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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Indiana Diabetes Research Center Swine Core Resource Report Resource Website |
Indiana Diabetes Research Center Swine Core (RRID:SCR_015089) | access service resource, service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 14,2024. Core which utilizes a breeding colony of Ossabaw swine with metabolic syndrome and long-term complications, most notably cardiovascular disease. It provides swine maintenance (glucose tolerance tests, body composition, glucose clamp studies, and imaging studies), characterization of cardiovascular disease (intravascular ultrasound, blood flow velocity, microvascular studies), and tissues (both banked and fresh) for analysis ex vivo. | swine, metabolic syndrome, cardiovascular disease |
is listed by: NIDDK Information Network (dkNET) has parent organization: Indiana University School of Medicine; Indiana; USA has parent organization: Indiana Diabetes Research Center is organization facet of: Indiana Diabetes Research Center |
Diabetes | NIDDK P30DK097512; IUPUI Signature Center Initiative |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015089 | 2026-08-19 10:48:00 | 0 | ||||||||
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University of Washington Diabetes Research Center Cellular and Molecular Imaging Core Resource Report Resource Website |
University of Washington Diabetes Research Center Cellular and Molecular Imaging Core (RRID:SCR_015125) | resource, access service resource, service resource, core facility | Core facility that provides Diabetes Research Center affiliates with access to specialized expertise and equipment required for high quality histochemical and morphological analyses in a cost-effective manner. | diabetes, metabolic disorder, clinical research, histochemistry, morphological analysis |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Washington; Seattle; USA has parent organization: University of Washington Diabetes Research Center is organization facet of: University of Washington Diabetes Research Center |
Diabetes | NIDDK P30DK017047 | Available to the research community, Fee for service | SCR_015125 | 2026-08-19 10:48:02 | 0 | ||||||||
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Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility Resource Report Resource Website |
Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility (RRID:SCR_015082) | access service resource, service resource, core facility | Core that provides services that facilitate the efficient characterization of mouse models of diabetes and its complications: NMR Body Composition Analysis, Whole Body Metabolic Assessment (chamber calorimetry with motion detection), Metabolic Clamps, Gastric Infusion/Feeding and Thermogenic Phenotyping. | phenotyping, mouse, metabolic functions, |
is listed by: NIDDK Information Network (dkNET) has parent organization: Columbia University; New York; USA has parent organization: Columbia Diabetes Research Center is organization facet of: Columbia Diabetes Research Center |
Diabetes | NIDDK P30DK063608 | Available to the research community, Fee for service | ABRF_2856 | https://coremarketplace.org/?FacilityID=2856&citation=1 | https://www.derc.cumc.columbia.edu/core-facilities-and-services/mouse-metabolic-function-and-phenotyping-core | SCR_015082 | , Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core, Mouse Metabolic Function and Phenotyping Core | 2026-08-19 10:47:59 | 0 | ||||
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Indiana Diabetes Research Center Microscopy Core Facility Resource Report Resource Website |
Indiana Diabetes Research Center Microscopy Core Facility (RRID:SCR_015083) | access service resource, service resource, core facility | Core that provides consultation and specialized services for intravital microscopy of pancreas and transplanted islets, FRET assays, and fluorescent biosensors for analysis of intracellular signaling cascades to serve the area diabetes investigators. | microscopy, islet transplants, intravital microscopy, pancreas, transplanted islets, FRET assays, fluorescent biosensors, |
is listed by: NIDDK Information Network (dkNET) has parent organization: Indiana University School of Medicine; Indiana; USA is organization facet of: Indiana Diabetes Research Center |
Diabetes | NIDDK P30DK097512; IUPUI Signature Center Initiative |
Available to the research community, Fee for service | http://cdmd.indiana.edu/research-core/the-microscopy-core/ | SCR_015083 | Indiana Diabetes Research Center Microscopy Core | 2026-08-19 10:48:04 | 0 | ||||||
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Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility Resource Report Resource Website |
Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility (RRID:SCR_015081) | access service resource, service resource, core facility | Services include islet isolation services from mice and rats and access to porcine and human islets. The core is equipped with BioRep Perifusion Apparatus for measurement of insulin secretion and offers services for islet and beta cell calcium imaging. Provides services for islet transplantation and assists investigators who wish to perform immunohistochemistry, immunofluorescence and/or analysis of endocrine or beta cell mass on whole pancreata from mouse and rat models.Offers services for rodent metabolic characterization, including performance of insulin and glucose tolerance testing, analysis of body composition, and metabolic cage analysis using the TSE System cages. Recently added services include zebrafish characterization to screen genes and small molecules for their effects on islet development and function. | islets, physiology, diabetes research, islet transplantation services, beta cell mass analysis, whole pancreata, mouse, rat |
is listed by: NIDDK Information Network (dkNET) is listed by: ABRF CoreMarketplace has parent organization: Indiana Diabetes Research Center is organization facet of: Indiana Diabetes Research Center |
Diabetes | NIDDK P30DK097512; IUPUI Signature Center Initiative |
Open | ABRF_2889 | https://iu.ilab.agilent.com/service_center/show_external/5519/islet_physiology_core | http://cdmd.indiana.edu/research-core/the-islet-core/, https://coremarketplace.org/?FacilityID=2889&citation=1 | SCR_015081 | , Islet and Physiology Core, Indiana Diabetes Research Center Islet and Physiology Core, Indiana Diabetes Research Center Islet and Physiology Core Facility, Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core | 2026-08-19 10:47:24 | 0 | ||||
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Joslin Diabetes Center Induced Pluripotent Stem Cell Core Resource Report Resource Website 500+ mentions |
Joslin Diabetes Center Induced Pluripotent Stem Cell Core (RRID:SCR_015120) | access service resource, service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 6,2024. Core that maintains a centralized facility for the generation and propagation of reprogrammed iPS cells for use in molecular and cellular pathologies underlying diabetes and its complications. | ips cell, induced pluripotent stem cell, ips cell facility |
is listed by: NIDDK Information Network (dkNET) has parent organization: Joslin Diabetes Center is organization facet of: Joslin Diabetes Center |
Diabetes | NIDDK P30DK036836 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015120 | 2026-08-19 10:47:26 | 590 | ||||||||
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Indiana Diabetes Research Center Translation Core Facility Resource Report Resource Website |
Indiana Diabetes Research Center Translation Core Facility (RRID:SCR_015084) | access service resource, service resource, core facility | Core within Indiana Center for Diabetes and Metabolic Diseases that offers services that facilitate conduct of research involving human subjects, including providing low-cost, high quality analyte measurements for variety of hormones, cytokines, lipids and other analytes. Its human studies services include metabolic phenotyping (e.g. GTT, clamp studies, tracer studies), and access to a biobank of human tissues and serum. | human subject research, clinical trial, analyte measurements, hormones, cytokines, lipids, metabolic phenotyping, |
is listed by: NIDDK Information Network (dkNET) has parent organization: Indiana University School of Medicine; Indiana; USA has parent organization: Indiana Diabetes Research Center is organization facet of: Indiana Diabetes Research Center |
Diabetes | NIDDK P30DK097512; IUPUI Signature Center Initiative |
Available to the research community, Fee for service | http://cdmd.indiana.edu/research-core/the-translation-core/ | SCR_015084 | , Indiana Diabetes Research Center Translation Core, Indiana Translation Core | 2026-08-19 10:47:24 | 0 | ||||||
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Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core Facility Resource Report Resource Website |
Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core Facility (RRID:SCR_015085) | access service resource, service resource, core facility | Core that provides spectrum of advanced cellular and tissue pathology and imaging services for diabetes researchers at Columbia University. It also has microscopy equipment and services such as confocal, live 2-photon and scanning and transmission electron microscopy. | tissue, pathology, diabetes, imaging, microscopy, cellular and tissue pathology, |
is listed by: NIDDK Information Network (dkNET) is listed by: ABRF CoreMarketplace has parent organization: Columbia University; New York; USA is organization facet of: Columbia Diabetes Research Center |
Diabetes | NIDDK P30DK063608 | Available to the research community, Fee for service | ABRF_2854 | https://coremarketplace.org/?FacilityID=2854&citation=1 | https://www.derc.cumc.columbia.edu/core-facilities-and-services/advanced-tissue-pathology-and-imaging-core | SCR_015085 | , Advanced Tissue Pathology and Imaging Core, Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core | 2026-08-19 10:47:59 | 0 | ||||
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Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core Resource Report Resource Website |
Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core (RRID:SCR_015090) | resource, access service resource, service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 9,2024. Core that provides services in tissue analysis and imaging, islet biology, liver biology, and adipocyte biology. It includes the indepedent cores Derivation of IPSC and Bioenergetics as well as the Specialty Animal Surgery Subcore and Bone Biology Subcore. | cell biology, tissue analysis, diabetes research |
is listed by: NIDDK Information Network (dkNET) has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA has parent organization: Johns Hopkins University - University of Maryland Diabetes Research Center has parent organization: University of Maryland; Maryland; USA is organization facet of: Johns Hopkins University - University of Maryland Diabetes Research Center |
Diabetes | NIDDK P30DK079637 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015090 | 2026-08-19 10:47:24 | 0 | ||||||||
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AmiGO Resource Report Resource Website 1000+ mentions |
AmiGO (RRID:SCR_002143) | AmiGO | production service resource, service resource, data analysis service, data or information resource, analysis service resource, database | Web tool to search, sort, analyze, visualize and download data of interest. Along with providing details of the ontologies, gene products and annotations, features a BLAST search, Term Enrichment and GO Slimmer tools, the GO Online SQL Environment and a user help guide.Used at the Gene Ontology (GO) website to access the data provided by the GO Consortium. Developed and maintained by the GO Consortium. | search, sort, analyze, visualize, data, ontology, gene, annotation, FASEB list |
uses: GOlr is used by: NIF Data Federation is listed by: OMICtools is listed by: Gene Ontology Tools is related to: ASAP is related to: Candida Genome Database is related to: Berkeley Bioinformatics Open-Source Projects is related to: ECO is related to: Zebrafish Information Network (ZFIN) is related to: Gramene is related to: WormBase is related to: NCBI Protein Database is related to: UniProtKB is related to: GeneDB Lmajor is related to: TAIR is related to: SGD is related to: GeneDB Tbrucei is related to: VMD is related to: JCVI CMR is related to: go-db-perl is related to: Mouse Genome Informatics (MGI) is related to: NCBI is related to: FlyBase is related to: GeneDB Pfalciparum is related to: PomBase is related to: Pseudomonas Genome Database is related to: Dictyostelium discoideum genome database is related to: Plant Ontology is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: MeGO is related to: ASPGD is related to: EcoCyc is related to: Reactome is related to: SGN is related to: GO-Module is related to: Songbird Brain Transcriptome Database is related to: Rat Genome Database (RGD) is related to: RamiGO has parent organization: Gene Ontology |
NHGRI P41 HG002273 | PMID:19033274 | Free, Available for download, Freely available | nif-0000-20935, OMICS_02266 | http://sourceforge.net/projects/geneontology/ | SCR_002143 | GO Consortium, AmiGO, AmiGO 2, AmiGene Ontology, Gene Ontology Database, Gene Ontology Consortium, GO Database, The Gene Ontology Consortium | 2026-08-20 09:25:40 | 1285 | ||||
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NCI Mouse Repository Resource Report Resource Website 10+ mentions |
NCI Mouse Repository (RRID:SCR_002264) | NCIMR | organism supplier, material resource, biomaterial supply resource | The NCI Mouse Repository cryoarchives and distributes strains of genetically engineered mice that are of immediate interest to the cancer research community. These are either gene-targeted or transgenic mice that display a cancer-related phenotype, or tool strains (e.g., cre transgenics) that can be used to develop new cancer models. You do not have to be a member of the NCI Mouse Repository or a recipient of NCI funding to have your mouse model distributed through the NCI Mouse Repository. NCI Mouse Repository strains are maintained as live colonies or cryoarchived as frozen embryos, depending on demand. Up to three breeder pairs may be ordered from live colonies. Cryoarchived strains are supplied as frozen embryos or recovery of live mice by the NCI Mouse Repository may be requested. | embryo, engineered, frozen, gene, genetically, breed, breeder, cancer, colony, cryoarchive, human, live, model, mouse model, phenotype, strain, transgenic, mutant, female, male |
is listed by: One Mind Biospecimen Bank Listing has parent organization: NCI-Frederick |
NCI | Free, Freely available | nif-0000-20985 | http://mouse.ncifcrf.gov/ | SCR_002264 | MMHCC, MMHCC Repository, Mouse Models of Human Cancers Consortium (MMHCC) Repository, Mouse Models of Human Cancers Consortium Repository | 2026-08-20 09:25:40 | 19 | |||||
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SNPSTATS Resource Report Resource Website 500+ mentions |
SNPSTATS (RRID:SCR_002142) | SNPStats | production service resource, service resource, source code, data analysis service, analysis service resource, software resource | A web-based application designed from a genetic epidemiology point of view to analyze association studies using single nucleotide polymorphisms (SNPs). For each selected SNP, you will receive: * Allele and genotype frequencies * Test for Hardy-Weinberg equilibrium * Analysis of association with a response variable based on linear or logistic regression * Multiple inheritance models: co-dominant, dominant, recessive, over-dominant and additive * Analysis of interactions (gene-gene or gene-environment) If multiple SNPs are selected: * Linkage disequilibrium statistics * Haplotype frequency estimation * Analysis of association of haplotypes with the response * Analysis of interactions (haplotypes-covariate) | gene, genetic, genomic, single nucleotide polymorphism, association study, genetic, epidemiology, allele, frequency, genotype, allele frequency, genotype frequency, hardy-weinberg equilibrium, linkage disequilibrium, haplotype frequency, haplotype, interaction, haplotypes-covariate, association, linear regression, logistic regression, inheritance model, co-dominant, dominant, recessive, over-dominant, additive, gene-gene, gene-environment |
is listed by: Genetic Analysis Software has parent organization: Autonomous University of Barcelona; Barcelona; Spain |
PMID:16720584 | Free, Available for download, Freely available | nlx_154650 | http://bioinfo.iconcologia.net/snpstats/ | SCR_002142 | SNP STATisticS | 2026-08-20 09:25:43 | 668 | |||||
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Gene Index Project Resource Report Resource Website 100+ mentions |
Gene Index Project (RRID:SCR_002148) | TGI, DFCI TGI | topical portal, portal, data or information resource, database, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone.. Documented on August 19,2019.The goal of The Gene Index Project is to use the available Expressed Sequence Transcript (EST) and gene sequences, along with the reference genomes wherever available, to provide an inventory of likely genes and their variants and to annotate these with information regarding the functional roles played by these genes and their products. The promise of genome projects has been a complete catalog of genes in a wide range of organisms. While genome projects have been successful in providing reference genome sequences, the problem of finding genes and their variants in genomic sequence remains an ongoing challenge. TGI has created an inventory that contains genes and their variants together with description. In addition, this resource is attempting to use these catalogs to find links between genes and pathways in different species and to provide lists of features within completed genomes that can aid in the understanding of how gene expression is regulated. DATABASES *Eukaryotic Gene Orthologues (formerly known as TOGA - TIGR Orthologous Gene Alignment): Eukaryotic Gene Orthologues (EGO) at DFGI are generated by pair-wise comparison between the Tentative Consensus (TC) sequences that comprise the Dana Farber Gene Indices from individual organisms. The reciprocal pairs of the best match were clustered into individual groups and multiple sequence alignments were displayed for each group. *GeneChip Oncology Database (GCOD):Cancer gene expression database is a collection of publicly available microarray expression data on Affymetrix GeneChip Arrays related to human cancers. Currently only datasets with available raw data (Affymetrix .CEL files) are processed. All processed datasets were subjected to extensive manual curation, uniform processing and consistent quality control. You can browse the experiments in our collection, perform statistical analysis, and download processed data; or to search gene expression profiles using Entrez gene symbol, Unigene ID, or Affymetrix probeset ID. *Gene Indices: As of July 1, 2008, there are 111 publicly available gene indices. They are separated into 4 categories for better organization and easier access. Animal: 41, Plant: 45, Protist: 15, Fungal: 10 *Genomic Maps: Human, mouse, rat, chicken, drosophila melanogaster, zebrafish, mosquito, caenorhabditis elegans, Arabidopsis thaliana, rice, yeast, fission yeast Dana-Farber Cancer Institute (DFCI) Gene Indices Software Tools: *TGI Clustering tools (TGICL): a software system for fast clustering of large EST datasets. *GICL: this package contains the scripts and all the necessary pre-compiled binaries for 32bit Linux systems. *clview: an assembly file viewer. *SeqClean:a script for automated trimming and validation of ESTs or other DNA sequences by screening for various contaminants, low quality and low-complexity sequences. *cdbfasta/cdbyank: fast indexing/retrieval of fasta records from flat file databases. *DAS/XML Genomic Viewer The Genomic viewer borrows modules from http://www.biodas.org (lstein (at) cshl.org) & http://webreference.com. | functional, gene, genome, index, organism, pathway, product, role, sequence, species, transcript, variant, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Dana-Farber Cancer Institute |
DOE DBI-0552416 | PMID:7566098 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:tigr_gene_indices, nif-0000-20942 | https://bio.tools/tigr_gene_indices | SCR_002148 | DFCI Gene Index Project, Gene Index Project, DFCI | 2026-08-20 09:25:37 | 129 | ||||
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dbMHC Resource Report Resource Website 10+ mentions |
dbMHC (RRID:SCR_002302) | dbMHC | storage service resource, service resource, data or information resource, data repository, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23, 2019 Database was open, publicly accessible platform for DNA and clinical data related to human Major Histocompatibility Complex (MHC). Data from IHWG workshops were provided as well., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | human leukocyte antigen, microsatellite, dna, clinical, major histocompatibility complex, primer, probe, sequence, allele, haplotype, sequence, histocompatibility, leucocyte, alignment |
is listed by: re3data.org is related to: NIDDK Information Network (dkNET) is related to: IMGT/HLA has parent organization: NCBI |
PMID:14705985 | Free, Available for download, Freely available | nif-0000-02729, r3d100010881 | https://doi.org/10.17616/R37W4F | http://www.ncbi.nlm.nih.gov/gv/mhc/main.cgi?cmd=init | SCR_002302 | Major Histocompatibility Complex Database | 2026-08-20 09:25:41 | 22 | ||||
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Cinteny Resource Report Resource Website 10+ mentions |
Cinteny (RRID:SCR_002147) | web application, database, data or information resource, software resource | Online database for finding and analyzing syntenic regions across multiple genomes and measuring the extent of genome rearrangement using reversal distance as a measure. | syntenic genes, genome rearrangement, online genome database | is listed by: OMICtools | NIAID R21 AI055338; NIAMS R01 AR050688 |
PMID:17343765 | Free, Freely available | OMICS_00931 | SCR_002147 | Cinteny Server for Synteny Identification and Analysis of Genome Rearrangement | 2026-08-20 09:25:40 | 18 | ||||||
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FlyMove Resource Report Resource Website 1+ mentions |
FlyMove (RRID:SCR_002257) | FlyMove | image collection, video resource, narrative resource, data or information resource, database, training material | Database combining movies, animated schemata, interactive modules and pictures that will greatly facilitate the understanding of Drosophila development. The resource is aimed at university students and teachers of developmental biology classes. Contribute your own movies, images and illustrations to FlyMove. Illustrating developmental processes using first hand research data will allow students to gain a better understanding of the real organism, and it will allow you to draw their attention to your field of research and to your group. All donors of media integrated in FlyMove will be cited and links to their homepages will be made. | fruit fly, development, drosophila, image, movie, process, undergraduate, in vivo, graphic, animation, virtual experiment, life cycle, stage, organogenesis, genetics, method, quiz | has parent organization: University of Munster; North Rhine-Westphalia; Germany | BMBF | PMID:12801722 | Free, Available for download, Freely available | nif-0000-20976 | SCR_002257 | Fly Move | 2026-08-20 09:25:46 | 1 | |||||
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IDbases Resource Report Resource Website 10+ mentions |
IDbases (RRID:SCR_002378) | storage service resource, service resource, data or information resource, data repository, database | IDbases are locus-specific databases for immunodeficiency-causing mutations. Our aim is to establish database for every immunodeficiency or provide links to those maintained elsewhere. IDbases contain in addition to gene mutation, also information about clinical presentation. Information has been collected from literature as well as received directly from researchers. It would be most glad if those analyzing mutations would send their information by using the interactive web submission available in each database. A number of articles have been published related to IDbases. IDbases are curated and distributed with proprietary MUTbase software suite. | gene, clinical, database, immunodeficiency, immunological database, locus, mutation, presentation, specific | has parent organization: University of Tampere; Tampere; Finland | PMID:17004234 | nif-0000-21214 | SCR_002378 | IDbases | 2026-08-20 09:25:43 | 16 | ||||||||
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Cvapp Resource Report Resource Website 1+ mentions |
Cvapp (RRID:SCR_002095) | software application, data processing software, source code, data or information resource, database, software resource | Online platform for visualizing and editing the morphology of neurons. Written in Java. | neuron morphology, java applet, visualization platform, editing platform |
has parent organization: George Mason University; Virginia; USA has parent organization: Duke University; North Carolina; USA has parent organization: University of Southampton; Southampton; United Kingdom |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00109 | https://github.com/pgleeson/Cvapp-NeuroMorpho.org | http://www.compneuro.org/CDROM/docs/cvapp.html | SCR_002095 | 2026-08-20 09:25:38 | 2 | |||||||
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Virtual brain Resource Report Resource Website 10+ mentions |
Virtual brain (RRID:SCR_002249) | tvb | software application, simulation software, software resource | Simulation software for modeling the entire human brain by combining structural and functional data from empirical neuroimaging data. It can generate local field potentials, EEG, MEG and fMRI BOLD data based on neural mass models. The user can also modify the model parameters to match clinical conditions from focal lesions or degenerative disorders. | dti, simulation, modeling, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Toronto; Ontario; Canada |
James S. McDonnell Foundation | PMID:23442172 PMID:23774395 |
Free, Freely available | nlx_155567 | http://www.nitrc.org/projects/tvb | SCR_002249 | thevirtualbrain.org, The Virtual Brain, thevirtualbrain | 2026-08-20 09:25:46 | 45 | ||||
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VoxBo Resource Report Resource Website 10+ mentions |
VoxBo (RRID:SCR_002166) | VoxBo | image processing software, software application, data processing software, image analysis software, software resource | Software package for brain image manipulation and analysis, focusing on fMRI and lesion analysis. VoxBo can be used independently or in conjunction with other packages. It provides GLM-based statistical tools, an architecture for interoperability with other tools (they encourage users to incorporate SPM and FSL into their processing pipelines), an automation system, a system for parallel distributed computing, numerous stand-alone tools, decent wiki-based documentation, and lots more. | fmri, neuroimaging, brain, functional, statistical, volume, preprocessing, analysis, display, format conversion, linear, three dimensional display, workflow, lesion, analyze, c++, console (text based), dicom, image display, linux, macos, microsoft, magnetic resonance, nifti, no input/output (daemon), overlap metrics, posix/unix-like, quantification, regression, resampling, sinc function interpolation, spatial transformation, statistical operation, visualization, windows |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: Debian has parent organization: neurodebian |
NIDA R01DA014418; NIMH R01MH073529 |
PMID:22348882 | Free, Available for download, Freely available | nif-0000-00353 | https://sources.debian.org/src/voxbo/, https://github.com/kimberg/voxbo | http://www.voxbo.org/ | SCR_002166 | 2026-08-20 09:25:43 | 13 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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