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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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DataLad Resource Report Resource Website 50+ mentions |
DataLad (RRID:SCR_003931) | DataLad | data or information resource, portal, software resource | Project to adapt model of open source software distributions to address technical limitations of data sharing and develop all components of data distribution. Builds on top of git-annex and extends it with intuitive command line interface. Enables users to operate on data using familiar concepts, such as files and directories, while transparently managing data access and authorization with underlying hosting providers. Can create DataLad datasets using any data files published on the web. | Data sharing, aggregator, federated platform, distributed version control system, data set |
uses: OpenNeuro uses: CRCNS uses: NeuroImaging Tools and Resources Collaboratory (NITRC) uses: NIH Human Connectome Project uses: Mind Research Network - COINS uses: 1000 Functional Connectomes Project uses: Git uses: git-annex is related to: datasets.datalad.org has parent organization: Dartmouth College; New Hampshire; USA has parent organization: Otto-von-Guericke University Magdeburg; Saxony-Anhalt; Germany has parent organization: Research Center Jülich; Jülich; Germany works with: ReproIn: The ReproNim image input management system (featuring DataLad) |
NSF 1429999; BMBF 01GQ1411; NSF 1912266; BMBF 01GQ1905; NIH 1P41EB019936-01A1; European Union’s Horizon 2020 research and innovation programme 945539; European Union’s Horizon 2020 research and innovation programme 826421; Deutsche Forschungsgemeinschaft SFB1451-INF; German federal state of Saxony-Anhalt and the European Regional Development Fund ; NIH 1R24MH117295-01A1 |
DOI:10.21105/joss.03262 | Free, Freely available | nlx_158300 | https://github.com/datalad/datalad.org | SCR_003931 | DataGit, Data Lad | 2026-08-18 09:41:07 | 58 | ||||
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Roslin Wellcome Trust Tick Cell Biobank Resource Report Resource Website 1+ mentions |
Roslin Wellcome Trust Tick Cell Biobank (RRID:SCR_004228) | Roslin Wellcome Trust Tick Cell Biobank | cell repository, material resource, biomaterial supply resource | The world''s largest collection of tick cell lines, enabling scientists to carry out advanced research. This biobank is establishing a collection of all the continuous cell lines derived from ixodid and argasid ticks of medical and veterinary importance available worldwide now and in future. Ticks are blood feeding arthropods which transmit many human and animal diseases. Research into prevention and cure of these diseases, which are caused by viruses, bacteria and protozoa, is greatly assisted by the use of cell culture systems which enable study of both how tick cells function, and how and why ticks transmit these disease-causing pathogens. Cell lines will always be shipped to recipient laboratories as growing cultures, since we cannot guarantee successful resuscitation of frozen stabilates. Tick cells in culture can tolerate the range of temperatures experienced during transit by air for up to a week. Training: We will provide training in tick cell line care and maintenance. This is an essential component of successful transfer of tick cells to, and their establishment in, laboratories with little or no previous experience of tick cell culture. Recipient scientists (preferably the person who will actually look after the cells) can visit the biobank for between 2 days and 2 weeks, depending on their level of previous experience, to be trained in the specific approach and methods for tick cell cultivation. Establishment of new cell lines: In response to requests and on receipt of suitable starting material (engorged female or moulting nymphal ticks), we will attempt to establish new cell lines from tick species or strains which are not already represented in the collection. Deposition of new tick cell lines: We invite researchers anywhere in the world who have established new tick cell lines to deposit samples for safekeeping free of charge and, if requested, for distribution alongside the existing biobank portfolio. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Edinburgh; Scotland; United Kingdom |
Wellcome Trust | Public | nlx_24657 | http://tickcells.roslin.ac.uk/ | SCR_004228 | 2026-08-18 09:41:13 | 2 | |||||||
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Cryo-Save Resource Report Resource Website |
Cryo-Save (RRID:SCR_004504) | Cryo-Save | cell repository, material resource, biomaterial supply resource | Stem cell banking is a unique opportunity to store the precious building blocks of the human body; cord blood, cord tissue and fat tissue are just some sources of stem cells ready to provide the foundation for more than 70 treatments of blood, blood related diseases and future applications in regenerative medicine. To not consider the storage or donation of these precious stem cells could be a missed opportunity! Cryo-Save is officially recognized as the largest family stem cell bank in Europe. With more than 180,000 samples stored and four fully-owned storage facilities throughout the world, Cryo-Save has over ten years'' experience and state-of-the-art technical know-how, providing the basis for a strong and reliable organization. An ethical approach, scientific professionalism and customer-focused care are the core elements of our daily activities, as we strive to be an active player in life-science development in over 40 countries. Our company was established in 2000, is headquartered in the Netherlands and successfully active in 40 countries across four continents. We are officially accredited by the regulatory authorities and set the highest quality standards in everything we do. We follow a dual storage system, meaning that the stem cells are stored independently in two separate storage tanks within our state-of-the-art facility. Our dedication to research in collaboration with universities, physicians and stem cell scientists has put us at the forefront of technological developments. | umbilical cord blood, blood, cord tissue, fat tissue, stem cell, cryopreserved, frozen, newborn |
is listed by: One Mind Biospecimen Bank Listing is related to: ITERA Life - Sciences |
Newborn, Etc | Private / Public: Our dedication to research in collaboration with universities, Physicians and stem cell scientists has put us at the forefront of technological developments. | nlx_48843 | SCR_004504 | Cryo-Save: The Family Stem Cell Bank, Cryo-Save: Save for Life, Cells Limited | 2026-08-18 09:41:13 | 0 | ||||||
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Massachusetts Human Stem Cell Bank Resource Report Resource Website |
Massachusetts Human Stem Cell Bank (RRID:SCR_004141) | MHSCB | cell repository, material resource, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 31, 2016. Stem cell research, particularly human embryonic stem cell (hESC) research, holds tremendous promise to discover therapeutic options and perhaps cures for insidious diseases such as cancer, juvenile diabetes, Alzheimer's and Parkinson's. The Massachusetts Human Stem Cell Bank provides the biomedical research community with expertly maintained human ES (hES) and reprogrammed (iPS) cell lines to facilitate studies into the properties and potential therapeutic applications of pluripotent stem cells. The Bank cultures, characterizes and distributes quality controlled hES and iPS cell lines derived in Massachusetts and beyond. The Bank is a 15,000 square foot facility that contains research and training space for visiting investigators. In addition, the Education and Training division provides technical training and programs to educate the community. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Massachusetts Medical School; Massachusetts; USA |
Massachusetts Life Sciences Center | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_16360 | SCR_004141 | UMass Human Stem Cell Bank and Registry | 2026-08-18 09:41:12 | 0 | |||||||
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Centre for Vision Research Resource Report Resource Website |
Centre for Vision Research (RRID:SCR_002879) | data or information resource, portal, organization portal | The Centre for Vision Research focuses on interdisciplinary research into human and machine vision and visual processes, into vision's interactions with other senses and with motor and cognitive processes, and in applications such as visually-guided robotics or clinical diagnosis and treatment. The Centre for Vision Research includes the following major research themes: - Human Visual Performance - Visual Human-Computer Interaction, Graphics and Virtual Reality - Visual Psychophysics - Eye Movements and Hand-Eye Coordination - Computational Modeling and Computer Vision - Electrophysiology - Clinical and Developmental Studies - Brain Imaging | electrophysiology, engineering, eye, biology, brain, clinical, cognition, cognitive, computer, computer science, coordination, developmental, graphic, health science, human, imaging, interaction, kinesiology, machine, modeling, motor, performance, psychology, psychophysics, research, sense, technology, virtual, vision | has parent organization: York University; Ontario; Canada | Free, Freely available | nif-0000-25614 | SCR_002879 | CVR | 2026-08-18 09:40:43 | 0 | ||||||||
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Childhood Leukaemia Cell Bank Resource Report Resource Website |
Childhood Leukaemia Cell Bank (RRID:SCR_004135) | Childhood Leukaemia Cell Bank | cell repository, material resource, biomaterial supply resource | This is a facility for UK-based research into leukemia and other related disorders. The Bank contains viable cells and DNA from children diagnosed with acute leukemia. (diagnostic, treatment and relapse samples) and also HLA- typed normal cord blood donations. Samples can only be obtained from the Cell Bank for approved peer-reviewed and fully costed research projects. To view further information about the Cell Bank, or for instruction on how to apply for samples, please register. | is listed by: One Mind Biospecimen Bank Listing | Leukemia | nlx_143572 | SCR_004135 | Childhood Leukemia Cell Bank | 2026-08-18 09:41:08 | 0 | ||||||||
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DOE Joint Genome Institute Resource Report Resource Website 500+ mentions |
DOE Joint Genome Institute (RRID:SCR_003045) | DOE JGI, JGI, | data or information resource, portal, organization portal | Institute to advance genomics in support of the DOE missions related to clean energy generation and environmental characterization and cleanup. Supported by the DOE Office of Science, the DOE JGI unites the expertise at Lawrence Berkeley National Laboratory, Lawrence Livermore National Laboratory, and the HudsonAlpha Institute for Biotechnology. The facility provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges. | genomics, sequencing, computational analysis, clean energy, environment, biotechnology, nucleotide sequence, protein, genome, bacteria, microorganism, fungal colony, fungal community, dna, phenotype, molecular biology, life science, genomics, genetics, nature, nurture, ecology, bioenergetics, high-throughput sequencing |
is listed by: re3data.org has parent organization: University of California; California; USA is parent organization of: Microbial Genetics Resource at JGI is parent organization of: JGI Genome Portal is parent organization of: Genomes Online Database is parent organization of: IMG System is parent organization of: Classifier for Metagenomic Sequences is parent organization of: MycoCosm is parent organization of: Plant Genome Resource at JGI is parent organization of: Classifier for Metagenomic Sequences is parent organization of: Phytozome is parent organization of: IMG is parent organization of: Metagenomics Program at JGI is parent organization of: Assembly Likelihood Estimator is parent organization of: 1000 Fungal Genome Project is parent organization of: Bestus Bioinformaticus Tools is parent organization of: Bestus Bioinformaticus Duk is parent organization of: Bestus Bioinformaticus Merge is parent organization of: Reformat |
DOE | Free, Freely available | nif-0000-30425 | SCR_003045 | DOE Joint Genome Institute - Enabling Advances in Bioenergy & Environmental Research, Department of Energy Joint Genome Institute, Joint Genome Institute | 2026-08-18 09:40:58 | 701 | ||||||
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Mantle Cell Lymphoma Cell Bank Resource Report Resource Website |
Mantle Cell Lymphoma Cell Bank (RRID:SCR_004379) | MCL Cell Bank, | cell repository, material resource, biomaterial supply resource | The Lymphoma Research Foundation (LRF), in collaboration with American Type Culture Collection (ATCC), has created a Mantle Cell Lymphoma (MCL) Cell Bank. The Cell Bank is a collection of various MCL lines created by scientists from all over the world. The idea for the Cell Bank was generated by the scientists that make up the MCL Consortium (MCLC). It was created to provide a single, centralized location where scientists can easily acquire high-quality, well-characterized MCL cell lines in an effort to accelerate discoveries in MCL. LRF has acquired 8 different MCL cell lines (July 2010): Mino, Z-138, JVM-2, JVM-13, REC-1, NCEB-1, JeKo-1, and Maver-1. The Cell Bank is chaired by Dr. Owen O''Connor of New York University Langone Medical Center and is housed at ATCC, the world''s largest biological resource center and the most comprehensive source of reference cultures and reagents used by researchers in the academic and industry laboratories. The Cell Bank was made possible by the scientists who generously agreed to share their resources, including, Dr. Elias Campo, Dr. Zeev Estrov, Dr. Richard Ford, Dr. Junia Melo and Dr. Alberto Zamo. | cell line, mantle cell lymphoma cell line, mantle cell lymphoma |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Lymphoma Research Foundation has parent organization: ATCC |
Mantle cell lymphoma | Public: Created to provide a single, Centralized location where scientists can easily acquire high-quality, Well-characterized MCL cell lines in an effort to accelerate discoveries in MCL. | nlx_39167 | http://www.mantlecelllymphoma.org/site/c.mwKUJbNUJrF/b.4017065/k.E4F0/Cell_Bank.htm | SCR_004379 | Mantle Cell Lymphoma (MCL) Cell Bank | 2026-08-18 09:41:10 | 0 | |||||
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Phoenix Resource Report Resource Website 1000+ mentions |
Phoenix (RRID:SCR_003163) | Phoenix | cell repository, material resource, biomaterial supply resource | A second-generation retrovirus producer lines for the generation of helper free ecotropic and amphotropic retroviruses. The lines are based on the 293T cell line (a human embryonic kidney line transformed with adenovirus E1a and carrying a temperature sensitive T antigen co-selected with neomycin). The unique feature of this cell line is that it is highly transfectable with either calcium phosphate mediated transfection or lipid-based transfection protocols-- up to 50% or higher of cells can be transiently transfected. The lines were created by placing into 293T cells constructs capable of producing gag-pol, and envelope protein for ecotropic and amphotropic viruses. The lines offered advantages over previous stable systems in that virus can be produced in just a few days. Academic and non-profit laboratories may obtain the Phoenix cells from either Allele Biotechnology or the National Gene Vector Bank. The vectors may be obtained from Addgene. They are no longer distributing these reagents from the lab. | retrovirus, episome, producer line, cell line, vector |
is listed by: One Mind Biospecimen Bank Listing is related to: Allele Biotechnology is related to: National Gene Vector Biorepository is related to: Addgene has parent organization: Stanford University; Stanford; California |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156864 | SCR_003163 | Phoenix helper, Phoenix system | 2026-08-18 09:41:01 | 3057 | |||||||
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Cryogenic Laboratories, Inc Resource Report Resource Website |
Cryogenic Laboratories, Inc (RRID:SCR_003558) | cell repository, material resource, biomaterial supply resource | A US sperm bank that offers superior donor sperm and sperm banking services, including sperm storage and embryo storage. We provide the highest quality in the industry as one of the few sperm banks fully accredited by the American Association of Tissue Banks (AATB). Cryogenic Laboratories is fully compliant with FDA regulations. Extensive donor Information is downloaded FREE for ALL sperm donors. Searching for a donor is fun, easy and free of charge. Most other sperm banks require you to pay for each donor information product you view. So look and listen for free 24/7. Childhood photos, audio clips, medical and personal profiles are all free. Monthly specials are also there to make the process easier. | sperm, embryo | is listed by: One Mind Biospecimen Bank Listing | nlx_11110 | SCR_003558 | 2026-08-18 09:41:06 | 0 | ||||||||||
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FGED Resource Report Resource Website 10+ mentions |
FGED (RRID:SCR_001897) | FGED | data or information resource, portal, knowledge environment | Society that develop standards for biological research data quality, annotation and exchange. They facilitate the creation and use of software tools that build on these standards and allow researchers to annotate and share their data easily. They promote scientific discovery that is driven by genome wide and other biological research data integration and meta-analysis. Historically, FGED began with a focus on microarrays and gene expression data. However, the scope of FGED now includes data generated using any technology when applied to genome-scale studies of gene expression, binding, modification and other related applications. | gene expression, gene modification, biological, biologist, biomedical, computer scientist, data analyst, genomic, integration, life science, microarray, technology, functional genomics, annotate, data sharing, genome, data integration, software |
is listed by: OMICtools is parent organization of: MINSEQE is parent organization of: MAGE is parent organization of: MIAME |
OMICS_01778, nif-0000-10466 | http://www.mged.org/ | SCR_001897 | Functional Genomics Data Society, MGED Society, The Microarray Gene Expression Data Society, The Functional Genomics Data Society, MGED | 2026-08-18 09:40:28 | 24 | |||||||
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Human Gene Connectome Resource Report Resource Website 1+ mentions |
Human Gene Connectome (RRID:SCR_002628) | HGC | data or information resource, software resource, data set | Data set containing a gene-specific connectome file for each human gene and computer programs for ranking lists of genes within a gene-specific connectome, clustering and plotting the genes by the functional genomic alignment (FGA) approach, and generating gene-specific connectomes. The programs were developed and tested on Mac and Linux systems. The external software required for running these programs is open-source and free of charge. The HGC is the set of all biologically plausible routes, distances, and degrees of separation between all pairs of human genes. A gene-specific connectome contains the set of all available human genes sorted on the basis of their predicted biological proximity to the specific gene of interest. The HGC is a powerful approach for human genotype-phenotype high-throughput studies, for which it can be used to rank any list of genes within a gene-specific connectome for an experimentally validated core gene. Functional genomic alignment (FGA) is equivalent to traditional multiple sequence alignment (MSA), except that it clusters genes in trees on the basis of the functional biological distance between them predicted by HGC, rather than on the basis of molecular evolutionary genetic distance. This method is therefore more suitable for disease and phenotypic studies. | gene, disease, phenotype, genome, connectome, functional genomic alignment |
has parent organization: Rockefeller University; New York; USA is parent organization of: Human Gene Connectome Server |
NCATS 8 UL1 TR000043 | PMID:23509278 | Free | nlx_156050 | SCR_002628 | 2026-08-18 09:40:53 | 6 | ||||||
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Rigbox Resource Report Resource Website 1+ mentions |
Rigbox (RRID:SCR_021517) | data management software, software resource, software application | Open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. Used for managing behavioral neuroscience experiments and acquiring experiment related data. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox project |
DOI:10.1523/eneuro.0406-19.2020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/rigbox/ | SCR_021517 | 2026-08-18 09:45:36 | 5 | ||||||||
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TrainingSpace Resource Report Resource Website 1+ mentions |
TrainingSpace (RRID:SCR_022036) | training resource, data or information resource, portal, online course | Portal that provides multimedia educational content from courses, conference lectures, and laboratory exercises from some of leading neuroscience institutes and societies to be more accessible to global neuroscience community. | Training materials resource, neuroscience multimedia educational content, neuroscience community | Free, Freely available | SCR_022036 | 2026-08-18 09:45:26 | 1 | |||||||||||
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Sustainable Grazing System Pasture Model Resource Report Resource Website |
Sustainable Grazing System Pasture Model (RRID:SCR_021854) | simulation software, software resource, software application | Software tool as biophysical simulation model for livestock systems. It has flexible interface for setting up and running simulations with extensive graphical and data output. | simulation model, livestock systems | Free, Available for download, Freely available | SCR_021854 | SGS Pasture Model | 2026-08-18 09:45:36 | 0 | ||||||||||
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Million Veteran Program Resource Report Resource Website 100+ mentions |
Million Veteran Program (RRID:SCR_021731) | MVP | data or information resource, portal, topical portal | National research program to learn how genes, lifestyle, and military exposures affect health and illness. | Genomic dataset, genes, lifestyle, military exposures, affect health, affect illness | Free, Freely available | SCR_021731 | 2026-08-18 09:45:21 | 273 | ||||||||||
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PlaForNEA Resource Report Resource Website |
PlaForNEA (RRID:SCR_022027) | simulation software, software resource, software application | Software allows estimating growth and production at stand level of main forest species implanted in Argentine Mesopotamia such as Pino taeda, Eucalyptus grandis, Pino elliottii and Araucaria angustifolia. Areas for which models were adjusted correspond to province of Misiones, northeast of Corrientes and Concordia in province of Entre Ríos. | estimating growth and production, forest species, Argentine Mesopotamia | Free, Available for download, Freely available | https://plafornea.software.informer.com/ | SCR_022027 | PLAFORNEA | 2026-08-18 09:45:26 | 0 | |||||||||
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SimulaBeta Resource Report Resource Website 1+ mentions |
SimulaBeta (RRID:SCR_021900) | simulation software, software resource, software application | Software tool as simulation program for insulin glucose feedback control. Based on nonlinear MiMe-NoCoDI model. | Open source, insulin, glucose, simulation, modelling, model, beta cell, homeostasis |
uses: CyberUnits is related to: SPINA Carb is related to: SimThyr has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany has parent organization: Ulm University; Baden-Wurttemberg; Germany |
Deutsche Forschungsgemeinschaft (DFG) GRK 1041; Open Access Publication Funds of the Ruhr-Universität Bochum ; Germany ; Ministry of Education (MOE) Singapore |
PMID:36271244 | Free, Available for download, Freely available | DOI:10.5281/zenodo.4922800 | https://doi.org/10.5281/zenodo.4922800 | SCR_021900 | 2026-08-18 09:45:41 | 2 | ||||||
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Sample Size Shop Resource Report Resource Website 1+ mentions |
Sample Size Shop (RRID:SCR_021747) | data or information resource, portal, topical portal | Platform for multilevel and longitudinal data.Provide researchers such as behavioral and social scientists with tools and education related to study design including Calculating power and sample size for any univariate or multivariate test for general linear multivariate model, assuming fixed predictors;Producing confidence intervals on power estimates for designs with fixed predictors;Producing power calculations for designs with single Gaussian covariate;Supporting designs with unequal group sizes, and complicated covariance structures;Creating basic power curves. | multilevel data, longitudinal data, calculating power and sample size, producing confidence intervals on power estimates, producing power calculations, creating basic power curves | Free, Freely available | SCR_021747 | 2026-08-18 09:45:35 | 4 | |||||||||||
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MDAR Resource Report Resource Website |
MDAR (RRID:SCR_022038) | data or information resource, portal, topical portal | MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals. | methods, Materials Design Analysis Reporting, requirements in transparent reporting, manuscript, journal, harmonizing principle for reporting | PMID:33893240 | Free, Freely available | https://www.incf.org/mdar, https://mfr.osf.io/render?url=https://osf.io/xfpn4/?direct%26mode=render%26action=download%26mode=render | SCR_022038 | Materials Design Analysis Reporting | 2026-08-18 09:45:43 | 0 |
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