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https://www.wpiinc.com/var-2273-constant-current-stimulus-isolator

Automated bipolar pulsing for zero net charge on biological preparations. Includes Constant current, Unipolar and bipolar stimulation modes, Built-in non-compliance alarm, Optically isolated input Standard TTL triggering, DC test mode. Powered by 9 V alkaline or rechargeable batteries.

Proper citation: WPI: Constant Current Stimulus Isolator (RRID:SCR_022660) Copy   

•   Source: SciCrunch Registry
  

https://divbrowse.ipk-gatersleben.de/

Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files.

Proper citation: DivBrowse (RRID:SCR_022780) Copy   

•   Source: SciCrunch Registry
  

https://www.fluidigm.com/products-services/instruments/biomark-hd

Automated, high performance PCR/qPCR system that uses microfluidics technology to process samples at nanoliter scale volumes for gene expression, genotyping, sample identification, copy number variation analysis and digital PCR. With wide range of integrated fluidic circuit (IFC) formats available, scaling from mid to high throughput on single system.

Proper citation: Standard BioTools: Biomark HD system (RRID:SCR_022658) Copy   

•   Source: SciCrunch Registry
  

https://github.com/ChristopherWilks/megadepth

Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.

Proper citation: Megadepth (RRID:SCR_022779) Copy   

•   Source: SciCrunch Registry
  

https://us.ohaus.com/en-US/Products/Balances-Scales/Portable-Balances/CS-Series/CS200P

OHAUS CS lightweight, portable, compact balance for use in laboratory, industrial, education and home use applications. CS offers great value without sacrificing accuracy for weighing jobs of 200g to 5000g.

Proper citation: OHAUS: CS200P Portable Balance (RRID:SCR_022536) Copy   

•   Source: SciCrunch Registry
  

https://www.npielectronic.com/product/pdes-module/

Pneumatic drug ejection. Used to apply ionic and non-ionic substances in small amounts. Locally precise application with microJECT pipette holder with built-in valve. Also available as 19″ stand alone device.

Proper citation: NPI: Pressure Application Module (RRID:SCR_022657) Copy   

•   Source: SciCrunch Registry
  

https://github.com/Whitlock-Group/HERBS

Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space.

Proper citation: Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) Copy   

•   Source: SciCrunch Registry
  

https://www.antibodysociety.org/the-airr-community/airr-data-commons/

Network of distributed repositories that adhere to standards set out by AIRR Community. This collection contains standards and repositories either created by the AIRR community or approved for use within AIRR community.

Proper citation: AIRR Data Commons (RRID:SCR_022597) Copy   

•   Source: SciCrunch Registry
  

https://www.u-toyama.ac.jp/

Japanese national university in Toyama Prefecture established in 1949. University of Toyama has three campuses, namely Gofuku, Sugitani, and Takaoka campuses.

Proper citation: University of Toyama; Toyama; Japan (RRID:SCR_022751) Copy   

•   Source: SciCrunch Registry
  

https://docs.airr-community.org/en/stable/miairr/introduction_miairr.html

Checklist of minimally required information that we recommend journals adopt, and that could form requirements for submission to public data repository. AIRR sequencing studies apply high throughput sequencing technologies to profile B cell receptors (BCRs) and T cell receptors (TCRs). Standards were developed by AIRR Community Minimal Standards Working Group.

Proper citation: Minimal information about Adaptive Immune Receptor Repertoires (RRID:SCR_022596) Copy   

•   Source: SciCrunch Registry
  

https://docs.airr-community.org/en/stable/swtools/airr_swtools_standard.html

AIRR Software Guidelines were created by AIRR Software Working Group to promote standards for AIRR software tools and resources in order to enable rigorous and reproducible immune repertoire research at largest scale possible.Established standards for software tools. Authors whose tools comply with this standard will, subject to ratification from AIRR Software WG, be permitted to advertise their tools as being AIRR compliant. Guidelines include compliance checklist, list of compliant tools, and recommended software evaluation data sets.

Proper citation: Adaptive Immune Receptor Repertoire Software Guidelines (RRID:SCR_022595) Copy   

•   Source: SciCrunch Registry
  

https://docs.airr-community.org/en/stable/datarep/rearrangements.html

Part of AIRR Data Model, defines annotations needed for rearrangements, which are sequences describing rearranged adaptive immune receptor chain (e.g., antibody heavy chain or TCR beta chain). Data for Rearrangement objects are stored as rows in tab delimited file and should be compatible with any TSV reader. Dataset is defined in this context as: TSV file, TSV with companion YAML file containing metadata, or directory containing multiple TSV files and YAML files.

Proper citation: Adaptive Immune Receptor Repertoire Rearrangement Schema (RRID:SCR_022592) Copy   

•   Source: SciCrunch Registry
  

https://www.ncbi.nlm.nih.gov/refseq/about/nonredundantproteins/

Non-redundant RefSeq protein records are currently provided for archaeal and bacterial RefSeq genomes, with exception of selected reference genomes, by NCBI prokaryotic genome annotation pipeline. This scope definition may change in the future to include additional RefSeq sub-kingdoms or other organism groups and some GenBank conceptual translation protein records may provide cross-links to RefSeq non-redundant proteins.

Proper citation: RefSeq non-redundant proteins (RRID:SCR_022748) Copy   

•   Source: SciCrunch Registry
  

https://www.artec3d.com/portable-3d-scanners/artec-eva

3D scanner for making quick, textured, and accurate 3D models of medium sized objects such as human bust, alloy wheel, or motorcycle exhaust system. Used for capturing objects of almost any kind, including objects with black and shiny surfaces.

Proper citation: Artec 3D: Eva Fast 3D scanner (RRID:SCR_022589) Copy   

•   Source: SciCrunch Registry
  

https://www.artec3d.com/portable-3d-scanners/artec-spider

3D scanner based on blue light technology. Precision instrument for CAD users and engineers. Used for capturing small objects or intricate details of large industrial objects in high resolution, with accuracy and brilliant color.

Proper citation: Artec 3D: Space Spider (RRID:SCR_022588) Copy   

•   Source: SciCrunch Registry
  

https://en.wikipedia.org/wiki/Surgisphere

American healthcare analytics company established in 2008. Originally textbook marketing company, it came under scrutiny in May 2020 after it had provided large datasets of COVID-19 patients which were subsequently found to be extremely unreliable. The questionable data was used in studies published in The Lancet and The New England Journal of Medicine in May 2020. On 15 June 2020, company website was taken offline.

Proper citation: Surgisphere (RRID:SCR_022759) Copy   

•   Source: SciCrunch Registry
  

http://hollywood.mit.edu/exonscan/

Software framework for modeling sequence motifs based on maximum entropy principle.

Proper citation: ExonScan Web Server (RRID:SCR_022516) Copy   

•   Source: SciCrunch Registry
  

https://github.com/SGDDNB/ShinyCell

Software R package to create interactive Shiny based web applications to visualise single cell data via visualising cell information and/or gene expression on reduced dimensions e.g. UMAP, visualising coexpression of two genes on reduced dimensions, visualising distribution of continuous cell information e.g. nUMI / module scores using violin plots / box plots, visualising composition of different clusters / groups of cells using proportion plots and visualising expression of multiple genes using bubbleplots / heatmap.Shiny Interactive Web Apps for Single-Cell Data.

Proper citation: ShinyCell (RRID:SCR_022756) Copy   

•   Source: SciCrunch Registry
  

https://www.antibodysociety.org/the-airr-community/

Research driven group that is organizing and coordinating stakeholders in use of next generation sequencing technologies to study antibody/B-cell and T-cell receptor repertoires. Develops and promotes standards and recommendations for obtaining, analyzing, curating and comparing/sharing AIRR-seq datasets;using and validating tools for analyzing AIRR-seq data;relating AIRR-seq datasets to other “big data” sets, such as microarray, flow cytometric, and MiSeq and single-cell gene-expression data; legal and ethical issues involving use and sharing of AIRR-seq data sets derived from human sources.

Proper citation: AIRR Community (RRID:SCR_022598) Copy   

•   Source: SciCrunch Registry
  

https://CRAN.R-project.org/package=ComplexUpset

Software R package for visualization of intersecting sets. Used for quantitative analysis of sets, their intersections, and aggregates of intersections. Visualizes set intersections in matrix layout and introduces aggregates based on groupings and queries.

Proper citation: ComplexUpset (RRID:SCR_022752) Copy   

•   Source: SciCrunch Registry