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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
An ELN (electronic lab notebook) software application where researchers can record and organize their data by recording, dragging, and dropping elements. Users can utilize tools and features such as image annotation, search and filter, protocol templates, and team communication. The format of the ELN is customizable and can be rearranged at any point.
Proper citation: labfolder (RRID:SCR_013974) Copy
http://s-quest.bihealth.org/fiddle/
Software interactive tool to help researchers to identify most appropriate publication format for their dataset that may be hard to publish in traditional journals. Formats include data repositories, micropublications, preprints, data journals, publishing platforms and journals that are open to null results. Users can search for publication format that meets their needs, compare and contrast formats, and find links to publishers. Open source tool to combat publication bias by getting research out of file drawer and into scientific community.
Proper citation: fiddle (RRID:SCR_017327) Copy
It is non-graphical user interface in MATLAB which relies on keyboard callback functions. Used for analyzing big data sets.
Proper citation: ROIs selection with a non-graphical user interface (RRID:SCR_016352) Copy
https://github.com/hash-bang/Reflib-Node
Reference library processing for JavaScript. Reference library processing for NodeJS.
Proper citation: RefLib (RRID:SCR_018320) Copy
SABiosciences, as part of QIAGEN, offers nucleic acid (DNA, RNA, miRNA) and protein isolation, preparation and purification services, as well as assay,array, sequencing, NGS and biomarker services and lab essentials.Offers PCR services, assays, array systems, and expression vectors. Acquired by QIAGEN in 2009.
Proper citation: SABiosciences (RRID:SCR_008578) Copy
http://mayoresearch.mayo.edu/mitochondrial-disease-biobank/
A biobank of blood and tissue samples from patients with known and suspected mitochondrial diseases along with data from their families. Samples are used in research to understand the family of mitochondrial disorders such as Alpers' syndrome, encephalopathy, and Friedrieich's ataxia, among many others. The goal of the biobank is to advance the understanding of mitochondrial disease and improve patient care.
Proper citation: Mayo Mitochondrial Disease Biobank (RRID:SCR_010598) Copy
https://research.miami.edu/about/labs-facilities/index.html
Number of core facilities and shared resources developed at University of Miami are available to researchers and trainees. These resources allow centralized access to specialized equipment and services, providing cutting edge technologies, reagents, and special products needed to conduct high quality, interdisciplinary research in cost effective way.
Proper citation: University of Miami Labs and Facilities (RRID:SCR_010996) Copy
The NCBCs are a set of networked computation core facilities for biomedical infrastructure funded under the NIH Common Fund, the National Program of Excellence in Biomedical Computing (NPEBC). There are seven funded Centers that cover systems biology, image processing, biophysical modeling, biomedical ontologies, information integration, and tools for gene-phenotype and disease analysis. The centers will create innovative software programs and other tools that enable the biomedical community to integrate, analyze, model, simulate, and share data on human health and disease. Each Center has Cores that are focused on (1) computational science, (2) biomedical computational science and (3) driving biological projects whose intent is to drive the interaction between computational and biomedical computational science. In addition to the Centers, the NIH has a number of active program announcements to develop collaborations with the biomedical research community��this includes announcements from the Biomedical Information Science and Technology Initiative (BISTI) and the Program for Collaborations with National Centers for Biomedical Computing. There are numerous efforts in education and training that emanate from the Centers and there is an annual all hands meeting.
Proper citation: National Centers for Biomedical Computing (RRID:SCR_010635) Copy
http://www.grenoble.prabi.fr/prabig
PrabiG is the Grenoble portal of the Prabi (Rhone-Alpes Bioinformatics Center) platform. It aims at providing the scientific community with tools and data related to proteomics and metabolomics. PrabiG is currently hosting the following projects : * UniPathway * ProteHome * OBIWarehouse * AT_Chloro
Proper citation: PrabiG (RRID:SCR_010636) Copy
Joint Information Systems Committee (JISC) is the UK''s expert on information and digital technologies for education and research. JISC inspires UK colleges and universities in the innovative use of digital technologies, helping to maintain the UK''s position as a global leader in education. JISC helps institutions make best use of technology to manage all aspects of their business. JISC provides access to the world-class Janet (UK) network, quality digital resources and a range of specialist advisory services. JISC provides: * A world-class network - JANET * Access to electronic resources * New environments for learning, teaching and research * Guidance on institutional change * Advisory and consultancy services * Regional support - JISC RSCs Partnerships JISC develops partnerships to enable the UK education and research communities to engage in national and global collaborations to overcome the challenges of delivering world-class ICT solutions and services. Funding Opportunities JISC funds a wide range of infrastructure, services, innovative projects and studies. A large number of these originate from a successful response to a grant funding call (previously known as a JISC Circular), inviting eligible HE and FE institutions to bid for project funding. JISC also procures other activities (usually studies such as an evaluation or market research), through invitations to tender which are available to other organizations to bid against. JISC is the name of our organization. Historically, it stood for Joint Information Systems Committee.
Proper citation: JISC (RRID:SCR_011331) Copy
http://www.mayo.edu/research/centers-programs/alzheimers-disease-research-center
A clinical research department that specializes in the study of Alzheimer's disease. The Mayo Clinic Alzheimer's Disease Research Center conducts many types of research studies related to dementia, as well as normal or successful aging. The purpose of the center is to provide care for dementia patients and promote research and education on Alzheimer's Disease and related dementias.
Proper citation: Mayo Alzheimer's Disease Research Center (RRID:SCR_008727) Copy
Association whose goal is to foster the spread of accurate scientific information.
Proper citation: National Association of Science Writers (RRID:SCR_014929) Copy
http://www.rarekidneystones.org
An organization of various participants and independent efforts representing four major diseases of hereditary nephrolithiasis. The Consortium facilitates cooperative exchange of information and resources among investigators, clinicians, patients, and researchers in order to improve care and outcomes for patients with rare stone diseases. The consortium promotes ready availability of diagnostic testing, pooling of clinical experiences, and availability of tissue banks in order to advance the science.
Proper citation: Rare Kidney Stone Consortium (RKSC) (RRID:SCR_014413) Copy
http://www.researchconnection.com
THIS RESOURCE IS NO LONGER IN SERVICE. Documented June 21, 2018.
A service resource and collaboration tool which connects academically affiliated researchers to undergraduate and graduate students. Researchers can advertise their lab and open positions as well as organize and manage applicants. Students can browse labs based on university and field(s) of interest and apply directly for lab positions or jobs. Universities must officially partner with ResearchConnection to advertise labs.
Proper citation: ResearchConnection (RRID:SCR_013965) Copy
It funded programs in 32 states and the District of Columbia in 2006 to promote cardiovascular health and to prevent morbidity and mortality due to heart disease and stroke. The Heart Disease and Stroke Prevention (HDSP) Policy Project was conducted to support the states in policy development and implementation. Through a contract with Mathematica Policy Research, Inc. (MPR), the following resources were developed: An annotated bibliography of state HDSP policy and activity sources A centralized database for state HDSP policies A guide to the fundamentals of HDSP policymaking A handbook for evaluating HDSP policies using an adaptation of the RE-AIM framework Sponsor. The HDSP Policy Project was supported by the Division for Heart Disease and Stroke Prevention, National Center for Chronic Disease Prevention and Health Promotion, Coordinating Center for Health Promotion, Centers for Disease Control and Prevention.
Proper citation: CDC DHDSP (RRID:SCR_012843) Copy
The department handles some of the most complex issues facing Queensland, including securing water for the future, managing land use, meeting the challenges of climate change, and conserving the states natural and cultural heritage. We promote sustainable living and resource use, and employ the latest science to underpin decision making. We are responsible for developing initiatives which ensure Queensland reduces its carbon footprint while also making sure the State is well-placed to meet the impacts of climate change. The Queensland Centre for Climate Change Excellence (QCCCE) provides specific climate science and research on climate change impacts and addresses issues that are specifically relevant to Queensland. A suite of ClimateSmart programs encourages householders and business to contribute to minimising the impacts of climate change by reducing their carbon emissions. This will help achieve the Queensland Governments Toward Q2 Green target: cut by one-third Queenslanders carbon footprint with reduced car and electricity use while also conserving water at home, work and in their communities. grants/funding Natural Resources Awareness Grants 2010 recipients announced The successful applicants for the Natural Resources Awareness Grants for 2010 have been announced. More than 100 000 has been allocated to 17 community projects to help promote the importance of natural resource management and reduce our carbon footprint. Koala disease research fund The Koala Disease Research Fund is offering grants to support high quality research that will guide DERM management actions to mitigate the effects of disease on wild populations of koalas. Indigenous cultural heritage grants Two cultural heritage grant programs administered by DERM offer funding formanaging and protecting Indigenous cultural heritage sites and helping registered Indigenous cultural heritage bodies fulfil their legislative role. Incentives for natural resource management Visit the Natural Resource Management Incentives database for information on grants offered by industry and federal, state, and local governments for natural resource management activities. Queensland Sustainable Energy Innovation Fund The Queensland Sustainable Energy Innovation Fund helps Queensland-based organisations to develop innovative technologies for reducing consumption of fossil fuels, water or greenhouse gas emissions. Great Artesian Basin Sustainability Initiative The Great Artesian Basin Sustainability Initiative provides financial assistance to landholders to rehabilitate bores and replace bore drains with piped systems, which help preserve water and restore artesian pressure. Other grants Visit Queensland GovernmentGrants, or call Smart Service Queensland on 13 13 04* for information on current funding and grants for all Queensland Government departments. * Local call costs apply Closed Low Carbon Diet Community Funding Program The Low Carbon Diet Community Funding Program assists with administration and delivery costs to help Queensland groups and organisations implement the diet. Applications for Round 4 close 7 December 2009. Lifestyle Waterwise Grants program The 10 million Lifestyle Waterwise Grants program was launched in December 2006 to encourage community-based not-for-profit organisations to reduce their water consumption.
Proper citation: Queensland DERM (RRID:SCR_012329) Copy
Software package of molecular simulation programs. It is distributed into AmberTools15 and Amber14. AmberTools15 is a software package which can carry out complete molecular dynamics simulations with either explicit water or generalized Born solvent models. It is distributed in source code format and must be compiled in order to be used. Amber14 builds on AmberTools15 by adding the pmemd program, which provides better performance on multiple CPUs and dramatic speed improvements on GPUs compared to sander (molecular dynamics). GPU info, manuals, and tutorials are available on the website.
Proper citation: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230) Copy
http://sharedresources.fredhutch.org/core-facilities/cceh-administration
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July,27,2022. Core facility that provides scientific and budgetary oversight for all CCEH activities. This includes training programs, high school summer internships, and and pilot and feasibility program for new projects.
Proper citation: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology (RRID:SCR_015320) Copy
http://www.med.umich.edu/mgpc/
Center whose goal is to investigate signal transduction mechanisms regulating homeostasis and GI disorders. Their approach includes studies on genetics and gene regulation, cellular signaling pathways, receptors and ion channels.
Proper citation: University of Michigan Center for Gastrointestinal Research (RRID:SCR_015605) Copy
https://commonfund.nih.gov/metabolomics/index
A US national program which supoorts the development of technologies in order to enhance the metabolomics field. It specifically increases the national metabolomics research capacity by supporting five core programs: Training in Metabolomics, Metabolomics Technology Development, Metabolomics Reference Standard Synthesis, Metabolomics Data Sharing and International Collaboration, and Comprehensive Metabolomics Resource Cores.
Proper citation: NIH Metabolomics program (RRID:SCR_014634) Copy
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