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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Omixon blog Resource Report Resource Website |
Omixon blog (RRID:SCR_010020) | Omixon blog | blog, data or information resource, narrative resource | We share commentaries, news and announcement that advance our goal of helping clinical labs to adopt next generation sequencing for the analysis of diagnostic gene targets. | is listed by: OMICtools | OMICS_01720 | SCR_010020 | SciCrunch Registry | 2026-10-31 12:20:33 | 0 | ||||||||||
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New York University Specialty Tissue Banks Resource Report Resource Website |
New York University Specialty Tissue Banks (RRID:SCR_010540) | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_26476 | http://ci.med.nyu.edu/research/facilities/tissue-acquisition-and-banking-services-tabs/contact-information | SCR_010540 | SciCrunch Registry | 2026-10-31 12:20:46 | 0 | ||||||||||
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Census Microdata Samples Project Resource Report Resource Website |
Census Microdata Samples Project (RRID:SCR_008902) | Census Microdata Samples Project | data or information resource, database | A data set of cross-nationally comparable microdata samples for 15 Economic Commission for Europe (ECE) countries (Bulgaria, Canada, Czech Republic, Estonia, Finland, Hungary, Italy, Latvia, Lithuania, Romania, Russia, Switzerland, Turkey, UK, USA) based on the 1990 national population and housing censuses in countries of Europe and North America to study the social and economic conditions of older persons. These samples have been designed to allow research on a wide range of issues related to aging, as well as on other social phenomena. A common set of nomenclatures and classifications, derived on the basis of a study of census data comparability in Europe and North America, was adopted as a standard for recoding. This series was formerly called Dynamics of Population Aging in ECE Countries. The recommendations regarding the design and size of the samples drawn from the 1990 round of censuses envisaged: (1) drawing individual-based samples of about one million persons; (2) progressive oversampling with age in order to ensure sufficient representation of various categories of older people; and (3) retaining information on all persons co-residing in the sampled individual''''s dwelling unit. Estonia, Latvia and Lithuania provided the entire population over age 50, while Finland sampled it with progressive over-sampling. Canada, Italy, Russia, Turkey, UK, and the US provided samples that had not been drawn specially for this project, and cover the entire population without over-sampling. Given its wide user base, the US 1990 PUMS was not recoded. Instead, PAU offers mapping modules, which recode the PUMS variables into the project''''s classifications, nomenclatures, and coding schemes. Because of the high sampling density, these data cover various small groups of older people; contain as much geographic detail as possible under each country''''s confidentiality requirements; include more extensive information on housing conditions than many other data sources; and provide information for a number of countries whose data were not accessible until recently. Data Availability: Eight of the fifteen participating countries have signed the standard data release agreement making their data available through NACDA/ICPSR (see links below). Hungary and Switzerland require a clearance to be obtained from their national statistical offices for the use of microdata, however the documents signed between the PAU and these countries include clauses stipulating that, in general, all scholars interested in social research will be granted access. Russia requested that certain provisions for archiving the microdata samples be removed from its data release arrangement. The PAU has an agreement with several British scholars to facilitate access to the 1991 UK data through collaborative arrangements. Statistics Canada and the Italian Institute of statistics (ISTAT) provide access to data from Canada and Italy, respectively. * Dates of Study: 1989-1992 * Study Features: International, Minority Oversamples * Sample Size: Approx. 1 million/country Links: * Bulgaria (1992), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/02200 * Czech Republic (1991), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06857 * Estonia (1989), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06780 * Finland (1990), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06797 * Romania (1992), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06900 * Latvia (1989), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/02572 * Lithuania (1989), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/03952 * Turkey (1990), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/03292 * U.S. (1990), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06219 | housing condition, international, minority, population, census, census data, social, economic, middle adult human, late adult human, social science, behavioral science, housing census, social condition, economic condition |
is listed by: Inter-university Consortium for Political and Social Research (ICPSR) is related to: National Archive of Computerized Data on Aging (NACDA) |
Aging, Social phenomena | United Nations Population Fund ; NIA ; United Nations Economic Commission for Europe |
Variable | nlx_151430 | SCR_008902 | SciCrunch Registry | Status of Older Persons in UNECE Countries, Dynamics of Population Aging in ECE Countries, PAU Census Microdata Samples Project, Population Activities Unit Census Microdata Samples Project, Dynamics of Population Aging in Economic Commission for Europe Countries | 2026-10-31 12:20:37 | 0 | |||||
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PhenoExplorer Resource Report Resource Website |
PhenoExplorer (RRID:SCR_008980) | PhenoExplorer | analysis service resource, data analysis service, production service resource, service resource | A tool for finding dbGaP studies containing phenotype variables of interest. Lack of standardization makes locating and categorizing previously measured variables difficult. This query tool for biomedical researchers is to identify studies and phenotype variables of interest. | phenotype |
is related to: NCBI database of Genotypes and Phenotypes (dbGap) has parent organization: University of Southern California; Los Angeles; USA has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
NHLBI 1UH2HL108780 | Public, Registration required | nlx_152227 | SCR_008980 | SciCrunch Registry | 2026-10-31 12:20:43 | 0 | |||||||
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NetAge Database Resource Report Resource Website 1+ mentions |
NetAge Database (RRID:SCR_010224) | NetAge | data or information resource, database | Database that contains gene sets and microRNA-regulated protein-protein interaction networks for longevity, age-related diseases and aging-associated processes. | longevity, protein-protein interaction, mirna-regulated protein-protein interaction network, gene, protein, mirna, biogerontology | has parent organization: Ben-Gurion University of the Negev; Beer-Sheva; Israel | Age-related disease, Aging | PMID:20186480 | Acknowledgement requested, Public | nlx_156769 | SCR_010224 | SciCrunch Registry | 2026-10-31 12:20:33 | 6 | ||||||
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SPIKE Resource Report Resource Website 100+ mentions |
SPIKE (RRID:SCR_010466) | SPIKE | data or information resource, database, service resource | Database of curated human signaling pathways with an associated interactive software tool for analysis and dynamic visualization of pathways. Individual pathway maps can be viewed and downloaded; the entire database may be browsed, or launched via a map viewer tool that allows dynamic visualization of the database and save networks in XGMML format that can be viewed in all generic XGMML viewers. Map Topics * Cell cycle progress and check points * DNA damage response * Programmed cell death related processes * Stress-activated transcription factors * Mitogen-activated protein kinase pathways * Immune response signaling * HEarSpike: hearing related pathways | visualization, analysis, cellular, signaling pathway, regulatory network, function, genomic, proteomic, cell cycle, dna damage, cell death, stress, transcription factor, mitogen, protein kinase, pathway, immune response, signaling, hearing, dna damage response, programmed cell death, development, ear, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian is related to: ConsensusPathDB has parent organization: Tel Aviv University; Ramat Aviv; Israel |
Cancer | A-T Children's Project ; Wolfson Foundation ; European Union FP7 ; Israel Science Foundation |
PMID:21097778 PMID:18289391 |
biotools:spike, nlx_157705 | https://bio.tools/spike | SCR_010466 | SciCrunch Registry | Signaling Pathway Integrated Knowledge Engine | 2026-10-31 12:20:34 | 131 | ||||
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COVIBD Resource Report Resource Website |
COVIBD (RRID:SCR_009155) | software application, software resource | Software application that refines linkage analysis of affected sibpairs by considering attributes or environmental exposures thought to affect disease liability. This refinement utilizes a mixture model in which a disease mutation segregates in only a fraction of the sibships, with the rest of the sibships unlinked. Covariate information is used to predict membership within the two groups corresponding to the linked and unlinked sibships. The pre-clustering model uses covariate information to first form two probabilistic clusters and then tests for excess IBD-sharing in the clusters. The Cov-IBD model determines probabilistic group membership by joint consideration of covariate and IBD values. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154207, SCR_009109, nlx_154275 | SCR_009155 | SciCrunch Registry | R/COVIBD | 2026-10-31 12:20:44 | 0 | |||||||||
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METLIN Resource Report Resource Website 1000+ mentions |
METLIN (RRID:SCR_010500) | METLIN | data or information resource, database | A public repository of metabolite information as well as tandem mass spectrometry data is provided to facilitate metabolomics experiments. It contains structures and represents a data management system designed to assist in a broad array of metabolite research and metabolite identification. An annotated list of known metabolites and their mass, chemical formula, and structure are available. Each metabolite is linked to outside resources for further reference and inquiry. MS/MS data is also available on many of the metabolites. | metabolite, tandem, mass spectrometry, metabolomics, mass, chemical formula, structure, FASEB list |
is listed by: NIDDK Information Network (dkNET) is related to: KEGG has parent organization: Scripps Research Institute |
PMID:16404815 | nlx_158116, r3d100012311 | SCR_010500 | SciCrunch Registry | Metabolite and Tandem MS Database (METLIN), METLIN Metabolite Database, Metabolite and Tandem MS Database | 2026-10-31 12:20:45 | 2825 | |||||||
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Atlasing of the basal ganglia Resource Report Resource Website 1+ mentions |
Atlasing of the basal ganglia (RRID:SCR_009431) | Atlasing of the basal ganglia | atlas, data or information resource | This atlas takes advantage of ultra-high resolution 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in-vivo. The atlas includes probability maps of the Subthalamic Nucleus (STh) using T2*-imaging. For now it has been created on 13 young healthy participants with a mean age of 24.38 (range: 22-28, SD: 2.36). We recently also created atlas STh probability maps from 8 middle-aged participants with a mean age of 50.67 (range: 40-59, SD: 6.63), and 9 elderly participants with a mean age of 72.33 (range: 67-77, SD: 2.87). You can find more details about the creation of these maps in the following papers: Young: http://www.ncbi.nlm.nih.gov/pubmed/22227131 Middle-aged & Elderly: http://www.ncbi.nlm.nih.gov/pubmed/23486960 Participating institutions are the Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany, and the Cognitive Science Center Amsterdam, University of Amsterdam, the Netherlands. | magnetic resonance, mri, late adult human, early adult human, middle adult human, basal ganglia |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: LEAD-DBS |
Aging | PMID:22227131 PMID:23486960 |
Creative Commons License | nlx_155581 | SCR_009431 | SciCrunch Registry | 2026-10-31 12:20:33 | 6 | ||||||
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CPSS Resource Report Resource Website 10+ mentions |
CPSS (RRID:SCR_009395) | CPSS | analysis service resource, data analysis service, production service resource, service resource | Computational Platform for analysis of Small RNA deep Sequencing data BioStaCs group., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | is listed by: OMICtools | PMID:22576177 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00355 | SCR_009395 | SciCrunch Registry | 2026-10-31 12:20:38 | 23 | ||||||||
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AIMS Data Centre Resource Report Resource Website 10+ mentions |
AIMS Data Centre (RRID:SCR_010475) | AIMS Data Centre | data or information resource, database | Data catalogue, gathered by the Australian Institute of Marine Science (AIMS), a tropical marine research center, on marine science topics including reef weather, sea temperature, cyclones, and water quality. | marine science, reef, marine, australia | is listed by: re3data.org | Creative Commons Attribution License, v3 Australia, Access to some data will be via legal data agreement. | nlx_157748, r3d100010933 | SCR_010475 | SciCrunch Registry | AIMS Data Catalogue, Australian Institute of Marine Science Data Centre, AIMS Data Center | 2026-10-31 12:20:39 | 10 | |||||||
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ALADDIN Resource Report Resource Website 50+ mentions |
ALADDIN (RRID:SCR_010476) | ALADDIN | data or information resource, database | Numerical database of atomic and molecular processes and particle-surface interactions. It has formatted data on atomic structure and spectra (energy levels,wave lengths, and transition probabilities); electron and heavy particle collisions with atoms, ions, and molecules (cross sections and/or rate coefficients, including, in most cases, analytic fit to the data); sputtering of surfaces by impact of main plasma constituents and self sputtering; particle reflection from surfaces; thermophysical and thermomechanical properties of beryllium and pyrolytic graphites. | atomic, molecular, collision, radiative, process, structure, particle-solid surface interaction, physico-chemical, thermo-mechanical, material, fusion energy, plasma, FASEB list | is listed by: re3data.org | nlx_157749, r3d100010726 | SCR_010476 | SciCrunch Registry | ALADDIN Database, ALADDIN Numerical Database, ALADDIN (A Labelled Atomic Data INterface) | 2026-10-31 12:20:34 | 89 | ||||||||
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bNAber Resource Report Resource Website 1+ mentions |
bNAber (RRID:SCR_010510) | bNAber | data or information resource, database | bNAber is the Broadly Neutralizing Antibody E-Resource Database, analysis, visualization, and data discovery tool for broadly neutralizing HIV-1 antibodies (bNAbs). bNAber seeks to be a vital tool in the search for an AIDS vaccine. | sanford burnham medical research institute, hiv, aids | is related to: CHAVI-ID | HIV, AIDS | NIAID UM1AI100663; NIGMS R01GM101457 |
nlx_158732 | SCR_010510 | SciCrunch Registry | 2026-10-31 12:20:34 | 7 | |||||||
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Science in the Open Resource Report Resource Website |
Science in the Open (RRID:SCR_010511) | blog, data or information resource, narrative resource | Science in the Open: This blog contains the thoughts of Cameron Neylon on the technical and social issues involved with ''Open Research''. Most people would agree Open Research includes freely accessible literature or perhaps making raw data available. Others might think it also involves people working on collaborative documents such as Wikis or the freedom to re-use the published literature or data. At its logical extreme Open Research includes making all the details of what we do freely available as it happens. Many people find this scarey. Some, perhaps a growing number, find it tremendously exciting. | nlx_83437 | SCR_010511 | SciCrunch Registry | 2026-10-31 12:20:33 | 0 | ||||||||||||
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HOL Resource Report Resource Website 10+ mentions |
HOL (RRID:SCR_010237) | HOL | data or information resource, database | An online database mainly about the order Hymenoptera. It contains some 115,000 species and literally millions of specimens in collections around the world. Some parts of this database have extensive information available (e.g., Proctotrupoidea, Platygastroidea, Ceraphronoidea, Apoidea), even to the level of specimens (see Platygastridae, Pelecinidae, Monomachidae, Stephanidae). These data have been gathered with the collaboration of a number of colleagues. Other taxa still need work. Hymenoptera Online (HOL) is no longer solely dedicated to Hymenoptera as recent acquisitions have expanded the taxonomic scope of this resource to include Hemiptera, Coleoptera, Mites, Fishes, and others with the help of a number of tireless collaborators. If you would like to contribute to the further development and enhancement of this resource or need technical assistance related to Hymenoptera Online services, please contact HOL Help, Norman F. Johnson, or the HOL Google+ Page. Search for taxa, collections, authors, collectors and specimens by typing your simple query in the text box below. Taxon name searches are case-sensitive and a wildcard (%) will automatically be appended to the end of your query (e.g. Telenomus); the same applies to collectors and authors (e.g. Johnson), collections (e.g. CNC), places (e.g. Bahia), journals (e.g. Memoirs), and specimen searches by specimen ID (e.g. ANIC DB 32). | has parent organization: Ohio State University; Ohio; USA | nlx_156856 | https://mbd-db.osu.edu/hol/taxon_name/323e0d14-2fa1-4b42-98cf-f4f422668e24?filters%5Bfilter_options%5D%5B%5D=56410721-bba5-4281-90fd-d273d4dd281e | SCR_010237 | SciCrunch Registry | Hymenoptera Online (HOL) | 2026-10-31 12:20:39 | 23 | ||||||||
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Access to Archival Databases Resource Report Resource Website |
Access to Archival Databases (RRID:SCR_010479) | AAD | data or information resource, database | Database of the U.S. National Archives and Records Administration that allows users to search by keyword or category. Specific topics in personal history, private sectors, places, wars or time periods can be chosen to help filter your research findings of the 85 million electronic records that have been made available. | political activists, social history, government information | is listed by: re3data.org | nlx_157752, r3d100000002 | SCR_010479 | SciCrunch Registry | Access to Archival Databases (AAD) | 2026-10-31 12:20:45 | 0 | ||||||||
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CARP Resource Report Resource Website 50+ mentions |
CARP (RRID:SCR_009021) | carp | analysis service resource, data analysis service, production service resource, service resource | Service that generates Ramachandran-like plots of carbohydrate linkage torsions in pdb-files. The Ramachandran Plot, where backbone torsion angles are plotted against each other, is a frequently used tool to evaluate the quality of a protein 3D structure. For carbohydrate structures, linkage torsions can be evaluated in a similar way. Preferred Phi/Psi values of the torsion angles of glycosidic bonds depend strongly on the types of monosaccharides involved in the linkage, the kind of linkage (1-3, 1-4, etc) as well as the degree of branching of the structure. CARP analyses carbohydrate data given in PDB files using the pdb2linucs algorithm. For each different linkage type a separate plot is generated. The user can choose between two sources for plot background information for comparison: data obtained from PDB provided by GlyTorsion or from GlycoMapsDB. GlycoMapsDB provides calculated conformational maps, which show energetically preferred regions for a specific linkage, while PDB data are based on experimentally solved structures. For seldom occuring linkages, however, PDB data are often rare, so maybe not sufficient background information for comparison will be available from this source., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | carbohydrate, 3d structure, protein, plot |
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: GlyTorsion is related to: GlycoMapsDB is related to: pdb2linucs has parent organization: glycosciences.de |
DFG | PMID:15608187 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152878 | SCR_009021 | SciCrunch Registry | CArbohydrate Ramachandran Plot, carp: CArbohydrate Ramachandran Plot | 2026-10-31 12:20:44 | 65 | |||||
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LIBSVM Resource Report Resource Website 1000+ mentions |
LIBSVM (RRID:SCR_010243) | software application, software resource | An integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM) from the laboratory of Chih-Chung Chang and Chih-Jen Lin. It supports multi-class classification. | software repository, vector classification, regression, distribution estimation |
is used by: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND) has parent organization: National Taiwan University; Taipei; Taiwan |
nlx_156876, nlx_157763, SCR_003614 | SCR_010243 | SciCrunch Registry | LIBSVM -- A Library for Support Vector Machines, Library for Support Vector Machines | 2026-10-31 12:20:34 | 1231 | |||||||||
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Robotic Flower System for Bee Behavior project Resource Report Resource Website |
Robotic Flower System for Bee Behavior project (RRID:SCR_021584) | data or information resource, instrument resource, portal, project portal | Portal provides system of robotic artificial flowers to study bumble bee behavior. System is designed to capture data when animal is feeding by placement of IR beams that are broken when engaged on flowers feeding mechanism and sends data to control unit.Developed by University of Oulu in Finland scientists. System includes control unit, separate artificial flowers, and personal computer. Control unit is to handle electronics of flowers, collect data from them, and to send data to computer. Flowers contain infrared sensor, their associated electronics, and electromechanical device that offers small, precise amount of sugar solution from reservoir. Computer runs software that controls refilling rate and data collection via the control unit. Circuit diagrams, parts list, and control software and source code are available in paper supplemental information. | Robotic artificial flowers, study bumble bee behavior, animal feeding data, flowers feeding mechanism, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1002/ece3.2062 | Free, Freely available | SCR_021584 | SciCrunch Registry | Robotic Flower System for Bee Behavior | 2026-10-31 12:18:13 | 0 | ||||||||
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Homecage Task Training and Mesoscale Imaging project Resource Report Resource Website |
Homecage Task Training and Mesoscale Imaging project (RRID:SCR_021580) | data or information resource, instrument resource, portal, project portal | Project to build and use new generation of home cages with emphasis on training for simple headfixed tasks during simultaneous autonomous acquisition of mesoscale brain imaging data. Homecage platform for automated task training and mesoscale brain imaging for mice developed by University of British Columbia scientists. | Instrument, automated task training, mesoscale brain imaging, mice, OpenBehavior |
is listed by: OpenBehavior is related to: AutoHeadFix has parent organization: University of British Columbia; British Columbia; Canada |
DOI:10.7554/elife.55964 | Free, Freely available | SCR_021580 | SciCrunch Registry | Homecage Task Training and Mesoscale Imaging | 2026-10-31 12:18:16 | 0 |
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