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https://www.ionpath.com/

Pioneer in high definition spatial proteomics, tissue imaging and analysis to accelerate medical discovery and improve human health. With MIBI technology and expertise of pathology and data science teams, Ionpath provides actionable insights to translational and clinical researchers at leading pharmaceutical, biotechnology, and research organizations in immuno-oncology, immunology, neuroscience, and infectious disease research.

Proper citation: Ionpath (RRID:SCR_023605) Copy   

•   Source: SciCrunch Registry
  

https://www.keyence.com/

Direct sales organization that develops and manufactures automation sensors, vision systems, barcode readers, laser markers, measuring instruments, and digital microscopes. Founder Takemitsu Takizaki. Headquarters Osaka, Osaka, Japan.

Proper citation: Keyence (RRID:SCR_023604) Copy   

•   Source: SciCrunch Registry
  

https://pypi.org/project/oncoboxlib/

Software library to calculate Pathways Activation Levels. It takes file that contains gene symbols in HGNC format, their expression levels for one or more samples and calculates PAL values for each pathway in each sample.

Proper citation: oncoboxlib (RRID:SCR_023722) Copy   

•   Source: SciCrunch Registry
  

https://github.com/KumarLabJax/JABS-behavior-classifier

Video based phenotyping platform for laboratory mouse. Provides complete details of software and hardware, including 3D designs used for data collection. Data acquisition system consists of video collection hardware and software, behavior labeling and active learning app, and online database for sharing classifiers. Hardware and software solution collects high quality data for behavior analysis.

Proper citation: JAX Animal Behavior System (RRID:SCR_023721) Copy   

•   Source: SciCrunch Registry
  

https://industry.nikon.com/en-us/products/x-ray-ct/xt-h-225-xt-h-320/

Provides insight into the inside of components and specimens, allowing users to visualize, analyze and measure complex internal geometry as well as surfaces, all non-destructively. Versatile microfocus CT system for high resolution inspection in R&D and failure analysis of components ranging from tiny plastic connectors up to aluminum castings.

Proper citation: Nikon: XT H 225 ST uCT system (RRID:SCR_023687) Copy   

•   Source: SciCrunch Registry
  

https://andor.oxinst.com/

Provides development and manufacture of high performance scientific digital cameras, microscopy systems and spectrographs for academic, industrial and government applications.

Proper citation: Andor (RRID:SCR_023609) Copy   

•   Source: SciCrunch Registry
  

https://www.bruker.com/en.html

Bruker Daltonics is subsidary of Bruker Corporation American. Bruker is manufacturer of scientific instruments for molecular and materials research, as well as for industrial and applied analysis.

Proper citation: Bruker Daltonics (RRID:SCR_023608) Copy   

•   Source: SciCrunch Registry
  

https://ngdc.cncb.ac.cn/databasecommons/

Curated catalog of worldwide biological databases to provide landscape of biological databases throughout the world and enable easy retrieval and access to specific collection of databases of interest. Catalog of worldwide biological databases as well as their curated meta information and derived statistics.

Proper citation: Database Commons (RRID:SCR_023661) Copy   

•   Source: SciCrunch Registry
  

https://github.com/vpc-ccg/svict

Software tool for detecting structural variations from cell free DNA containing low dilutions of circulating tumor DNA.

Proper citation: SViCT (RRID:SCR_023656) Copy   

•   Source: SciCrunch Registry
  

https://pmc.ncbi.nlm.nih.gov/articles/PMC4525701/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 25,2025. Web tool to parse Sanger sequencing chromatograms with double peaks into wildtype and alternative allele sequences. Used to separate chromatogram data containing ambiguous base calls into wildtype and mutant allele sequences.Used for identification of unknown indels using sanger sequencing of polymerase chain reaction products.

Proper citation: Poly Peak Parser (RRID:SCR_023776) Copy   

•   Source: SciCrunch Registry
  

https://github.com/emo-bon/MetaGOflow

Software pipeline for marine Genomic Observatories data analysis. Used to address challenges of analysis of European Marine Omics Biodiversity Observation Network data.

Proper citation: metaGOflow (RRID:SCR_023674) Copy   

•   Source: SciCrunch Registry
  

http://www.proteomesoftware.com/products/scaffold/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. Visualize and validate complex MS/MS proteomics experiments

Proper citation: Scaffold (RRID:SCR_014321) Copy   

•   Source: SciCrunch Registry
  

http://www.starrlifesciences.com/products/vitalview-software

A data acquisition and analysis software program. The program collects data from sensors and receivers and displays graphical data analysis as well as descriptive statistics.

Proper citation: VitalView Software (RRID:SCR_014497) Copy   

•   Source: SciCrunch Registry
  

https://ndar.nih.gov/tools_guid_tool.html

A customized software application that generates a Global Unique Identifier for each study participant. The GUID is a universal subject ID that allows researchers to share data specific to a study participant without exposing personally identifiable information (PII). The GUID has been approved by the NIH Office of General Counsel.

Proper citation: GUID Tool (RRID:SCR_014530) Copy   

•   Source: SciCrunch Registry
  

http://cbdm.uni-mainz.de/hippie/

Web tool used to generate confidence scored and functionally annotated human protein-protein interaction networks. Users can run a protein query using a UniProt identifier (ID or accession), gene symbol or Entrez gene id, or a network query using set fields.

Proper citation: HIPPIE (RRID:SCR_014651) Copy   

•   Source: SciCrunch Registry
  

https://www.qut.edu.au/research/research-projects/landmark-biobanks

A repository of human tissue samples collected during the LANDMark study (Longitudinal Assessment of Neuropathy in Diabetes using novel ophthalmic markers). The LANDMark Biobank longitudinal dataset contains blood and tissue (skin) samples and matching detailed phenotypic data of three microvascluar complications of type 1 diabetes: neuropathy, nephropathy and retinopathy.

Proper citation: LANDMark BioBanks (RRID:SCR_014534) Copy   

•   Source: SciCrunch Registry
  

http://bix.ucsd.edu/repeatscout/

Algorithm used to identify de novo repeat families in newly sequenced genomes. Repeat libraries for C. briggsae, M. muscles (X chromosome), R. novegicus (X chromosome), armadillo, H. sapiens (X chromosome), and various other mammals created using RepeatScout are available on the main site., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: RepeatScout (RRID:SCR_014653) Copy   

•   Source: SciCrunch Registry
  

http://www.exploranova.com/products/mercator/

A software package for quantification of histological sections. This software performs functions including: management and analysis of regions of interest, annotations, statistical analysis, and 3D visualization. These results are edited in an Excel-compatible spreadsheet.

Proper citation: Mercator (RRID:SCR_014493) Copy   

•   Source: SciCrunch Registry
  

http://www.imagemagick.org/script/index.php

Software suite for creating, editing, composing, and converting bitmap images. It can read and write images in over 200 formats including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. The user can use this software to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves.

Proper citation: ImageMagick (RRID:SCR_014491) Copy   

•   Source: SciCrunch Registry
  

http://www.pubatlas.org

A program that searches PubMed to generate a heat map using a user's search terms. It also allows you to see over the years how many publications there are with the user's search term(s).

Proper citation: pubatlas.org (RRID:SCR_014538) Copy   

•   Source: SciCrunch Registry