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https://www.microbialtec.com/pelodictyon-cultivation.html

Service for Pelodictyon cultivation.

Proper citation: Creative Biogene Pelodictyon Cultivation Service Resource (RRID:SCR_022244) Copy   

•   Source: SciCrunch Registry
  

https://www.mitochondriasci.com/biomarkers-and-therapeutic-targets.html

Creative Biogene service for discovery of disease specific proteins associated with mitochondrial epigenetic products, which can be used as molecular targets for new drug design and provide molecular markers for early diagnosis of diseases.

Proper citation: Creative Biogene Mitochondrial Biomarkers and Therapeutic Targets Service Resource (RRID:SCR_022240) Copy   

•   Source: SciCrunch Registry
  

https://github.com/zburkett/VoICE

Software that groups vocal elements of birdsong by creating a high dimensionality dataset through scoring spectral similarity between vocalizations.

Proper citation: Vocal Inventory Clustering Engine (VoICE) (RRID:SCR_016004) Copy   

•   Source: SciCrunch Registry
  

https://gitlab.com/alexmascension/triku

Software tool as feature selection method based on nearest neighbors for single-cell data.

Proper citation: triku (RRID:SCR_020977) Copy   

•   Source: SciCrunch Registry
  

https://www.mitochondriasci.com/physiological-and-pathological-modifications.html

Provides multi species mitochondrial epigenetic analysis and customizes appropriate research route. Providies services on epigenetic characteristics of mitochondria under different physiological and pathological conditions.

Proper citation: Creative Biogene Mitochondrial Physiological and Pathological Modifications Service Resource (RRID:SCR_022239) Copy   

•   Source: SciCrunch Registry
  

https://singularityhub.github.io/sregistry

Web application and registry for institutional deployment of Singularity containers.

Proper citation: Singularity Registry (RRID:SCR_016249) Copy   

•   Source: SciCrunch Registry
  

http://hpc-bioinformatics.cineca.it/stress_mice/

Sapienza University of Rome and Cineca consortium portal. Used for analyzing published RNAseq transcriptomes obtained from brain of mice exposed to different kinds of stress protocols, to generate database of stress related differentially expressed genes and to identify factors contributing to vulnerability or resistance to stress. Allows to query database of RNAseq data.

Proper citation: Stress Mice Portal (RRID:SCR_017572) Copy   

•   Source: SciCrunch Registry
  

https://github.com/lkmklsmn/DrivAER

Software tool as method for identification of driving transcriptional programs based on AutoEncoder derived Relevance scores. Infers relevance scores for transcriptional programs with respect to specified outcomes of interest in single-cell RNA sequencing data, such as psuedotemporal ordering or disease status.Used for manifold interpretation in scRNA-seq data.

Proper citation: DrivAER (RRID:SCR_019076) Copy   

•   Source: SciCrunch Registry
  

https://github.com/wilkinsonlab/epigenomics_pipeline

Software tool as epigenomics analysis pipeline for analysis of ChIP-Seq and RNA-Seq data using Docker images containing Galaxy and Jupyter.

Proper citation: Epigenomics Workflow on Galaxy and Jupyter (RRID:SCR_017544) Copy   

•   Source: SciCrunch Registry
  

https://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/index.cgi#bewith

Software tool for discovering relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions.

Proper citation: BeWith (RRID:SCR_016573) Copy   

•   Source: SciCrunch Registry
  

http://www.imgt.org/HighV-QUEST/home.action

Next generation B and T cell sequence alignment and characterization online surface by IMGT. Web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing.

Proper citation: IMGT HighV-QUEST (RRID:SCR_018196) Copy   

•   Source: SciCrunch Registry
  

https://gat.readthedocs.io/en/latest/

Software tool as simulation framework for testing association of genomic intervals. Used for estimating significance of overlap between multiple sets of genomic intervals. Estimates statistical significance based on simulation and controls for multiple tests using false discovery rate.

Proper citation: Genomic Association Tester (RRID:SCR_020949) Copy   

•   Source: SciCrunch Registry
  

https://cran.r-project.org/web/packages/factoextra/index.html

R package from CRAN to extract and visualize the results of multivariate data analysis.

Proper citation: factoextra (RRID:SCR_016692) Copy   

•   Source: SciCrunch Registry
  

https://pm4ngs.readthedocs.io/

Software tool to generate standard organizational structure for Next Generation Sequencing data analysis. Includes directory structure for project, several Jupyter notebooks for data management and CWL workflows for pipeline execution.

Proper citation: PM4NGS (RRID:SCR_019164) Copy   

•   Source: SciCrunch Registry
  

https://www.creative-peptides.com/services/formulation-development.html

Service to determine optimal dosage form, composition and manufacturing route for pharmaceutical products.

Proper citation: Creative Peptides: Formulation Development Service Resource (RRID:SCR_022223) Copy   

•   Source: SciCrunch Registry
  

https://www.creative-peptides.com/services/peptide-lead-optimization.html

Provides optimized one stop solution for peptide lead drugs. Used to improve upon lead molecule that demonstrates activity at target of interest by optimizing its potency or selectivity at target and its absorption, distribution, metabolism and elimination properties.

Proper citation: Creative Peptides: Peptide Lead Optimization Service Resource (RRID:SCR_022222) Copy   

•   Source: SciCrunch Registry
  

https://www.creative-peptides.com/services/peptide-drug-bioconjugations.html

Custom peptide synthesis, modification, and conjugation services involve chemical modification of peptide at highly specific sites. This allows for attachment of drugs or bioactive molecules though variety of coupling techniques.

Proper citation: Creative Peptides Peptide Drug Bioconjugations Service Resource (RRID:SCR_022221) Copy   

•   Source: SciCrunch Registry
  

https://github.com/lufuhao/Gsnap2Augustus

Software tool to generate hints for Augustus in ab initio gene prediction using 2 step mapping by Gsnap.

Proper citation: Gsnap2Augustus (RRID:SCR_017555) Copy   

•   Source: SciCrunch Registry
  

http://neomorph.salk.edu/omb/

Viewer for DNA Methylation Atlas of Mouse Brain at Single Cell Resolution. Browser to interactively explore single cell methylome dataset including exploration of methylation diversity of one gene at single-cell or cell-type level, exploration of cell type composition of adult mouse brain dissection regions and anatomical structures, explorartion of spatial distribution and methylation signature genes of one cell type.

Proper citation: Brain Cell Methylation Viewer (RRID:SCR_020954) Copy   

•   Source: SciCrunch Registry
  

https://www.creative-peptides.com/services/total-peptide-library-construction-technology.html

Service uses bioinformatics methods to compress peptide information, which can integrate information of multiple peptide into one peptide. Provides collection of small peptide of specific length and different sequences, which includes permutation and combination of various amino acid sequences in short peptide of this length.Total peptide library for new drug research and development.

Proper citation: Creative Peptides Total Peptide Library Construction Service Resource (RRID:SCR_022219) Copy   

•   Source: SciCrunch Registry