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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Manually Labeled MRI Brain Scan Database Resource Report Resource Website 1+ mentions |
Manually Labeled MRI Brain Scan Database (RRID:SCR_009604) | data or information resource, database | Collection of neuroanatomically labeled MRI brain scans, created by neuroanatomical experts. Regions of interest include the sub-cortical structures (thalamus, caudate, putamen, hippocampus, etc), along with ventricles, brain stem, cerebellum, and gray and white matter and sub-divided cortex into parcellation units that are defined by gyral and sulcal landmarks. | collection, neuroanatomical, MRI, brain, scan, data, thalamus, caudate, putamen, hippocampus, ventricle, cerebellum, cortex |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Neuromorphometrics works with: MRI Neuroanatomy Labeling Services works with: MRI Neuroanatomy Labeling Services |
NIMH R43 MH084358; NIMH R43 MH60507; NIMH R44 MH60507 |
Commercially available | nlx_155805 | http://www.nitrc.org/projects/manuallabels | SCR_009604 | SciCrunch Registry | 2026-10-31 12:20:32 | 1 | |||||||
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Integrated Cell Lines Resource Report Resource Website |
Integrated Cell Lines (RRID:SCR_008994) | data or information resource, database | A virtual database currently indexing available cell lines from: Coriell Cell Repositories, International Mouse Strain Resource (IMSR), ATCC, NIH Human Pluripotent Stem Cell Registry, NIGMS Human Genetic Cell Repository, and Developmental Therapeutics Program. | cell line, cell repository, database, integrated |
is used by: NIF Data Federation is listed by: One Mind Biospecimen Bank Listing is related to: Coriell Cell Repositories is related to: International Mouse Strain Resource is related to: ATCC is related to: NIH Human Pluripotent Stem Cell Registry is related to: NIGMS Human Genetic Cell Repository is related to: Developmental Therapeutics Program has parent organization: Integrated |
Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License | nlx_152524 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-3 https://neuinfo.org/mynif/search.php?q=*&cf=Biospecimen&t=indexable&nif=nlx_152524-1, https://neuinfo.org/mynif/search.php?q=nlx_152524&t=indexable&nif=nlx_152524-1&b=0&r=20, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_152524-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-3 | SCR_008994 | SciCrunch Registry | Integrated Cell Lines View, NIF Integrated Cell Lines View, Integrated CL, NIF Integrated Cell Lines, Neuroscience Information Framework Integrated Cell Lines, NIF Cell Lines, Cell Lines View | 2026-10-31 12:20:38 | 0 | |||||||
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OHSU Animal Model Support Core Facility Resource Report Resource Website 1+ mentions |
OHSU Animal Model Support Core Facility (RRID:SCR_009994) | OHSU TMM, TMM Core | access service resource, core facility, service resource | Core assists investigators with developing genetically engineered rodent models of human diseases for studying mutant genes and investigating molecular mechanisms underlying pathological processes. | ABRF, USEDit, developing genetically engineered rodent models, human diseases, mutant genes, pathological processes |
is listed by: Eagle I is related to: USEDit has parent organization: Oregon Health and Science University; Oregon; USA |
SciEx_9275, SCR_011002, nlx_156461 | http://ohsu.eagle-i.net/i/0000012a-2501-9822-d994-629180000000, http://www.scienceexchange.com/facilities/transgenic-mouse-models-ohsu | SCR_009994 | SciCrunch Registry | OHSU Transgenic Mouse Models Core Laboratory, Oregon Health & Science University Transgenic Mouse Models, Oregon Health and Science University Transgenic Mouse Models, OHSU Transgenic Mouse Model Shared Resource | 2026-10-31 12:20:38 | 2 | |||||||
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Autism Genetic Database Resource Report Resource Website 1+ mentions |
Autism Genetic Database (RRID:SCR_010545) | AGD | data or information resource, database | The Autism Genetic Database currently contains the full list of autism susceptibility genes as well as all Copy Number Variations (CNVs) found to have a relationship to autism. Additionally, all noncoding RNA molecules (snoRNA, miRNA, and piRNA) and chemically induced fragile sites are stored as well. This information is currently accessible via an in-house human genome browser focusing specifically on the chromosomal features associated with autism, and in a tabular format broken down by chromosome. Genome Browser:A genome browser that displays the genes, CNVs, ncRNAs and fragile sites in an easily accessible graphical visualization tool Tabular Data Display:A tabular data display that allows the user to observe the chromosomal spatial relationship between the genes, CNVs, ncRNAs and fragile sites. This also provides links to Entrez and pubmed for each gene, as well as miRBase for miRNAs, snoRNA-LBME-db for snoRNAs, and piRNABank for piRNAs. | has parent organization: University of Kansas; Kansas; USA | Autism Speaks 01.4506; NICRR P20 RR0146475 |
PMID:19778453 | nlx_29034 | SCR_010545 | SciCrunch Registry | Autism Genetic Database: A comprehensive database for autism susceptibility gene-CNVs integrated with known noncoding RNAs and fragile sites | 2026-10-31 12:20:34 | 5 | |||||||
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GC/GCF Resource Report Resource Website 1+ mentions |
GC/GCF (RRID:SCR_009075) | software application, software resource | Software application where GC implements the genomic control models. GCF implements the basic Genomic Control approach, but adjusts the p-values for uncertainty in the estimated effect of substructure. This approach is preferable if a large number of tests will be evaluated because it provides a more accurrate assessment of the significance level for small p-values. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, linux | is listed by: Genetic Analysis Software | SCR_000846, nlx_154072, nlx_154584 | SCR_009075 | SciCrunch Registry | R/GCF, R/GC, Genomic Control | 2026-10-31 12:20:32 | 1 | |||||||||
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International Biobank, Inc. Resource Report Resource Website |
International Biobank, Inc. (RRID:SCR_010549) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_32905 | SCR_010549 | SciCrunch Registry | 2026-10-31 12:20:46 | 0 | ||||||||||||
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Kannisto-Thatcher Database on Old Age Mortality Resource Report Resource Website 1+ mentions |
Kannisto-Thatcher Database on Old Age Mortality (RRID:SCR_008936) | K-T database | data or information resource, database | A database that includes data on death counts and population counts classified by sex, age, year of birth, and calendar year for more than 30 countries. This database was established for estimating the death rates at the highest ages (above age 80). The core set of data in the database was assembled, tested for quality, and converted into cohort mortality histories by V��in�� Kannisto, the former United Nations advisor on demographic and social statistics. Comparable materials on England and Wales, was made available by A. Roger Thatcher, the former Director of the Office of Population Censuses and Surveys and Registrar-General of England and Wales (Kannisto, 1994). The Kannisto-Thatcher database was computerized under the supervision of James W. Vaupel at the Aging Research Unit of the Centre for Health and Social Policy at Odense University Medical School in 1993. Currently, the database is maintained by the Max Planck Institute for Demographic Research, Germany. | mortality, death, population, late adult human, international | has parent organization: Max Planck Institute for Demographic Research; Mecklenburg-Vorpommern; Germany | Aging, Death | Danish Research Councils ; NIA |
Public; must register and agree to terms. For scientific purposes only. | nlx_151834 | SCR_008936 | SciCrunch Registry | Kannisto-Thatcher Database on Old Age Mortality at the Max Planck Institute for Demographic Research | 2026-10-31 12:20:31 | 1 | |||||
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Riken BRC Cell Bank Resource Report Resource Website 10+ mentions |
Riken BRC Cell Bank (RRID:SCR_010553) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_42614 | SCR_010553 | SciCrunch Registry | 2026-10-31 12:20:34 | 19 | ||||||||||||
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Taiwan Biobank Resource Report Resource Website 10+ mentions |
Taiwan Biobank (RRID:SCR_010557) | biomaterial supply resource, material resource, tissue bank | Taiwan Biobank intends to conduct large-scale cohort studies and case-control studies on local diseases. The cohort study will call for 200,000 volunteers, while the case-control study will invite 100,000 patients with the 10 to 15 most common diseases. These studies will enable Taiwan Biobank to identify the disease-causing factors and mechanisms of common diseases to facilitate the development of better treatment and prevention, reduce the cost of medical treatment and make it possible to achieve the goal of improving the island nation’s health. | nlx_36653 | SCR_010557 | SciCrunch Registry | 2026-10-31 12:20:46 | 22 | ||||||||||||
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http://virginiahughes.com/ Resource Report Resource Website |
http://virginiahughes.com/ (RRID:SCR_010558) | blog, data or information resource, narrative resource | Virginia Hughes'' Research Blog | nlx_37352 | SCR_010558 | SciCrunch Registry | 2026-10-31 12:20:40 | 0 | ||||||||||||
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YeastFunc Resource Report Resource Website |
YeastFunc (RRID:SCR_010561) | YeastFunc | data or information resource, database, image | YeastFunc is a public database for browsing of quantitative S. cerevisiae gene function predictions, gene function linkage predictions, and the evidence behind the predictions, overlayed upon the experimentally verified annotations as taken from the SGD, MGI and Ensembl Gene databases, respectively. Three aspects of gene function predictions are displayed: * First, for a particular gene, users can view all functions ranked by certainty that the corresponding gene-function pair is a true annotation. * Second, for a particular function, users can view all genes ranked by certainty. * The third aspect is functional linkage predictions, displayed alongside the first two aspects as gene-centered and function-centered images, respectively, and editable via Cytoscape. These functional linkage graphs are independently informative, though they are also used as a step in one of the gene function prediction techniques whose certainty scores are displaying on this site, so they can be treated as evidence. Evidence leading to all gene function predictions in the first two aspects as well as all experimentally verified gene function annotation is displayed alongside each of the first two aspects, allowing the user to understand the basis for the certainty score. To get started type a Gene Ontology ID, an SGD ID, an ORF ID, an Ensembl gene id, an Entrez gene id, a Uniprot id, a standard gene name, or a general search term in the text box. The results of your search will appear below the search box. These results are solely Gene Ontology terms and genes for the species that you selected. Click the result that you would like to investigate further. Note the paging toolbar at the bottom of the results list. If you are interested in performing your own analyses upon all prediction scores displayed on this site you may download the file. Of the 15,633,440 scored yeast gene-function pairs, 6,368 genes have scores and 4,877 genes have at least one experimentally verified function. | yeast, saccaromyces cerevisiae, s. cerevisiae | has parent organization: University of Toronto; Ontario; Canada | nlx_38480 | http://func.med.harvard.edu/yeast/ | SCR_010561 | SciCrunch Registry | Yeast Gene Predictive Functional Annotation Browser, FuncBase: Yeast Gene Predictive Functional Annotation Browser | 2026-10-31 12:20:34 | 0 | |||||||
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DaTo Resource Report Resource Website 10+ mentions |
DaTo (RRID:SCR_010280) | DaTo | data or information resource, database | A biological database and software tool catalog based on text mined and human annotated url mentions in PubMed abstracts. Data are annotated as to the author''''s country of origin and url status is checked. | metadata, catalog, text mining |
is related to: Cytoscape is related to: PubMed has parent organization: Zhejiang University; Zhejiang; China |
National Natural Science Foundation of China 30971743; National Natural Science Foundation of China 31371328 |
nlx_157296 | SCR_010280 | SciCrunch Registry | DA&TO - The Atlas of biology databases and tools, DAandTO, Da&To | 2026-10-31 12:20:45 | 12 | |||||||
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Nordic Genetic Resource Centre (Plants) Resource Report Resource Website |
Nordic Genetic Resource Centre (Plants) (RRID:SCR_010529) | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 18,2023. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_22485 | SCR_010529 | SciCrunch Registry | 2026-10-31 12:20:40 | 0 | |||||||||||
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CiteAb Resource Report Resource Website 50+ mentions |
CiteAb (RRID:SCR_009653) | CiteAb | data or information resource, database | Citation-ranked antibody search engine that provides a simple way to find antibodies that work. They use the number of citations as a transparent method to rank antibodies. Nobody can pay to be ranked higher. They are always looking for more commercial and academic antibodies to make CiteAb better. There is no charge to list. | antibody, search engine, citation |
is listed by: FORCE11 is related to: PubMed has parent organization: University of Bath; North East Somerset; United Kingdom |
Free, The community can contribute to this resource | nlx_156037 | http://www.force11.org/node/4768 | SCR_009653 | SciCrunch Registry | CiteAb: The Antibody Search Engine | 2026-10-31 12:20:44 | 55 | ||||||
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Project Tycho Resource Report Resource Website 1+ mentions |
Project Tycho (RRID:SCR_010489) | data or information resource, database | Database to advance the availability and use of public health data for science and policy making that includes data from all weekly notifiable disease reports for the United States dating back to 1888. Additional U.S. and international data will be released twice yearly. | population, disease, metadata standard, vaccination, public health data, health, incidence rate, death, statistics | has parent organization: University of Pittsburgh; Pennsylvania; USA | Smallpox, Polio, Measles, Mumps, Rubella, Hepatitis A, Whooping cough, Diphtheria, Etc. | Bill and Melinda Gates Foundation ; NIH |
PMID:24283231 PMID:24611167 |
Account required, Creative Commons Attribution License | nlx_157982, r3d100011948 | SCR_010489 | SciCrunch Registry | Project Tycho Data for Health | 2026-10-31 12:20:34 | 3 | |||||
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Pediatric Imaging Neurocognition and Genetics Resource Report Resource Website 50+ mentions |
Pediatric Imaging Neurocognition and Genetics (RRID:SCR_008953) | PING | data or information resource, database | A large multi-site pediatric MRI and genetics data resource to facilitate studies of the genomic landscape of the developing human brain. It includes information about the developing mental and emotional functions of the children to understand the genetic basis of individual differences in brain structure and connectivity, cognition, and personality. Investigators on the project are studying 1400 children between the ages of 3 and 20 years so that links between genetic variation and developing patterns of brain connectivity can be examined. Investigators interested in the effects of a particular gene will be able to search the database for any brain areas or connections between areas that differ as a function of variation in a particular gene, and also to determine if the genes appear to affect the course of brain development at some point during childhood. A data exploration tool has been created for mapping and analyzing MRI data sets collected for PING and related developmental studies. Approved investigators will be able to view raw image sets and derived 3D brain maps of MRI and DTI data, conduct hypothesis testing, and graph brain area measures as they change across the time course of development. PING Cores * Coordinating Core: Functions include project management, screening of participants and maintaining the database * Neuroimaging Core: applying a standardized high-resolution structural MRI protocol involving 3-D T1-weighted scans, a T2-weighted volume, and a set of diffusion-weighted scans with multiple b values and diffusion directions, scans to estimate MRI relaxation rates, and gradient echo EPI scans for resting state fMRI. Importantly, adaptive motion compensation, using ����??PROMO����??, a novel real-time motion correction algorithm will be used. Specific PING protocols for each scanner manufacturer: ** PING MRI Protocol - GE ** PING MRI Protocol - Philips ** PING MRI Protocol - Siemens * Assessment Core: Cognitive assessments for the PING project are conducted using the NIH Toolbox for Cognition. * Genomics Core: functions as a central repository for receipt of saliva samples collected for each study participant. Once received, samples are catalogued, maintained, and DNA is extracted using state-of-the-field laboratory techniques. Ultimately, genome-wide genotyping is performed on the extracted DNA using the Illumina Human660W-Quad BeadChip. PING involves 10 sites throughout the country including UCSD, University of Hawaii, Scripps Genomics, UCLA, UC Davis, Kennedy Krieger Institute/Johns Hopkins, Sacker Institute/Cornell University, University of Massachusetts, Massachusetts General Hospital/Harvard, and Yale. Families who may want to participate in the study, or others who want to know more about it, may email questions to ping (at) ucsd.edu. | pediatric, neuroimaging, genetics, child, early adult human, adolescent, genetic variant, magnetic resonance imaging, brain, gene, brain structure, connectivity, function, brain development, cognition, experimental protocol, saliva, dna, diffusion tensor imaging, image, genotype, dicom, imaging genomics, magnetic resonance, nifti, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NIH Toolbox - Assessment of Neurological and Behavioral Function has parent organization: University of California at San Diego; California; USA has parent organization: Multimodal Imaging Laboratory |
NIDA ; ARRA ; NICHD |
Data Use Agreement required. | nlx_151904 | http://www.nitrc.org/projects/ping | http://ping.chd.ucsd.edu/ | SCR_008953 | SciCrunch Registry | PING Study, Pediatric Imaging Neurocognition and Genetics (PING) | 2026-10-31 12:20:43 | 80 | ||||
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Search Orphan Drug Designations and Approvals Resource Report Resource Website 1+ mentions |
Search Orphan Drug Designations and Approvals (RRID:SCR_010256) | data or information resource, database | Database of Orphan Drug Product designations. Searches may be run by entering the product name, orphan designation, and dates. Results can be displayed as a condensed list, detailed list, or an Excel spreadsheet. | has parent organization: U.S. Food and Drug Administration | nlx_156908 | SCR_010256 | SciCrunch Registry | 2026-10-31 12:20:39 | 6 | |||||||||||
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Dangerous Ideas Resource Report Resource Website |
Dangerous Ideas (RRID:SCR_010531) | data or information resource, discussion, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE This is the website for a weekly social event called Dangerous Ideas, to promote more cross talk and cross pollination of ideas. There is a list of links to interesting new tools and technologies in the realm of computation and science. We'll be experimenting with webcasting this so others who can't physically join us can share in seeing what we think is cool. Its a completely open event-- anyone is welcome to join in, but should be prepared to present! | has parent organization: University of California at San Diego; California; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_22882 | SCR_010531 | SciCrunch Registry | 2026-10-31 12:20:33 | 0 | ||||||||||
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AnimalDrugsatFDA Resource Report Resource Website |
AnimalDrugsatFDA (RRID:SCR_010257) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database of approved veterinary drugs run by the FDA. | has parent organization: U.S. Food and Drug Administration | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156909 | SCR_010257 | SciCrunch Registry | animal drugs at FDA, animaldrugs@fda | 2026-10-31 12:20:34 | 0 | |||||||||
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Genetic Alterations in Cancer Resource Report Resource Website |
Genetic Alterations in Cancer (RRID:SCR_010533) | GAC | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. The NIEHS Genetic Alterations in Cancer (GAC) knowledgebase is a comprehensive collection of data compiled from studies reported in the published literature on genetic alterations in tumors associated with exposure to specific chemical, physical, or biological agents that can be linked to genes implicated in the development of cancers. GAC provides access to data from peer reviewed journals for hundreds of studies of gene mutations, loss of heterozygosity, and/or chromosome changes in tumors from humans, mice, or rats. Results are summarized in tables and graphic profiles that show the incidence (percent) of tumors with alterations in each gene that has been studied. Detailed data tables display results for each subject studied in the cited reference and the reference ID is hyperlinked to its PubMed abstract for more information. A mutation spectrum for individual genes and links to gene information from The Cancer Genome Anatomy Project and the Rat Genome Database are also provided. | has parent organization: National Institute of Environmental Health Sciences | PMID:16410370 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_23898 | http://www.niehs.nih.gov/research/resources/databases/gac/index.cfm | SCR_010533 | SciCrunch Registry | 2026-10-31 12:20:40 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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