Tools   Select Another Resource Report Type

http://cmpg.unibe.ch/software/BayeScan/index.html

Software tool to identify candidate loci under natural selection from genetic data, using differences in allele frequencies between populations.

Proper citation: BayeScan (RRID:SCR_022018) Copy   

•   Source: SciCrunch Registry
  

https://github.com/Benson-Genomics-Lab/TRF

Software tool to locate and display tandem repeats in DNA sequences. Program to analyze DNA sequences.

Proper citation: Tandem Repeats Finder (RRID:SCR_022193) Copy   

•   Source: SciCrunch Registry
  

https://github.com/bwa-mem2/bwa-mem2

Software tool for sequence mapping.The next version of BWA-MEM. Used for aligning sequencing reads against large reference genome.

Proper citation: BWA-MEM2 (RRID:SCR_022192) Copy   

•   Source: SciCrunch Registry
  

https://www.thermofisher.com/us/en/home/life-science/cell-analysis/cellular-imaging/evos-cell-imaging-systems/models/evos-xl-core.html?ef_id=Cj0KCQjwpImTBhCmARIsAKr58cwB-d2Yr5yUaQuJlpybgp8ywZnlsAUkt4VcZMv6TTE7czxdnzJlVOgaAiv5EALw_wcB:G:s&s_kwcid=AL!3652!3!586406505002!p!!g!!evos%20xl&cid=bid_pca_iie_r01_co_cp1359_pjt0000_bid00000_0se_gaw_bt_lgn_ins&gclid=Cj0KCQjwpImTBhCmARIsAKr58cwB-d2Yr5yUaQuJlpybgp8ywZnlsAUkt4VcZMv6TTE7czxdnzJlVOgaAiv5EALw_wcB

Designed to eliminate complexities of microscopy, EVOS XL Core system captures high-quality brightfield cell images right at your benchtop within minute. Instrument for monitoring cell cultures, either within hood or in cell culture room.

Proper citation: Thermo Fisher: EVOS XL Core Imaging System (RRID:SCR_022190) Copy   

•   Source: SciCrunch Registry
  

http://www.ruffus.org.uk

Software lightweight Python library for computational pipelines. Reproducible pipeline framework.

Proper citation: Ruffus (RRID:SCR_022196) Copy   

•   Source: SciCrunch Registry
  

https://github.com/marbl/MashMap

Software tool as fast approximate aligner for long DNA sequences. Used for computing local alignment boundaries between long DNA sequences.

Proper citation: MashMap (RRID:SCR_022194) Copy   

•   Source: SciCrunch Registry
  

http://gmdd.shgmo.org/Computational-Biology/GRS/

A compression tool for efficient storage of Genome Re-Sequencing data. GRS processes genome sequence data without use of reference SNPs and other variants. It can also automatically rebuild the individual genome sequence data using the reference genome sequence.

Proper citation: GRS (RRID:SCR_001008) Copy   

•   Source: SciCrunch Registry
  

http://ntap.cbi.pku.edu.cn/usage.php

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software for tiling array data analysis to survey the genome-wide binding sites of transcription factor HY5 in Arabidopsis and the genome-wide histone modifications/DNA methylation level in rice. It was developed in the process of generating NimbleGen analysis. Written in R and Perl.

Proper citation: NTAP (RRID:SCR_001488) Copy   

•   Source: SciCrunch Registry
  

http://www.opensourcebrain.org

A resource for sharing and collaboratively developing computational models of neural systems. While models can be submitted and developed in any format, the use of open standards such as NeuroML and PyNN is encouraged, to ensure transparency, modularity, accessibility and cross simulator portability. OSB will provide advanced facilities to analyze, visualize and transform models in these formats, and to connect researchers interested in models of specific neurons, brain regions and disease states. Research themes include: Basal ganglia modelling, Cerebellar Granule cell modelling, Cerebellar modelling, Hippocampal modelling, Neocortical modelling, Whole brain models. Additional themes are welcome.

Proper citation: Open Source Brain (RRID:SCR_001393) Copy   

•   Source: SciCrunch Registry
  

http://combo.dbe.unifi.it/medusa

Web server of multi draft based scaffolder.Exploits information obtained from set of genomes from related organisms to determine correct order and orientation of contigs.

Proper citation: MeDuSa (RRID:SCR_022058) Copy   

•   Source: SciCrunch Registry
  

https://biomedical-instruments.com/pdf/Narishige%20PC-10.pdf

Vertical pipette puller to create microelectrodes from borosilicate capillaries.

Proper citation: Narishige: PC 10 Puller (RRID:SCR_022057) Copy   

•   Source: SciCrunch Registry
  

https://www.zeitz-puller.com/

Horizontal pipette puller to pull and polish microelectrodes from borosilicate capillaries.

Proper citation: Zeitz: DMZ Universal Electrode Puller (RRID:SCR_022056) Copy   

•   Source: SciCrunch Registry
  

https://modelorg-ab.creative-biolabs.com/category-by-species-2.htm

Antibody group provides researchers with functional proteomics research platform. Antibody customization service provider. Custom antibody development team can work with you to create customized antibody solution to meet your specific research needs. Provides monoclonal antibody screening. Prepares monoclonal antibody library to screen monoclonal antibodies for appropriate peptide epitope of each protein.

Proper citation: Creative Biolabs Model Organism Antibodies Service Resource (RRID:SCR_022177) Copy   

•   Source: SciCrunch Registry
  

https://proq3.bioinfo.se/

Improved model quality assessments using Rosetta energy terms. Predictor combines training features from ProQRosCen, ProQRosFA and ProQ2.

Proper citation: ProQ3 (RRID:SCR_021880) Copy   

•   Source: SciCrunch Registry
  

https://biomedical-instruments.com/pdf/Narishige%20MF-830.pdf

Powerful microscope mounted to produce microelectrodes for patch clamping.

Proper citation: Narishige: MF 830 Microgrinder (RRID:SCR_022055) Copy   

•   Source: SciCrunch Registry
  

https://www.mines.edu/

Public research university in Golden, Colorado, founded in 1874. School offers both undergraduate and graduate degrees in engineering, science, and mathematics, with focus on energy and environment.

Proper citation: Colorado School of Mines; Golden; Colorado (RRID:SCR_022054) Copy   

•   Source: SciCrunch Registry
  

https://github.com/ndaniel/fusioncatcher

Software that searches for novel/known fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples.

Proper citation: FusionCatcher (RRID:SCR_000060) Copy   

•   Source: SciCrunch Registry
  

https://prosa.services.came.sbg.ac.at/prosa.php

Interactive web service for recognition of errors in three dimensional structures of proteins.

Proper citation: ProSA web (RRID:SCR_021879) Copy   

•   Source: SciCrunch Registry
  

http://www.nitrc.org/projects/vutools/

VUIIS (Vanderbilt University Institute of Imaging Science) Image and Data Analysis Core's data processing tools written for MATLAB and, unless stated otherwise, capable of processing 2D/3D images (matrices). These tools are written for ease of use from within MATLAB.

Proper citation: vuTools (RRID:SCR_001704) Copy   

•   Source: SciCrunch Registry
  

http://dunbrack.fccc.edu/pisces/

Software tool as protein sequence culling server. Used for culling sets of protein sequences from Protein Data Bank (PDB) by sequence identity and structural quality criteria. Can provide lists culled from entire PDB or from lists of PDB entries or chains provided by user.

Proper citation: PISCES (RRID:SCR_022181) Copy   

•   Source: SciCrunch Registry