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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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oPOSSUM Resource Report Resource Website 100+ mentions |
oPOSSUM (RRID:SCR_010884) | oPOSSUM | analysis service resource, data analysis service, production service resource, service resource, software resource | A web-based system for the detection of over-represented conserved transcription factor binding sites and binding site combinations in sets of genes or sequences. | transcription factor binding site | is listed by: OMICtools | PMID:22973536 PMID:17576675 PMID:15933209 |
Acknowledgement requested | OMICS_00488 | SCR_010884 | oPOSSUM-3 | 2026-08-21 12:39:28 | 101 | ||||||
|
ArrayAnalysis.org Resource Report Resource Website 50+ mentions |
ArrayAnalysis.org (RRID:SCR_010932) | ArrayAnalysis.org | analysis service resource, data analysis service, production service resource, service resource, software resource | Tools for microarray quality control and pre-processing. | r, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:23620278 | Acknowledgement requested | OMICS_00742, biotools:arrayanalysis.org | https://bio.tools/arrayanalysis.org | SCR_010932 | ArrayAnalysis | 2026-08-21 12:39:26 | 72 | |||||
|
BWA Resource Report Resource Website 1000+ mentions |
BWA (RRID:SCR_010910) | BWA | alignment software, data analysis software, data processing software, image analysis software, sequence analysis software, software application, software resource | Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp. | sequence, alignment, reference, genome, human, short, long, read, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: shovill is related to: Proovread is related to: BWA-MEM2 has parent organization: SourceForge is required by: RelocaTE |
PMID:19451168 PMID:20080505 DOI:10.1093/bioinformatics/btp324 |
Free, Available for download, Freely available | SCR_015853, biotools:bwa-sw, OMICS_00654 | https://sourceforge.net/projects/bio-bwa/files/, https://bio.tools/bwa-sw, https://sources.debian.org/src/bwa/ | SCR_010910 | Burrows-Wheeler Aligner (BWA), Burrows-Wheeler Aligner | 2026-08-21 12:39:26 | 2638 | |||||
|
HOMER Resource Report Resource Website 5000+ mentions |
HOMER (RRID:SCR_010881) | HOMER | data analysis software, data processing software, sequence analysis software, software application, software resource | Software tools for Motif Discovery and next-gen sequencing analysis. Used for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets. Collection of command line programs for unix style operating systems written in Perl and C++. | motif, discovery, next, generation, sequencing, analysis, genomic, data |
is listed by: OMICtools is related to: findMotif.pl has parent organization: University of California at San Diego; California; USA |
Foundation Leducq Transatlantic Network Grant ; NCI CA52599; NIDDK DK063491; NIGMS P50 GM081892; NIH HC088093; NURSA consortium grant |
PMID:20513432 | OMICS_00483 | http://biowhat.ucsd.edu/homer/index.html | SCR_010881 | HOMER, Hypergeometric Optimization of Motif EnRichment, Homer, Homer v4.5 | 2026-08-21 12:39:28 | 5929 | |||||
|
Carleton University; Ontario; Canada Resource Report Resource Website |
Carleton University; Ontario; Canada (RRID:SCR_011136) | university | Public comprehensive university in Ottawa, Ontario, Canada. Founded in 1942 as Carleton College, a private, non-denominational evening college to serve returning World War II. |
is parent organization of: Aptamer Base is parent organization of: An Extended and Parallel version of Clustal is parent organization of: Carleton University Tissue Engineering and Applied Materials Hub Core Facility |
Crossref funder ID:100008095, grid.34428.39, Wikidata:Q1041737, nlx_45745, ISNI:0000 0004 1936 893X | https://ror.org/02qtvee93 | SCR_011136 | 2026-08-21 12:39:10 | 0 | ||||||||||
|
Medical Research Council Resource Report Resource Website 50+ mentions |
Medical Research Council (RRID:SCR_011018) | MRC, UK MRC | institution | The Medical Research Council is a publicly-funded organization dedicated to improving human health. We support research across the entire spectrum of medical sciences, in universities and hospitals, in our own units, centers and institutes in the UK, and in our units in Africa. | is related to: EMIF | Wikidata: Q746879, Crossref funder ID: 501100000265, nlx_inv_1005080, ISNI: 122478951, grid.14105.31 | https://ror.org/03x94j517 | SCR_011018 | UK Medical Research Council, British Medical Research Council | 2026-08-21 12:39:08 | 55 | ||||||||
|
Catholic University of Louvain; Louvain-la-Neuve; Belgium Resource Report Resource Website 1+ mentions |
Catholic University of Louvain; Louvain-la-Neuve; Belgium (RRID:SCR_011141) | UCL | university | Belgium's largest French speaking university. |
is related to: Pharma-Planta Consortium is related to: PRECISESADS is parent organization of: Catholic University of Louvain Institute of Experimental and Clinical Research Imaging Platform Core Facility is parent organization of: Catholic University of Louvain Institute of Experimental and Clinical Research Flow Cytomerty Platform Core Facility is parent organization of: Catholic University of Louvain Genomics platform Core Facility |
grid.7942.8, Wikidata:Q378134, ISNI:0000 0001 2294 713X, nlx_143960, Crossref funder ID:501100008135 | https://ror.org/02495e989 | http://www.uclouvain.be/en-index.html | SCR_011141 | Catholic University of Louvain, Universit� catholique de Louvain, Universite catholique de Louvain | 2026-08-21 12:39:10 | 2 | |||||||
|
Mouse Clinical Institute; Alsace; France Resource Report Resource Website 10+ mentions |
Mouse Clinical Institute; Alsace; France (RRID:SCR_011021) | MCI, ICS | institution | Research infrastructure for generation of new mouse models,being therefore the most important transgenic mouse production unit in France. | is related to: AgedBrainSYSBIO | ISNI: 0000 0004 0404 8159, nlx_158126, grid.452426.3 | https://ror.org/03cjqqq10 | SCR_011021 | Mouse Clinical Institute, Institut Clinique de la Souris, Institut Clinique de la Souris; Alsace; France | 2026-08-21 12:39:27 | 12 | ||||||||
|
Central University of the Caribbean; Puerto Rico; USA Resource Report Resource Website |
Central University of the Caribbean; Puerto Rico; USA (RRID:SCR_011145) | UCC | university | Private university in Bayamón, Puerto Rico that focuses on graduate studies and professional certifications in the health sciences. |
is parent organization of: UCC Common Instrumentation Area and Services is parent organization of: UCC Behavioral Testing Facility is parent organization of: UCC Biomedical Proteomic Facility is parent organization of: UCC Data Management and Statistical Research Support Unit is parent organization of: UCC HIV and Substance of Abuse Laboratory Core is parent organization of: UCC Immunocytochemistry Laboratory is parent organization of: UCC Neuronal Glia Culture Facility is parent organization of: UCC Optical Imaging Facility is parent organization of: UCC Protein and Nucleic Acid Core Facility is parent organization of: UCC Transmission Electron Microscopy Laboratory |
grid.253922.d, Wikidata:Q5061968, nlx_156113, ISNI:0000 0000 9699 6324 | https://ror.org/01rpmzy83 | SCR_011145 | Universidad Central del Caribe, Central University of the Caribbean | 2026-08-21 12:39:32 | 0 | ||||||||
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UNC Microarray Database Resource Report Resource Website 10+ mentions |
UNC Microarray Database (RRID:SCR_010979) | UNC MD, UNCMD | data or information resource, data repository, database, service resource, storage service resource | Database for microarray data storage, retrieval, analysis, and visualization. | microarray, FASEB list |
is listed by: OMICtools has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Account required, The community can contribute to this resource | OMICS_00872 | SCR_010979 | UNC-Chapel Hill Microarray Database | 2026-08-21 12:39:28 | 33 | |||||||
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Baylor University; Texas; USA Resource Report Resource Website 1+ mentions |
Baylor University; Texas; USA (RRID:SCR_011029) | university | Private Baptist research university in Waco, Texas. Baylor was chartered in 1845 by the last Congress of the Republic of Texas. |
is parent organization of: Baylor University Department of Psychology and Neuroscience is parent organization of: Baylor College of Medicine - Shaw Laboratory is parent organization of: Genboree Discovery System is parent organization of: National Center for Macromolecular Imaging is parent organization of: Sea Urchin Genome Project is parent organization of: Sea Urchin Genome Project is parent organization of: Tribolium castaneum Genome Project is parent organization of: Honey Bee Genome Project is parent organization of: EMDataResource.org is parent organization of: BCM Department of Neuroscience Andreas Tolias Lab is parent organization of: HapMap 3 and ENCODE 3 is parent organization of: SimRare is parent organization of: PhenoMan is parent organization of: Human Epigenome Atlas is parent organization of: Baylor College of Medicine; Department of Pharmacology is parent organization of: Baylor College of Medicine Department of Neuroscience is parent organization of: Mouse Mutagenesis Center for Developmental Defects is parent organization of: Gene Atlas is parent organization of: Dictyostelium discoideum genome database is parent organization of: Bovine Genome Project is parent organization of: BCM ET is parent organization of: Atlas2 is parent organization of: Genboree Workbench is parent organization of: BCM Analyte Center is parent organization of: BCM Circulating Tumor Cells Core Facility is parent organization of: Baylor College of Medicine Human Genome Sequencing Center is parent organization of: Mouse Genome Project is parent organization of: Dictyostelium discoideum genome database |
ISNI:0000 0001 2111 2894, Crossref funder ID:100007492, nlx_50627, grid.252890.4, Wikidata:Q812573 | https://ror.org/005781934 | SCR_011029 | 2026-08-21 12:39:27 | 2 | ||||||||||
|
Emory University Labs and Facilities Resource Report Resource Website |
Emory University Labs and Facilities (RRID:SCR_011031) | Emory Labs and Facilities, Emory Labs & Facilities | access service resource, core facility, data or information resource, portal, service resource | THIS RESOURCE IS NO LONGER IN SERVICE,documented on February 3rd,2022. |
is listed by: ScienceExchange has parent organization: Emory University; Georgia; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_962 | SCR_011031 | Emory University Labs & Facilities | 2026-08-21 12:39:08 | 0 | ||||||||
|
Bioinformatics Institute; Singapore; Singapore Resource Report Resource Website |
Bioinformatics Institute; Singapore; Singapore (RRID:SCR_011117) | BII | institution | The Bioinformatics Institute (BII) was set up by the Agency for Science and Technology Research (A*STAR) in July 2001; it was re-launched with a strong scientific program in the autumn months of 2007. Located in the Biopolis, BII is conceived as the computational biology research and postgraduate training institute as well as a national resource centre in bioinformatics within the Biomedical Research Council (BMRC) of A*STAR. The BII focuses on theoretical approaches aimed at understanding biomolecular mechanisms that underlie biological phenomena, the development of computational methods to support this discovery process, and experimental verification of predicted molecular and cellular functions of genes and proteins with biochemical methods. Together with the BMRC, A*STAR research institutes and multinational R&D organizations in the Biopolis, the BII is situated in a conducive environment for exchange of scientific knowledge and friendly interaction that will prompt greater collaborations, and position the Biopolis as a notable biomedical R&D hub in Asia and in the world. |
has parent organization: Agency for Science Technology and Research is parent organization of: Cube-DB |
Crossref funder ID: 501100001441, ISNI: 0000 0000 9351 8132, grid.418325.9, nlx_149433 | https://ror.org/044w3nw43 | SCR_011117 | Bioinformatics Institute | 2026-08-21 12:39:28 | 0 | ||||||||
|
Biotechnology and Biological Sciences Research Council Resource Report Resource Website 100+ mentions |
Biotechnology and Biological Sciences Research Council (RRID:SCR_011118) | BBSRC | institution | The UK''s leading funding agency for academic research and training in the non-clinical life sciences. | nlx_inv_1005015, ISNI: 0000 0001 2189 3037, grid.418100.c, Crossref funder ID: 501100000268, Wikidata: Q2904256 | https://ror.org/00cwqg982 | SCR_011118 | 2026-08-21 12:39:09 | 392 | ||||||||||
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Albany College of Pharmacy and Health Sciences; New York; USA Resource Report Resource Website |
Albany College of Pharmacy and Health Sciences; New York; USA (RRID:SCR_011088) | ACPHS | university | Albany College of Pharmacy and Health Sciences is committed to the advancement of health, with an array of degree programs designed to help students succeed in pharmacy and other health related fields. There are nearly 1,600 students enrolled at ACPHS and more than 100 full- and part-time faculty. The College''s main campus is located in Albany, New York; its satellite campus is in Colchester, Vermont. The College offers a Doctor of Pharmacy (Pharm.D.) program; four-year bachelor''s degrees in Pharmaceutical Sciences, Health and Human Sciences and Biomedical Technology; and a certificate program in Cytotechnology. Opportunities exist for students within each of these programs to work side-by-side with faculty on groundbreaking research in areas such as cancer, infectious disease and obesity. These experiences, along with access to resources such as the cutting edge Pharmaceutical Research Institute, are rarely afforded to undergraduates at most schools and are part of what distinguishes ACPHS from other colleges and universities. ACPHS also offers master''s degree programs in Pharmaceutical Sciences, Health Outcomes Research and Pharmacy Administration. In addition, students may pursue joint degrees in the fields of medicine, law and business through cooperative agreements with area institutions. Graduates of the College are prepared for a range of careers such as: biochemist, clinical laboratory scientist, consumer safety officer, drug information specialist, environmental toxicologist, health policy analyst, hospital administrator, pharmacist, physician, physician assistant and research scientist. The College is not only focused on the success of its own students, but also students throughout the region. ACPHS operates several programs for underserved youth in the area, each of which is designed to help them improve self confidence, develop new interests and skills, and inspire them to one day attend college themselves. | nlx_83739, Wikidata:Q2830804, grid.413555.3, ISNI:0000 0000 8718 587X | https://ror.org/014hfaw95 | SCR_011088 | ACPHS | 2026-08-21 12:39:09 | 0 | |||||||||
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Indiana University School of Medicine Physiological Proteomics Core Facility Resource Report Resource Website |
Indiana University School of Medicine Physiological Proteomics Core Facility (RRID:SCR_011005) | IUSM PPCF, PPCF | access service resource, availability annotation standard, core facility, data or information resource, narrative resource, nif annotation standard, service resource, standard specification, this resource is no longer in service | THIS RESOURCE IS NO LONGER IN SERVCE, documented January 23, 2019. Facility enables researchers to identify and quantify proteins in simple or complex samples and characterize protein post-translational modifications or conjugates. PPCF provides the following mass spectrometry-based proteomics services: Protein Identification Protein Quantification Differential Protein Expression Analysis Protein Post-translational Modification Analysis Bioinformatics and Pathway Analysis Biomarker Discovery Please note, a set up fee is applied when the number of samples is less than 10. | physiological, proteomics, mass spectrometry, protein post-translational, modification analysis, |
is listed by: ScienceExchange is related to: Indiana University Labs and Facilities has parent organization: Indiana University School of Medicine; Indiana; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_9347 | SCR_011005 | IUSM, PPCF, Physiological Proteomics Core Facility, Indiana University School of Medicine | 2026-08-21 12:39:08 | 0 | |||||||
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Butler University; College of Pharmacy & Health Sciences Resource Report Resource Website |
Butler University; College of Pharmacy & Health Sciences (RRID:SCR_011126) | data or information resource, department portal, organization portal, portal | The College of Pharmacy and Health Sciences strives to provide effective educational experiences in the health sciences. By so doing, the College facilitates the development of life-long learners with a liberal arts foundation who are able to serve society as dedicated, competent health professionals and community leaders. The Butler University College of Pharmacy and Health Sciences is a member of the American Association of Colleges of Pharmacy and is accredited by the Accreditation Council for Pharmacy Education. By completion of the doctor of pharmacy curriculum of the College of Pharmacy and Health Sciences, its graduates fulfill the educational requirements for examination and licensure as pharmacists in every state in the nation. Degrees offered: -Doctor of Pharmacy -Master of Physician Assistant Studies -Master of Science in Pharmaceutical Sciences -Doctor of Pharmacy/Master of Business Administration Dual Degree Curriculum | has parent organization: Butler University; Indiana; USA | nlx_10840 | http://www.butler.edu/cophs/?pg=1066 | SCR_011126 | Butler COPHS, Butler University; College of Pharmacy and Health Sciences, COPHS | 2026-08-21 12:39:32 | 0 | |||||||||
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California Polytechnic State University; California; USA Resource Report Resource Website |
California Polytechnic State University; California; USA (RRID:SCR_011128) | Cal Poly | university | Nationally ranked, four-year, comprehensive public university located in San Luis Obispo, California. | is parent organization of: IPython | nlx_153940, Wikidata:Q1026846, Crossref funder ID:100008507, ISNI:000000012222461X, grid.253547.2 | https://ror.org/001gpfp45 | SCR_011128 | California Polytechnic State University | 2026-08-21 12:39:28 | 0 | ||||||||
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California State University Channel Islands; California; USA Resource Report Resource Website |
California State University Channel Islands; California; USA (RRID:SCR_011129) | CI, CSUCI | university | Public university in Ventura County, California. CSUCI opened in 2002 as the 23rd campus in the California State University system. | is parent organization of: CSU Channel Islands Labs and Facilities | grid.253554.0, Wikidata:Q1026905, Crossref funder ID:100009973, ISNI:0000 0000 9777 9241, nlx_153969 | https://ror.org/04v097707 | SCR_011129 | CSU Channel Islands, California State University Channel Islands | 2026-08-21 12:39:10 | 0 | ||||||||
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Argonne National Laboratory Resource Report Resource Website 1+ mentions |
Argonne National Laboratory (RRID:SCR_011095) | Argonne | institution | For six decades, the U.S. Department of Energy''s (DOE''s) Argonne National Laboratory has excelled in conducting scientific research in support of a secure future for the nation. From Argonne''s inception, the University of Chicago has managed and operated the laboratorya laboratory that has become a scientific leader for DOE and the country. Achievements and honors earned by Argonne researchers include three Nobel Prizes, 90 R&D 100 awards, 700 national and international awards and honors, 750 patents and the start of over 30 small businesses. Argonne National Laboratory, one of the U.S. Department of Energy''s oldest and largest national laboratories for science and engineering research, employs roughly 3,200 employees, including about 1,000 scientists and engineers, three-quarters of whom hold doctoral degrees. Argonne''s mission is to apply a unique mix of world-class science, engineering and user facilities to deliver innovative research and technologies. We create new knowledge that addresses the most important scientific and societal needs of our nation. Research at Argonne centers around three principal areas: *Energy ** Energy Storage: Argonne develops transformational energy storage systems that enable and enhance electric-drive vehicles and a green-energy grid through electrical energy storage development, prototype and manufacturing process engineering, stationary storage and grid management, and electric transportation systems. ** Alternative Energy and Efficiency: Argonne is developing the next generation of alternative energy sources to promote energy independence through improved chemical fuels, advanced biofuels, and solar energy systems, as well as through the optimization of fuel and engine dynamics. ** Nuclear Energy: Argonne develops advanced reactor and fuel cycle systems including fast reactor and fuel cycle technologies, advanced modeling and simulation methods, and innovative nuclear energy systems to enable the safe and sustainable generation of nuclear energy. * Biological and Environmental Systems: Argonne produces integrated molecular-scale, hydrological, economic and social computational models to enable regionally focused ecological and climate assessments through metagenome analysis, protein discovery, regional climate prediction and integrated climate, energy and economic discovery. * National Security: Argonne provides critical security technologies that prevent and mitigate events with potential for mass disruption or destruction through the nonproliferation and forensics of weapons of mass destruction, decision sciences, new sensors and materials, and cyber security. |
has parent organization: University of Chicago; Illinois; USA has parent organization: United States Department of Energy is parent organization of: GeneWays is parent organization of: BioCAT is parent organization of: MG-RAST is parent organization of: SENTRA: a database of prokaryotic signal transduction proteins is parent organization of: Argonne National Laboratory Labs and Facilities is parent organization of: Globus Genomics is parent organization of: SEED is parent organization of: Globus |
nlx_55742, Crossref funder ID: 100006224, Wikidata: Q649120, ISNI: 0000 0001 1939 4845, grid.187073.a | https://ror.org/05gvnxz63 | SCR_011095 | 2026-08-21 12:39:28 | 2 |
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