phillip SanMiguel (Purdue University). In addition we searched our maize genomic assemblies (AZMs) to identify new repeats. Any sequence within an AZM that showed at least 80% identity over a minimum stretch of 100 bp with an entry in the TIGR Cereal Repeat Database was coded accordingly and added to the Maize Repeat Database. | has parent organization: J. Craig Venter Institute | nif-0000-03557 | SCR_005431 | TIGR Maize database | 2026-08-21 12:37:34 | 5 | ||||||||||
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tmRNA Database Resource Report Resource Website |
tmRNA Database (RRID:SCR_005540) | data or information resource, database | The tmRDB is a tool in the study of the structures and functions of the tmRNA (earlier called 10S RNA). As the name implies, tmRNA has properties of tRNA and mRNA combined in a single molecule. The tmRDB provides aligned, annotated and phylogenetically ordered tmRNA sequences. The alignments of the sequences represent conserved secondary structure elements where each base pair is proven by comparative sequence analysis. Where possible, we established direct links to primary sources. We acknowledge support provided by the National Institutes of Health and the Danish Technical Research Council. tRNA, mRNA, trans-translation, rescue, ribosome, broken mRNA, bacteria, mitochondria chloroplasts, cyanelles, bacteriphage, phylogenetic | bacteria, bacteriphage, broken mrna, cyanelles, mitochondria chloroplasts, mrna, phylogenetic, rescue, ribosome, rna sequence database, sequencing, trans-translation, trna | has parent organization: University of Texas at Tyler; Texas; USA | nif-0000-03566 | http://rnp.uthct.edu/rnp/tmRDB/tmRDB.html | SCR_005540 | tmRDB | 2026-08-21 12:37:45 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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