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https://ptc.bocsci.com/services/protac-diastereomer-design-negative-control.html

Service to design PROTAC diastereomer to meet new drug discovery goals.

Proper citation: BOC Sciences PROTAC diastereomer Design negative control Service Resource (RRID:SCR_022249) Copy   

•   Source: SciCrunch Registry
  

https://ptc.bocsci.com/services/protac-design-based-on-bioinformatics.html

Provides PROTAC design based on bioinformatics services to customers to meet new drug discovery goals. Used for analysis of large scale multi group data to discover potential drug targets based on biological network characteristics, multi gene chip, proteome, metabolome data.

Proper citation: BOC Sciences PROTAC Design based on Bioinformatics (RRID:SCR_022248) Copy   

•   Source: SciCrunch Registry
  

https://commons.cri.uchicago.edu/pcdc/

PCDC brings together clinical, genomic, and imaging data from institutions around the world to transform pediatric cancer research and outcomes. Headquartered at University of Chicago, PCDC works with international leaders in pediatric cancers and National Cancer Institute to develop and apply uniform data standards that facilitate collection, combination, and analysis of data from many different sources. PCDC Consortium developes common core data dictionary and common governance structure spanning pediatric cancers neuroblastoma, soft tissue sarcoma, acute myeloid leukemia, acute lymphoblastic leukemia, germ cell tumors, bone tumors, and Hodgkin lymphoma to enable innovative cross disease research as well as set standard for future cancer data commons endeavors.

Proper citation: Pediatric Cancer Data Commons (RRID:SCR_022369) Copy   

•   Source: SciCrunch Registry
  

https://ptc.bocsci.com/services/linker-design-and-optimization-services.html

Provides Linker Design and Optimization services to meet new drug discovery goals.

Proper citation: BOC Sciences Linker Design and Optimization Services Service Resource (RRID:SCR_022247) Copy   

•   Source: SciCrunch Registry
  

https://bioconductor.org/packages/release/bioc/html/multiHiCcompare.html

Software package for removing biases across multiple Hi-C datasets. Properly handles Hi-C-specific decay of chromatin interaction frequencies with increasing distance between interacting regions.

Proper citation: multiHiCcompare (RRID:SCR_022368) Copy   

•   Source: SciCrunch Registry
  

http://sanger-pathogens.github.io/snp-sites/

Software tool to find SNP sites from multi-FASTA alignment file. Can output results in multiple formats for downstream analysis.

Proper citation: SNP-sites (RRID:SCR_022265) Copy   

•   Source: SciCrunch Registry
  

https://www.zeiss.com/microscopy/us/products/confocal-microscopes/lsm-900-with-airyscan-2.html

Laser scanning confocal microscope for multiplex imaging and analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Zeiss: LSM 900 with Airyscan 2 (RRID:SCR_022263) Copy   

•   Source: SciCrunch Registry
  

https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022262.pdf

System for efficient transfection of a variety of hard-to transfect cell lines and primary cells. Using certified aluminium electrode cuvettes this single cuvette system is capable of transfecting various substrates in a low throughput format.

Proper citation: Lonza: Nucleofector 2b Device (RRID:SCR_022262) Copy   

•   Source: SciCrunch Registry
  

https://pmbb.med.upenn.edu/

BioBank supports researchers by providing centralized access to large number of annotated blood and tissue samples.

Proper citation: University of Pennsylvania Perelman School of Medicine Penn Medicine BioBank Core Facility (RRID:SCR_022415) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/ezcalcium/

Software package for MATLAB that makes motion correction, segmentation, signal extraction and dimension reduction, analysis, and visualization of calcium imaging data easy to implement. Open source toolbox for analysis of calcium imaging data.

Proper citation: EZcalcium (RRID:SCR_022354) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/guppy/

Software Python toolbox that makes fiber photometry data analysis intuitive and light on programming.Used to measure neural activity of freely behaving animals.

Proper citation: GuPPy (RRID:SCR_022353) Copy   

•   Source: SciCrunch Registry
  

https://github.com/crtwomey/paws

Statistical software platform for automated scoring of pain in mice.Software R package takes paw trajectory data in response to stimulus and provides automated scoring of pain.

Proper citation: Pain Assessment at Withdrawal Speeds (RRID:SCR_022350) Copy   

•   Source: SciCrunch Registry
  

https://orthovenn2.bioinfotoolkits.net/home

Web server for whole genome comparison and annotation of orthologous clusters across multiple species.Works on any operating system with modern browser and Javascript enabled. Used to identify orthologous gene clusters and supports user define species to upload customized protein sequences. Interactive graphic tool which provides Venn diagram view for comparing multiple species protein sequences.

Proper citation: OrthoVenn2 (RRID:SCR_022504) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/neuroethology-tools/

Software Python pipeline for automated detection, pose estimation, and behavior classification in socially interacting mice.Used for pose estimation and behavior quantification in pairs of freely behaving mice.

Proper citation: Mouse Action Recognition System (RRID:SCR_022347) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/pavca/

Project related to tracking behavior. Used to identify subgroups of individuals that differentially attribute incentive value to food cue. Includes apparatus for studying Pavlovian conditioned approach behavior. Customized rat PavCA chambers are constructed based on modular devices purchased from Med-Associates. Code used to operate equipment and collect data was written using Med-Associates’ MEDSTATE programming language. This program is then loaded into Med-PC V operating program, also created by Med-Associates.

Proper citation: PavCA project (RRID:SCR_022508) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/sipec/

Software pipeline for video analysis. Deep learning Swiss knife for behavioral data analysis.Performs segmentation, identification, pose-estimation and classification of complex behaviour. Used for analysis of behavior of multiple animals in complex environments.

Proper citation: SIPEC (RRID:SCR_022364) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/timed-pressure-control/

System uses Arduino microcontroller to control relay module that operates solenoid valve which all sit in 3D printed housing. Solenoid works in conjunction with flowmeter regulator to allow for controlled flow of pressurized air into target. Timing of distensions is controlled via either custom Python based UI, or by triggered TTL pulse.Timed pressure control hardware and software used for delivery of air mediated distensions in animal models.

Proper citation: Timed pressure control hardware and software for delivery of air mediated distensions in animal models (RRID:SCR_022363) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/mmop/

Software tool as multi subject keypoint detection library for real time pose estimation.Used to track behavior of monkeys in natural environments, without disrupting their typical pattern of behavior. Deep learning software system for body, face, hands, and foot estimation in monkeys.

Proper citation: OpenPose (RRID:SCR_022362) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/trex/

Open source animal tracking software tool. Used to visually track movement of multiple animals at once.

Proper citation: TRex (RRID:SCR_022361) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/dlstream/

Software tool enables closed loop behavioral experiments using deep learning based markerless, real time posture detection.Closed loop behavioral experiment toolkit using pose estimation of body parts.

Proper citation: DLStream (RRID:SCR_022359) Copy   

•   Source: SciCrunch Registry