Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MP3 tool Resource Report Resource Website 1+ mentions |
MP3 tool (RRID:SCR_019282) | simulation software, software application, software resource | Software tool for prediction of pathogenic proteins in genomic and metagenomic data. Used for identification of partial pathogenic proteins predicted from short (100-150 bp) metagenomic reads and also performs on complete protein sequences., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | pathogenic proteins, pathogenic proteins prediction, genomic data, metagenomic data, partial pathogenic proteins, partial pathogenic proteins prediction, complete protein sequences, bio.tools |
is listed by: bio.tools is listed by: Debian |
Institutional Research Fund of IISER Bhopal | PMID:24736651 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:mp3 | https://bio.tools/mp3 | SCR_019282 | MP3 | 2026-09-19 12:54:05 | 2 | |||||
|
Expyfun Resource Report Resource Website 1+ mentions |
Expyfun (RRID:SCR_019285) | software library, software resource, software toolkit | Auditory and visual stimulus delivery library for psychoacoustics in Python. | Auditory, visual stimulus, stimulus delivery, library, psychoacoustics, Python. | Free, Available for download | SCR_019285 | 2026-09-19 12:54:05 | 1 | |||||||||||
|
gbs2ploidy Resource Report Resource Website |
gbs2ploidy (RRID:SCR_019290) | data analysis software, data processing software, software application, software resource, software toolkit | Software R package as functions for inference of ploidy from Genotyping By Sequencing data, including function to infer allelic ratios and allelic proportions in Bayesian framework. | Genotyping-by-sequencing data, GBS data, ploidy inference, allelic ratios infer, allelic proportions, Bayesian framework, ploidy level detection | is listed by: CRAN | PMID:28150424 | Free, Available for download, Freely available | SCR_019290 | 2026-09-19 12:54:05 | 0 | |||||||||
|
BayesEpiModels Web App Resource Report Resource Website 1+ mentions |
BayesEpiModels Web App (RRID:SCR_019292) | analysis service resource, production service resource, service resource, software resource, web application | Web app to help assess both short- and long-term forecasts of COVID-19 across the United States at multiple levels. Done by implementing one time-series model (ARIMA), one compartmental models (basic SIR), and six classical growth models, which all yield satisfactory prediction results in the past and current pandemics at early stage. | COVID-19, SARS-CoV-2, stochastic growth model, stochastic SIR model, Bayesian inference, | Free, Freely available | SCR_019292 | 2026-09-19 12:54:05 | 1 | |||||||||||
|
ChiRA Resource Report Resource Website 1+ mentions |
ChiRA (RRID:SCR_019219) | data or information resource, data processing software, narrative resource, software application, software resource, software toolkit, training material, workflow | Software tool suite to analyze RNA-RNA interactome experimental data such as CLASH, CLEAR-CLIP, PARIS, SPLASH, etc. | RNA-RNA interactome experimental data, experimental data analysis, miRNA, RNA-RNA interactome, RNA structurome, CLASH, CLEAR-CLIP, PARIS, SPLASH, chimeric read, read, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:chira | https://rna.usegalaxy.eu/, https://bio.tools/chira | SCR_019219 | Chimeric Read Analyzer | 2026-09-19 12:54:04 | 6 | |||||||
|
ConPlot Resource Report Resource Website 1+ mentions |
ConPlot (RRID:SCR_019216) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web application for visualisation of information derived from residue contact predictions in combination with other sources of information, such as secondary structure predictions, transmembrane helical topology, sequence conservation.Provides interactive interface for researchers in field of protein bioinformatics that are interested in analysing data on given protein. | Residue contact predictions, protein, secondary structure predictions, transmembrane helical topology, sequence conservation, protein bioinformatics, analysing data |
is related to: CCP4 has parent organization: University of Liverpool; Liverpool; United Kingdom |
Restricted | SCR_019216 | 2026-09-19 12:54:04 | 2 | ||||||||||
|
Trial Registration Number screener Resource Report Resource Website 1+ mentions |
Trial Registration Number screener (RRID:SCR_019211) | TRNscreener | data analysis software, data processing software, software application, software resource | Software tool as R script to provide function that takes two arguments: path to folder of plain text files named by their DOI, and output filename. For each file in folder, it searches for trial identifiers based on regex matching and writes CSV that contains all trial registration numbers and in case of ClinicalTrials.gov entries, whether they correspond to registry entry on ClinicalTrials.gov. | ClinicalTrials.gov, plain text files, DOI named, output filename, trial identifiers searches, regex matching, trial registration numbers, ASWG | has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany | Free, Available for download, Freely available | SCR_019211 | Trial Registration Number screener, Trial registration number screener | 2026-09-19 12:54:04 | 1 | ||||||||
|
spdep Resource Report Resource Website 1+ mentions |
spdep (RRID:SCR_019294) | data analysis software, data processing software, software application, software resource, software toolkit | Software R package as collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree. | Spatial weights matrix objects, spatial dependence, weighting schemes, spatial weights, matrix objects | is listed by: CRAN | Free, Available for download, Freely available | https://github.com/r-spatial/spdep/ | SCR_019294 | Spatial Dependence: Weighting Schemes and Statistics, spatial dependence | 2026-09-19 12:54:05 | 2 | ||||||||
|
scales Resource Report Resource Website 10+ mentions |
scales (RRID:SCR_019295) | data processing software, data visualization software, software application, software resource, software toolkit | Software R package as scale functions for visualization. Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends. | Scale functions, visualization, graphical scales, map data, axes, determining breaks, legend, determining labels | Free, Available for download, Freely available | https://github.com/r-lib/scales | SCR_019295 | 2026-09-19 12:54:05 | 18 | ||||||||||
|
Agilent: 1290 Infinity II Online SPE System Resource Report Resource Website |
Agilent: 1290 Infinity II Online SPE System (RRID:SCR_019380) | instrument resource | Online SPE System automates solid phase extraction to enrich analytes, remove matrix components or lower detection limits. | Agilent, GPS/SEC System, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019380.pdf | Model_Number_1290 Infinity II Online SPE | SCR_019380 | 2026-09-19 12:54:07 | 0 | |||||||||
|
Agilent: 240Z AA Atomic Absorption System Resource Report Resource Website |
Agilent: 240Z AA Atomic Absorption System (RRID:SCR_019385) | instrument resource | Atomic Absorption System is used for detection limits and analyzes difficult matrices. | Agilent, Atomic Absorption System, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019385.pdf | Model_Number_240Z_AA | SCR_019385 | 2026-09-19 12:54:07 | 0 | |||||||||
|
Agilent: 1290 Infinity II Preparative LC/MSD System Resource Report Resource Website |
Agilent: 1290 Infinity II Preparative LC/MSD System (RRID:SCR_019381) | instrument resource | Preparative LC/MSD System enables high throughput purification and delivers high quality compounds. | Agilent, Preperative LC System, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019381.pdf | Model_Number_Infinity_II | SCR_019381 | 2026-09-19 12:54:07 | 0 | |||||||||
|
Agilent: 4100 MP-AES Resource Report Resource Website |
Agilent: 4100 MP-AES (RRID:SCR_019390) | instrument resource | Discontinued Superseded by 4210 MP AES System. | Agilent, MP-AES, Instrument Equipment, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019390.pdf | Model_Number_4100 | SCR_019390 | 2026-09-19 12:54:07 | 0 | ||||||||||
|
SynergyFinder Resource Report Resource Website 500+ mentions |
SynergyFinder (RRID:SCR_019318) | data processing software, data visualization software, software application, software resource, software toolkit | Software R package as efficient implementations for all popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of synergy scores as either two dimensional or three dimensional interaction surface over dose matrix. Used to calculate and visualize synergy scores for drug combinations. | Synergy scores, drug combinations, popular synergy scoring models, dimensional interaction surface, dose matrix, bio.tools |
is listed by: Bioconductor is listed by: bio.tools is listed by: Debian is related to: SynergyFinder web application |
DOI:10.1007/978-1-4939-7493-1_17 | Free, Available for download, Freely available | biotools:synergyfinder | https://bio.tools/synergyfinder | SCR_019318 | synergyfinder | 2026-09-19 12:54:05 | 624 | ||||||
|
Agilent: 4200 MP-AES Resource Report Resource Website |
Agilent: 4200 MP-AES (RRID:SCR_019396) | instrument resource | High sensitivity atomic emission spectrometer. MP-AES Instrument utilizes microwave plasma and as it runs on air instead of combustible gases, it can be installed in either centralized laboratory or remote location. Detection limits down to ppb levels and no sample pretreatment necessary. | Agilent, MP-AES, Instrument Equipment, USEDit, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019396.pdf | Model_Number_4200_MP-AES | https://www.agilent.com/cs/library/brochures/5991-7237EN.pdf | SCR_019396 | 2026-09-19 12:54:07 | 0 | ||||||||
|
Agilent: 240FS AA Atomic Absorption System Resource Report Resource Website |
Agilent: 240FS AA Atomic Absorption System (RRID:SCR_019397) | instrument resource | Atomic Absorption System determines the concentration of all elements from a single aspiration. | Agilent, Atomic Absorption System, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_019397.pdf | Model_Number_240FS | SCR_019397 | 2026-09-19 12:54:07 | 0 | |||||||||
|
Agilent: 4210 MP-AES Resource Report Resource Website |
Agilent: 4210 MP-AES (RRID:SCR_019399) | instrument resource | MP-AES provides detection limits and large linear dynamic range. | Agilent, MP-AES, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019399.pdf | Model_Number_4210 | SCR_019399 | 2026-09-19 12:54:07 | 0 | |||||||||
|
Agilent: 490 Micro GC System Resource Report Resource Website |
Agilent: 490 Micro GC System (RRID:SCR_019404) | instrument resource | Micro GC System is used for gas analysis and offers comprehensive system control, data acquisition and report generation.. | Agilent, GC System, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019404.pdf | Model_Number_490_Micro GC | https://www.agilent.com/en/product/gas-chromatography/gc-systems/490-micro-gc-system | SCR_019404 | 2026-09-19 12:54:07 | 0 | ||||||||
|
Agilent: 490 Micro GC Biogas Analyzer Resource Report Resource Website 1+ mentions |
Agilent: 490 Micro GC Biogas Analyzer (RRID:SCR_019405) | instrument resource | Micro GC Biogas Analyzer is used to analyze biogas and related sample streams and provide results. | Agilent, GC Analyzers, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019405.pdf | Model_Number_490_ Micro GC_Biogas | https://www.agilent.com/cs/library/applications/5990-9508EN.pdf | https://www.agilent.com/en/product/gas-chromatography/gc-analyzers/energy-chemical-gc-analyzers/490-micro-gc-biogas-analyzer | SCR_019405 | 2026-09-19 12:54:07 | 2 | |||||||
|
Agilent: 1290 Infinity II Analytical-Scale LC Purification System Resource Report Resource Website |
Agilent: 1290 Infinity II Analytical-Scale LC Purification System (RRID:SCR_019367) | instrument resource | This purification system detects UV or MS and clusters of multiple fraction collectors. | Agilent, LC Purification System, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019367.pdf | Model_Number_1290 Infinity II Analytical-Scale LC | SCR_019367 | 2026-09-19 12:54:06 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
