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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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TinderMIX Resource Report Resource Website 1+ mentions |
TinderMIX (RRID:SCR_018364) | data analysis software, data processing software, software application, software resource | Software tool as framework for dose and time dependent gene expression analysis which aims to identify groups of genes that show dynamic dose response behaviour. Software R package to cluster gene expression by contour plots. Used to analyse toxicogenomics data with multiple dose levels and time points and to identify expression patterns with respect to both variables and to cluster molecular features. | Dose dependent gene expression, time dependent gene expression, gene expression analysis, dose response, cluster gene expression, contour plot, toxicogenomics data analysis, time point, dose level, expression pattern identification, data | Free, Available for download, Freely available | https://rdrr.io/github/angy89/TinderMIX/, https://github.com/angy89/TinderMIX/ | SCR_018364 | SciCrunch Registry | Time-Dose INtegrated moDelling of toxicogenomics data | 2026-10-24 12:47:56 | 1 | |||||||||
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PredGPI Resource Report Resource Website 10+ mentions |
PredGPI (RRID:SCR_018363) | analysis service resource, data access protocol, data or information resource, production service resource, service resource, software resource, web service | Prediction system for GPI-anchored proteins. Used to predict presence of GPI-anchor and position of omega site. Prediction server based on support vector machine for discrimination of anchoring signal, and on Hidden Markov Model for prediction of most probable omega site. Method for screening whole proteomes. | GPI anchored protein predictor, GPI anchored protein, predict presence of GPI anchor, predict position of omega site, discrimination of anchoring signal, prediction of probable omega site, data, screening whole proteome | European Union VI Framework Programme ; FIRB 2003 LIBI–International Laboratory of Bioinformatics |
PMID:18811934 | Free, Freely available | SCR_018363 | SciCrunch Registry | 2026-10-24 12:47:56 | 22 | |||||||||
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STARANISO Resource Report Resource Website 50+ mentions |
STARANISO (RRID:SCR_018362) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server for anisotropy of diffraction limit and Bayesian estimation of structure amplitudes by Global Phasing Limited. Server uses DEBYE and STARANISO software to perform anisotropic cut off of merged intensity data, to perform Bayesian estimation of structure amplitudes and to apply anisotropic correction to data. | Anisotropy, diffraction limit, Bayesian estimation, structure amplitude, Global Phasing Limited, anisotropic cut off, data, anisotropic correction data | Global Phasing Consortium | Free, Freely available | SCR_018362 | SciCrunch Registry | The STARANISO Server, STARANISO Server, STARANISO server | 2026-10-24 12:47:56 | 78 | |||||||||
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Fluidigm: C1 Single-Cell Automated Preparation System Resource Report Resource Website |
Fluidigm: C1 Single-Cell Automated Preparation System (RRID:SCR_018578) | instrument resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 14,2023.Automated preparation system that isolates and prepares single cell templates for analysis. It can analyze mRNA and DNA sequencing, epigenetics or miRNA expression. It can extract, reverse transcribe, amplify, and analyze gene expression. | Single-Cell Auto Prep System, Instrument, Equipment, Fluidigm, USEDit, ABRF | is listed by: USEDit | THIS RESOURCE IS NO LONGER IN SERVICE | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018578.pdf | SCR_019930, Model_Number_C1 | https://asrc.gc.cuny.edu/instruments/c1-single-cell-autoprep-system/, https://alab.com.pl/produkt-plik/138/2191/MF_Brochure_FY14_C1System_PN100-5477-C1.pdf | SCR_018578 | SciCrunch Registry | 2026-10-24 12:47:59 | 0 | |||||||
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Leica: SM2000 R Sliding microtome Resource Report Resource Website 1+ mentions |
Leica: SM2000 R Sliding microtome (RRID:SCR_018456) | instrument resource | Sliding microtome from Leica Biosystems with low maintenance cross roller bearing slideways designed to easily section either paraffin embedded or fixed, frozen specimens. Features knife holder for both standard knives and disposable blades. Please note: this product is discontinued and no longer available for sale. | Microtome, sliding microtome, cross roller bearing slideway, sectioning, paraffing embedded speciment, fixed speciment, frozen speciment, knife holder, equipment, instrument | Restricted | https://rankinbiomed.com/wp-content/uploads/Leica-SM2000R-Brochure.pdf | SCR_018456 | SciCrunch Registry | Leica SM2000R, Leica SM2000 R | 2026-10-24 12:47:57 | 5 | |||||||||
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Thermo Fisher: n125 Homogenizer Resource Report Resource Website |
Thermo Fisher: n125 Homogenizer (RRID:SCR_018576) | instrument resource | Homogenizer with speeds from 8,000 to 30,000 RPM for volumes of up to 100ml. Homogenizer for production of dispersions and emulsions, plant tissues, human tissues, animal tissues, resins, and pigments. | Homogenizer, Instrument, Equipment, Fisher Scientific, USEDit, ABRF | is listed by: USEDit | Commercially available | SCR_019922, Model_Number_n125 | https://assets.fishersci.com/TFS-Assets/LSG/manuals/homogenizer_man.pdf | SCR_018576 | SciCrunch Registry | 2026-10-24 12:47:59 | 0 | ||||||||
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Thermo Fisher: Isotemp 280A Vacuum Oven Resource Report Resource Website 1+ mentions |
Thermo Fisher: Isotemp 280A Vacuum Oven (RRID:SCR_018575) | instrument resource | Fisher Scientific Isotemp 280A is a Vacuum Oven offers a temperature range from ambient up to 200C with internal dimensions of 11.125"D x 9.75"W x 9.75"H. Front-mounted power indicator and dial thermometer with top-mounted analog vacuum gauge. The 280A's hydraulic thermostat controls temperature. Large glass panel front door and stainless steel chamber. | Isotemp, Vacuum Oven, Instrument Equipment, USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_020143.pdf | Model_Number_280A, SCR_020143 | https://www.marshallscientific.com/v//vspfiles/files/manuals/FS280A.pdf, http://liu.umd.edu/files/280%20A%20oven.pdf | SCR_018575 | SciCrunch Registry | 2026-10-24 12:47:59 | 9 | ||||||||
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Stan Resource Report Resource Website 100+ mentions |
Stan (RRID:SCR_018459) | programming language, simulation software, software application, software resource | Probabilistic programming language for specifying statistical models. Defines log probability function over parameters conditioned on specified data and constants. Platform for statistical modeling and high performance statistical computation. Provides full Bayesian inference for posterior expectations including parameter estimation and posterior predictive inference by defining appropriate derived quantities of interest. | Statistical model specification, statistical modeling, statistical computation, log probability function, parameter, data, constant, parameter estimation | DOI:1509.07164 DOI:10.18637/jss.v076.i01 |
Free, Available for download, Freely available | SCR_018459 | SciCrunch Registry | 2026-10-24 12:47:57 | 221 | ||||||||||
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Pilot: 9W Pilot Diode Laser Resource Report Resource Website 1+ mentions |
Pilot: 9W Pilot Diode Laser (RRID:SCR_018458) | instrument resource | Diode laser, 810 nm wavelength with manufacturer from CAO group, USA. Commodity code: 002-00102. Used for rehabilitation procedures to promote healing, reduce pain and inflammation. | Diode laser, CAO group, ChiropracticOutfitters, 810 nm wavelength | Restricted | SCR_018458 | SciCrunch Registry | PILOT (TM) Diode laser | 2026-10-24 12:47:57 | 1 | ||||||||||
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Gilson: GX-271 HPLC System Resource Report Resource Website |
Gilson: GX-271 HPLC System (RRID:SCR_018579) | instrument resource | HPLC liquid handler with midsize bed capacity and fraction collector. It has maximum flow rates up to 200 mL per min, injection loop volumes of 2 uL to 25 mL, and max sample mass of 15 grams per injection. | HPLC System, Instrument, Equipment, USEDit, Gilson, ABRF | is listed by: USEDit | SCR_019963, Model_Number_GX_271 | SCR_018579 | SciCrunch Registry | 2026-10-24 12:47:59 | 0 | ||||||||||
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LUNGevity Resource Report Resource Website 1+ mentions |
LUNGevity (RRID:SCR_018570) | data or information resource, funding resource, organization portal, portal | Portal dedicated to funding lung cancer research by LUNGevity Foundation. Supports patient focused research and convene multi stakeholder meetings to streamline research process and accelerate progress to patients. Seeks to empower patients to be active decision makers in their treatment process through educational resources, online peer-to-peer support, and in-person survivorship programs. | Funding lung cancer, funding, lung cancer, LUNGevity Foundation, patient focused research support | lung cancer | Restricted | SCR_018570 | SciCrunch Registry | 2026-10-24 12:47:59 | 3 | ||||||||||
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Leica: VT1200S vibratome Resource Report Resource Website 10+ mentions |
Leica: VT1200S vibratome (RRID:SCR_018453) | instrument resource | Fully automated Leica VT1200 S vibrating blade microtome designed for sectioning for cutting fresh and fixed tissue in neuroscience by Leica Biosystems. | Vibrating blade microtome, vibratome, sectioning, cutting, fresh tissue, fixed tissue, instrument, equipment | Restricted | https://www.leicabiosystems.com/sites/default/files/media_product-download/2021-03/Leica_VT1200S_IFU_1v7J_en.pdf | SCR_018453 | SciCrunch Registry | Leica VT1200 S vibrating blade microtome, Leica VT1200S | 2026-10-24 12:47:57 | 39 | |||||||||
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Precisionary: Compresstome VF-300 Resource Report Resource Website 1+ mentions |
Precisionary: Compresstome VF-300 (RRID:SCR_018452) | instrument resource | Vibrating microtome for cutting tissue slices, similar to cryostats and vibrating microtomes. Fully automated for sectioning fixed and live tissues, with down to 1 um precision. Can cut tissue slice thicknesses ranging from 3 um to 2000 um, at 1 um intervals. | Vibrating microtome, cutting tissue slice, automated, fixed tissue, live tissue, tissue slice, instrument, equipment | Restricted | SCR_018452 | SciCrunch Registry | Compresstome VF-300 vibrating microtome | 2026-10-24 12:47:57 | 1 | ||||||||||
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Intensity Ratio Nuclei Cytoplasm Tool Resource Report Resource Website 10+ mentions |
Intensity Ratio Nuclei Cytoplasm Tool (RRID:SCR_018573) | data processing software, image analysis software, image processing software, software application, software resource | Software tool to calculate ratio of intensity in nuclei and cytoplasm. It needs two images as input cytoplasm channel and nuclei channel. | Intensity ratio, nuclei, cytoplasm, image, cytoplasm channel, nuclei channel, calculate ration, ImageJ | works with: ImageJ | Free, Freely available | SCR_018573 | SciCrunch Registry | 2026-10-24 12:47:59 | 37 | ||||||||||
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Custom made 30 kDa microdialysis probe Resource Report Resource Website 1+ mentions |
Custom made 30 kDa microdialysis probe (RRID:SCR_018571) | instrument resource | Probe uses semi permeable membrane with pore size of 30 kDa which enables small hydrophilic compounds from brain extracellular space to diffuse passively into perfusate. Used to measure extracellular ACh level and glucose metabolites directly without purification. | PMID:25172804 | Restricted | SCR_018571 | SciCrunch Registry | 2026-10-24 12:47:59 | 2 | |||||||||||
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BioVelocity Resource Report Resource Website 1+ mentions |
BioVelocity (RRID:SCR_018501) | alignment software, data analysis software, data processing software, image analysis software, sequence analysis software, software application, software resource | Software tool based on hashing algorithm and approach to genomic reference indices from Noblis. Used to indexing genomic references. Aligns reads on reference genomes at random positions where k-mer indexes are matched with reference genomes. | Hashing algorithm, genomic reference indices, Noblis, indexing genomic reference, align reads, reference genome, random position, k-mer index, index match reference genome | Restricted | SCR_018501 | SciCrunch Registry | 2026-10-24 12:47:58 | 2 | |||||||||||
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Luminex: Amnis ImageStreamX Mk II System Resource Report Resource Website 100+ mentions |
Luminex: Amnis ImageStreamX Mk II System (RRID:SCR_018589) | instrument resource | Bench top multispectral imaging flow cytometer designed for the acquisition of up to 12 channels of cellular imagery. It combines per cell information with statistical significance of sample sizes of standard flow cytometry. | Benchtop Flow Cytometer, Instrument, Equipment, imaging flow cytometer, USEDit, Luminex | is listed by: USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018589.pdf | SCR_020244, SCR_020142, Model_Number_ImageStreamX_MkII | https://www.unthsc.edu/research/wp-content/uploads/sites/21/AMNIS-Imagestream.pdf | https://www.luminexcorp.com/imagestreamx-mk-ii/ | SCR_018589 | SciCrunch Registry | , Luminex ImageStream MkII Multispectral Imaging Flow Cytometer, MkII imaging flow cytometer, Luminex ImageStream MkII Flow Cytometer, Luminex Amnis ImageStream MkII Multispectral Imaging Flow Cytometer | 2026-10-24 12:47:59 | 133 | |||||
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ReproNim/containers Resource Report Resource Website 1+ mentions |
ReproNim/containers (RRID:SCR_018467) | data or information resource, knowledge environment resource, narrative resource, portal, software resource, software toolkit, training material, workflow | Software containerized environments for reproducible neuroimaging. Part of ReproNim - Center for Reproducible Neuroimaging Computation. DataLad dataset with collection of popular computational tools provided within ready to use containerized environments. | Containerized environment, reproducible neuroimaging, ReproNim, neuroimaging, dataset, DataLad, imaging, data | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | German Federal Ministry of Education and Research ; NIBIB P41 EB019936; NSF 1429999 |
Free, Freely available | https://github.com/ReproNim/containers | SCR_018467 | SciCrunch Registry | 2026-10-24 12:47:57 | 1 | ||||||||
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Codon Usage Analyzer Resource Report Resource Website |
Codon Usage Analyzer (RRID:SCR_018500) | Bio::CUA, Bio-CUA | data analysis software, data processing software, software application, software resource | Software tool as flexible and comprehensive codon usage analyzer. Used to analyze codon usage bias (CUB) and relevant problems. | Codon usage analyzer, codon, codon usage bias, genome, gene, codon, sequence | has parent organization: University of Rochester; New York; USA | David and Lucile Packard Foundation ; University of Rochester |
DOI:10.1101/022814 | Free, Freely available | https://metacpan.org/release/Bio-CUA | SCR_018500 | SciCrunch Registry | 2026-10-24 12:47:58 | 0 | ||||||
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SpoTyping Resource Report Resource Website 10+ mentions |
SpoTyping (RRID:SCR_018466) | data analysis software, data processing software, software application, software resource | Software tool for fast and accurate in silico Mycobacterium spoligotyping from sequence reads. | bio.tools |
is listed by: bio.tools is listed by: Debian |
National University of Singapore ; Singapore ; Singapore |
DOI:10.1186/s13073-016-0270-7 | Free, Available for download, Freely available | biotools:spotyping | https://bio.tools/spotyping | SCR_018466 | SciCrunch Registry | SpoTyping-v2.0, SpoTyping | 2026-10-24 12:47:57 | 12 |
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