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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Japanese Collection of Research Bioresources Cell Bank Resource Report Resource Website 10+ mentions |
Japanese Collection of Research Bioresources Cell Bank (RRID:SCR_023187) | JCRB Cell Bank | biomaterial supply resource, cell repository, material resource | Collection of various human and animal culture cells including cancer and genetically modified cells. Cell resources are distributed to researchers across Japan and around the world. These cells are comprehensively qualified by testing microbial contamination, virus contamination and cross culture contamination. Some cells are characterized by karyotyping and/or cell surface markers. In collaboration with other major cell banks in the world, we are developing methods for cell culturing and quality control in order to support fundamental research on medical of pharmaceutical sciences. | works with: Cellosaurus | SCR_023187 | SciCrunch Registry | Japanese Collection of Research Bioresources (JCRB) Cell Bank | 2026-10-31 12:19:31 | 11 | ||||||||||
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Resource Information Network Resource Report Resource Website |
Resource Information Network (RRID:SCR_023186) | RIN | data or information resource, portal | Integrated data set and analytics platform combining Research Resource Identifiers (RRIDs), text mining and data aggregation. |
lists: Cellosaurus lists: International Mouse Strain Resource lists: Shanghai Model Organisms Center lists: Texas A and M Institute for Genomic Medicine lists: European Mouse Mutant Archive lists: RIKEN BioResource Center lists: Center for Animal Resources and Development lists: National Institute of Genetics; Shizuoka; Japan lists: NHMRC Australian PhenomeBank lists: Antibody Registry lists: FlyBase lists: Rat Genome Database (RGD) lists: Kyoto Stock Center lists: Bloomington Drosophila Stock Center lists: Drosophila Genomics Resource Center lists: Sperm Stem Cell Libraries for Biological Research lists: Tetrahymena Stock Center lists: WormBase lists: Zebrafish International Resource Center lists: Mutant Mouse Resource and Research Center lists: Mouse Genome Informatics (MGI) lists: GemPharmatech lists: Beta Cell Biology Consortium lists: Case Western Reserve University Cystic Fibrosis Mouse Models Core lists: Medical Research Council Harwell: An International Centre for Mouse Genetics lists: Taconic Biosciences lists: Charles River Laboratories lists: Xiphophorus Genetic Stock Center lists: National Xenopus Resource lists: European Xenopus Resource Center lists: National Swine Resource and Research Center lists: Xenopus Express lists: Rat Resource and Research Center lists: Ambystoma Genetic Stock Center lists: CMMR - Canadian Mouse Mutant Repository lists: JAX Mice and Services lists: Addgene lists: NCBI BioSample lists: Vienna Drosophila Resource Center lists: SciCrunch Registry |
SCR_023186 | SciCrunch Registry | 2026-10-31 12:19:30 | 0 | |||||||||||
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Meadows Resource Report Resource Website 10+ mentions |
Meadows (RRID:SCR_023218) | data or information resource, portal | Online behavioral experiment platform. | behavioural experiments, experiment platform | Restricted | SCR_023218 | SciCrunch Registry | 2026-10-31 12:19:30 | 11 | |||||||||||
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Pennsieve Data Management Platform Resource Report Resource Website 1+ mentions |
Pennsieve Data Management Platform (RRID:SCR_021677) | data or information resource, portal | Platform to manage and curate large scientific datasets. Used for scientific data management and analysis.Provides advanced functionality to organize files and complex metadata describing datasets and allows users to interact, search, and analyze these data through web application or programmatically using Python client. Provides end-to-end solution for publishing datasets through Blackfynn Discover, assigning DOIs and ensuring that published data becomes available to larger academic community in sustainable and FAIR manner. | Organize files, organize metadata, curate large scientific datasets, scientific data management, FAIR | Restricted | SCR_021677 | SciCrunch Registry | 2026-10-31 12:19:28 | 2 | |||||||||||
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scijava Resource Report Resource Website 1+ mentions |
scijava (RRID:SCR_023335) | data or information resource, portal, project portal, software resource | Collection of foundational software libraries, upon which ImageJ2 and Fiji are built. It is a collaboration of projects providing software for scientific computing in effort to cooperate and reuse code. | Collection of foundational software libraries, reuse code, scientific computing cooperation, | Free, Available for download, Freely available | https://github.com/scijava/ | SCR_023335 | SciCrunch Registry | 2026-10-31 12:19:30 | 1 | ||||||||||
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COVID CG Resource Report Resource Website 1+ mentions |
COVID CG (RRID:SCR_022266) | data processing software, software application, software resource | Open browser to inform therapeutics development for tracking SARS-CoV-2 single nucleotide variations, lineages, and clades using virus genomes on GISAID database while filtering by location, date, gene, and mutation of interest. can Provides information on which virus mutations are present in area during specific period by processing data on mutations found in viral genetic material collected worldwide from hundreds of thousands of people with COVID-19, which are hosted in existing online database. | SNVs, Single Nucleotide Variations, single nucleotide variations, tracking SARS-CoV-2, virus genomes, GISAID database, virus mutations, processing data on mutations found in viral genetic material, COVID-19 | DOI:10.7554/eLife.63409 | Free, Available for download, Freely available | https://github.com/vector-engineering/covidcg | SCR_022266 | SciCrunch Registry | COVID-19 CG, covidcg.org, COVID-19 CoV Genetics (CG), COVID-19 CoV Genetics | 2026-10-31 12:19:29 | 2 | ||||||||
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DataLyser Resource Report Resource Website |
DataLyser (RRID:SCR_022783) | data processing software, software application, software resource | A software to display, record and data processing of physiological signals. DataLyser is custom-built software developed at Walter Reed Army Institute of Research, Silver Spring, MD. It is not copyrighted. | Display, record and data processing, physiological signals | DOI:10.13140/RG.2.2.11025.94563 | Restricted | SCR_022783 | SciCrunch Registry | 2026-10-31 12:19:29 | 0 | ||||||||||
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PretextMap Resource Report Resource Website 50+ mentions |
PretextMap (RRID:SCR_022023) | data processing software, software application, software resource | Software tool to convert SAM formatted read pairs into genome contact maps. Prepares alignments for visualization with PretextView. | convert SAM formatted read pairs, genome contact maps, prepare alignments for visualization | works with: PretextView | Free, Available for download, Freely available | SCR_022023 | SciCrunch Registry | Paired REad TEXTure Mapper, Wellcome Sanger Institute's High Performance Assembly Group's Paired REad TEXTure Mapper | 2026-10-31 12:19:28 | 88 | |||||||||
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Open Anatomy Project Resource Report Resource Website |
Open Anatomy Project (RRID:SCR_022141) | data or information resource, portal, project portal | Project aims to change anatomy atlas by building atlases through open data, community based collaborative development, and free distribution of medical knowledge. Provides access to several 2D and 3D browser based tools. | Atlas, Brigham and Women's Hospital in Boston, digital anatomy atlas, open data, community based collaborative development, medical knowledge | NCRR ; NIBIB |
Free, Freely available | SCR_022141 | SciCrunch Registry | The Open Anatomy Project | 2026-10-31 12:19:29 | 0 | |||||||||
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gFACs Resource Report Resource Website 1+ mentions |
gFACs (RRID:SCR_022017) | data processing software, software application, software resource | Software package provides comprehensive framework for evaluating, filtering, and analyzing gene models from range of input applications and preparing these annotations for formal publication or downstream analysis. | filtering, analysis, conversion, unify genome annotations, alignment and gene prediction frameworks, | National Science Foundation Plant Genome Research Program of the United States 1444573 | DOI:10.1016/j.gpb.2019.04.002 | Free, Available for download, Freely available | SCR_022017 | SciCrunch Registry | 2026-10-31 12:19:29 | 5 | |||||||||
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Genomic Answers for Kids Resource Report Resource Website 1+ mentions |
Genomic Answers for Kids (RRID:SCR_021840) | GA4K | data or information resource, portal, project portal | Flagship initiative of Childrens Mercy Research Institute and Genomic Medicine Center in Kansas City. This research program is building pediatric data repository to facilitate search for answers and novel treatments.Goal is to collect genomic data and health information for 30,000 children and their families to create a database of genomes. | Pediatric rare disease cohort, GA4K program, genetic disease, pediatric data repository | DOI:10.1101/2021.10.07.21264628 | Free, Freely available | SCR_021840 | SciCrunch Registry | 2026-10-31 12:19:29 | 3 | |||||||||
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Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas Resource Report Resource Website 1+ mentions |
Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas (RRID:SCR_022816) | atlas, data or information resource, reference atlas | Labels provide resource to isolate and identify mouse brain anatomical structures. Cell type specific transgenic mice and an MRI atlas were used to adjust and further segment the labels. Highly segmented anatomical labels in the adult mouse brain common coordinate framework. | isolate and identify mouse brain, brain anatomical structures, transgenic mice, MRI atlas, segment the labels | is used by: BICCN | Free, Freely available | SCR_022816 | SciCrunch Registry | Highly segmented anatomical labels in the adult mouse brain common coordinate framework. | 2026-10-31 12:19:29 | 5 | |||||||||
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DUB Portal Resource Report Resource Website 1+ mentions |
DUB Portal (RRID:SCR_022476) | data or information resource, portal | Provides integration and analysis of publicly available resources as well as newly collected transcriptomic data following deubiquitinating enzyme (DUB) knockout or inhibition to facilitate exploration of DUB function in oncology. | Natural language processing, deubiquitinating enzymes, integrative resource, transcriptomic data analysis, DUB function in oncology | DOI:10.1101/2021.08.06.455458 | Free, Available for download, Freely available | https://github.com/labsyspharm/dubportal | SCR_022476 | SciCrunch Registry | 2026-10-31 12:19:29 | 1 | |||||||||
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WikiProject Zika Corpus Resource Report Resource Website |
WikiProject Zika Corpus (RRID:SCR_022079) | data or information resource, portal, project portal | Web portal related to Zika virus, including metadata collection for academic publications on the topic, structured data ontology of terms, and integrated resources in the Wikidata platform. | Zika virus data collection, metadata collection, structured data ontology, integrated resources | Free, Freely available | SCR_022079 | SciCrunch Registry | 2026-10-31 12:19:28 | 0 | |||||||||||
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GeneTools Resource Report Resource Website 100+ mentions |
GeneTools (RRID:SCR_022505) | data processing software, image analysis software, software application, software resource | Software package includes comprehensive tools to provide full range of analysis for applications including chemiluminescence, chemifluorescence, fluorescence, colorimetric imaging and colony counting. | Synoptics Ltd., Syngene, chemiluminescence, chemifluorescence, fluorescence, colorimetric imaging, colony counting. | is listed by: SoftCite | Restricted | SCR_022505 | SciCrunch Registry | 2026-10-31 12:19:30 | 201 | ||||||||||
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fMOST Atlas Resource Report Resource Website |
fMOST Atlas (RRID:SCR_022868) | atlas, data or information resource, reference atlas | Reference atlas for mice. Contains both average and annotation templates. | reference atlas for mice, average and annotation templates | Free, Freely available | SCR_022868 | SciCrunch Registry | 2026-10-31 12:19:31 | 0 | |||||||||||
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Stanford University Community of Shared Advanced Research Platforms Resource Report Resource Website 10+ mentions |
Stanford University Community of Shared Advanced Research Platforms (RRID:SCR_022986) | C-ShARP | data or information resource, organization portal, portal | Center coordinates ideas and investments to advance and democratize access to Stanford cores, instrumentation, scientific and technical staff, allowing users to perform innovative, rigorous experiments. | USEDit, ABRF, access to Stanford cores, access to Stanford instrumentation, access to Stanford scientific and technical staff |
is related to: ABRF CoreMarketplace is related to: USEDit has parent organization: Stanford University; Stanford; California |
Free, Freely available | ABRF_2461 | https://coremarketplace.org/?FacilityID=2461&citation=1 | SCR_022986 | SciCrunch Registry | Community of Shared Advanced Research Platforms | 2026-10-31 12:19:29 | 13 | ||||||
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Prepare_SplicingPredictors Resource Report Resource Website 1+ mentions |
Prepare_SplicingPredictors (RRID:SCR_023316) | data processing software, software application, software resource | Software tool as set of scripts to prepare the input for several sequence-based RNA splicing methods from VCF files. | RNA splicing, sequence based models, prepare input from VCF files, | Fundação para a Ciência e a Tecnologia (FCT) Portugal | DOI:10.1101/2023.02.17.528928 | Free, Available for download, Freely available | SCR_023316 | SciCrunch Registry | 2026-10-31 12:19:30 | 1 | |||||||||
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ROBOKOP Resource Report Resource Website 1+ mentions |
ROBOKOP (RRID:SCR_023437) | ROBOKOP | data or information resource, portal, project portal | ROBOKOP system consists of web based user interface, API server, and several worker servers. Biomedical knowledge graph that integrates and semantically harmonizes important knowledge sources. Contains nodes representing entities such as genes, chemicals, and diseases, and edges representing relationships between them. Abstraction layer and user interface for knowledge graphs to support question answering. Used for reasoning over structured biomedical knowledge databases as part of NCATS translator and reasoner programs. ROBOKOP Knowledge Graph Builder constructs KG and provides extensible framework to handle graph query over and integration of federated data sources. | NCATS translator, knowledge graphs, structured biomedical knowledge databases, genes, chemicals, diseases, node, relationships edges, | NCATS OT2R002514; NCATS OT3TR002020; NIEHS U24ES035214 |
PMID:31410449 PMID:31769676 |
Free, Freely available | https://github.com/NCATS-Gamma/robokop, http://robokopkg.renci.org/browser/, | SCR_023437 | SciCrunch Registry | , ROBOKOP Graph Knowledgebase; Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways, ROBOKOP Knowledge Graph Builder (KGB), ROBOKOP KG, ROBOKOP KGB, ROBOKOP Knowledge Graph | 2026-10-31 12:19:30 | 3 | ||||||
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Creative Biogene Mitochondria and Cardiac Diseases Resource Report Resource Website |
Creative Biogene Mitochondria and Cardiac Diseases (RRID:SCR_022083) | data or information resource, organization portal, portal, service resource | Creative Biogene provides range of services and products to assist researchers in cardiac disease related mitochondria studies. Offers comprehensive testing services for evaluation of variety of cardiac diseases. Mitochondria focused testings and services with advantage of animal based models. | Mitochondria and Cardiac Diseases, Creative Biogene, testing services, cardiac disease related mitochondria studies, | myocardial infarction, cardiomyopathies of various etiologies, arrhythmias, atherosclerosis, hypertension | Restricted | SCR_022083 | SciCrunch Registry | 2026-10-31 12:19:28 | 0 |
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