Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://dissect-trans.sourceforge.net/Home
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Software transcriptome-to-genome alignment tool, which can identify and characterize transcriptomic events such as duplications, inversions, rearrangements and fusions.
Proper citation: Dissect (RRID:SCR_000058) Copy
https://www.olympus-lifescience.com/data/olympusmicro/brochures/pdfs/ix71.pdf?rev=EABE
Research inverted system microscope. Olympus IX2 inverted microscope combined with UIS2 optical system. Used for live cell experiments.
Proper citation: Olympus: IX71 Microscope (RRID:SCR_022185) Copy
http://www.mbfbioscience.com/neurolucida
Neurolucida is advanced scientific software for brain mapping, neuron reconstruction, anatomical mapping, and morphometry. Since its debut more than 20 years ago, Neurolucida has continued to evolve and has become the worldwide gold-standard for neuron reconstruction and 3D mapping. Neurolucida has the flexibility to handle data in many formats: using live images from digital or video cameras; stored image sets from confocal microscopes, electron microscopes, and scanning tomographic sources, or through the microscope oculars using the patented LucividTM. Neurolucida controls a motorized XYZ stage for integrated navigation through tissue sections, allowing for sophisticated analysis from many fields-of-view. Neurolucidas Serial Section Manager integrates unlimited sections into a single data file, maintaining each section in aligned 3D space for full quantitative analysis. Neurolucidas neuron tracing capabilities include 3D measurement and reconstruction of branching processes. Neurolucida also features sophisticated tools for mapping delineate and map anatomical regions for detailed morphometric analyses. Neurolucida uses advanced computer-controlled microscopy techniques to obtain accurate results and speed your work. Plug-in modules are available for confocal and MRI analysis, 3D solid modeling, and virtual slide creation. The user-friendly interface gives you rapid results, allowing you to acquire data and capture the full 3D extent of neurons and brain regions. You can reconstruct neurons or create 3D serial reconstructions directly from slides or acquired images, and Neurolucida offers full microscope control for brightfield, fluorescent, and confocal microscopes. Its added compatibility with 64-bit Microsoft Vista enables reconstructions with even larger images, image stacks, and virtual slides. Adding the Solid Modeling Module allows you to rotate and view your reconstructions in real time. Neurolucida is available in two separate versions Standard and Workstation. The Standard version enables control of microscope hardware, whereas the Workstation version is used for offline analysis away from the microscope. Neurolucida provides quantitative analysis with results presented in graphical or spreadsheet format exportable to Microsoft Excel. Overall, features include: - Tracing Neurons - Anatomical Mapping - Image Processing and Analysis Features - Editing - Morphometric Analysis - Hardware Integration - Cell Analysis - Visualization Features Sponsors: Neurolucida is supported by MBF Bioscience.
Proper citation: Neurolucida (RRID:SCR_001775) Copy
https://www.research.uky.edu/uploads/zeiss-palm-microcapture-manual
PALM MicroBeam scanning electron microscope for isolating uncontaminated source material simple.
Proper citation: Zeiss: PALM MicroBeam PALM (RRID:SCR_020929) Copy
https://www.biocompare.com/12104-Equipment/4462209-Axio-Scan-Z1-Slide-Scanner/
Used to digitize specimens with the Axio Scan.Z1 slide scanner to create high-quality virtual slides. Axio Scan.Z1 tackles the most demanding virtual microscopy research tasks as easily as it handles your routine work. The software module ZEN slidescan is designed specifically for the workflow of capturing virtual slides, while ZEN image analysis tools prepare your data accurately. Organize your virtual slides with ZEN browser, the web-based database, then view your data from any location using any operating system , or share virtual microscopy images online with colleagues and organize your projects, even when you are on the go.
Proper citation: Zeiss: Axio Scan.Z1 Slide Scanner (RRID:SCR_020927) Copy
https://www.fishersci.co.uk/shop/products/stemi-2000-c-stereo-microscope/12807795
Optical stereomicroscope with 7.7:1 zoom range (pancratic system 0.65x to 5.0x) zooms in continuously or with click stop. It has an object field size of 35mm, with an 0.3x attachment lens system permitting object fields of up to 118mm to be viewed.
Proper citation: Zeiss: 2000C Stereomicroscope (RRID:SCR_020924) Copy
https://www.wyatt.com/products/instruments/optilab-refractive-index-detector.html#optilab-2
Refractometer based on semiconductor photodiode technology and proprietary computer algorithms. Can be used for standard chromatographic applications and measurements such as high concentrations, determination of sample refractive increments dn dc and solvent refractive index.
Proper citation: Wyatt: Optiab Refractometer (RRID:SCR_020897) Copy
http://www.speciation.net/Database/Instruments/Carl-Zeiss-AG/Supra-25-;i665
Field scanning electron microscope with analytical specimen chamber with choice of optional detectors and accessories. It has 5-axes motorised cartesian stage can handle multiple smaller specimens simultaneously. It can image bulky or irregular shaped specimens.
Proper citation: Zeiss: Supra 25 Field Emission Scanning Electron Microscope (RRID:SCR_020930) Copy
Dynamic Light Scattering device that may be utilized to measure not just size, size distributions, particle concentration and weight average molar mass, but also solution properties relevant to sample stability.cuvette-based DLS instrument used for the analysis of proteins, promiscuous inhibitors, micelles, quantum dots, liposomes, metallic nanoparticles and more.
Proper citation: Wyatt: DynaPro NanoStar Dynamic Light Scattering Detector (RRID:SCR_020898) Copy
https://www.wyatt.com/products/instruments/dynamic-electrophoretic-light-scattering-detectors.html
Dynamic Light Scattering device DLS measures electrophoretic light scattering ELS and DLS simultaneously to determine zeta potential or molecular charge, automated by autosampler or manually, under wide range of solvents.
Proper citation: Wyatt: Mobius Dynamic Light Scatterer (RRID:SCR_020894) Copy
https://bioconductor.org/packages/fgsea/
Software R package for fast preranked gene set enrichment analysis. Allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.
Proper citation: fgsea (RRID:SCR_020938) Copy
Portal enables browsing, searching, and analysis of human genetic information linked to common metabolic diseases and traits, while protecting integrity and confidentiality of underlying data. Aggregates and analyzes genetic association results, epigenomic annotations, and results of computational prediction methods to provide data, visualizations, and tools in open access portal.
Proper citation: Common Metabolic Diseases Knowledge Portal (RRID:SCR_020937) Copy
https://CRAN.R-project.org/package=ez
Software statistical analysis R package used for easy analysis and visualization of factorial experiments. Provides interface to common analysis techniques, including analysis of variance and mixed effects modeling. Visualization functions also include design visualization for pre-analysis data auditing, and correlation matrix visualization. Package includes functions for non-parametric analysis, including permutation tests and bootstrap resampling.
Proper citation: ez (RRID:SCR_020990) Copy
https://scicrunch.org/browse/resourcesedit/SCR_018370
Immunoassay system analyzer by Beckman Coulter with standardized test menus, assay protocols, instrument processes and reference ranges. Sample types include serum, plasma, urine, amniotic fluid, and whole blood.
Proper citation: Beckman Coulter: UniCel DxI 800 Access Immunoassay System (RRID:SCR_020867) Copy
https://www.wyatt.com/products/instruments/microviscostar.html
microViscoStar incorporates multiple novel technologies to provide highest sensitivity, stability and solvent compatibility of any available viscometer for UHPLC. Its ease of use and serviceability make it companion for Wyatt's microDAWN light scattering and microOptilab refractive index detectors for UHPLC.
Proper citation: Wyatt: microViscostar Viscometer (RRID:SCR_020900) Copy
Lab automated tool that automates applications from simple instrument loading to more complex, integrated workflows (with Plate Storage Only)
Proper citation: Thermo Fisher: VaLet Robot; Lab Automation (RRID:SCR_020865) Copy
Refirgerated/heated bath circulator that delivers high heating and cooling capacities for rapid heat-up and cool-down times and has electrical requirements of 200/230 V 60 Hz 200 V 50 Hz
Proper citation: Thermo Fisher: Ultra-low Temp G50 AC200 208-230 VOLT 60 HZ; Refrigerated/Heated Bath Circulator (RRID:SCR_020862) Copy
TBS-380 Mini-Fluorometer is a dual-channel fluorometer designed for quick, easy, and accurate fluorescence measurements. When properly calibrated with a standard of known concentration, the TBS380 displays the actual concentration of the measured compound. The new Minicell adaptor design enables the user to measure compounds at a low concentration with a low assay volume (e.g. dsDNA at 1ng/mL using PicoGreen, and RNA at 1 ng/mL using RiboGreen).
Proper citation: Turner BioSystems: TBS-380 Fluorometer (RRID:SCR_020863) Copy
https://github.com/mlinderm/npsv
Software Python tool for standalone genotyping of deletion and insertion structural variants in short read whole genome sequencing data. Implements machine learning based approach for SV genotyping that employs NGS simulation to model the combined effects of the genomic region, sequencer and alignment pipeline.
Proper citation: NPSV (RRID:SCR_020984) Copy
https://github.com/r3fang/SnapATAC
Software package for analyzing scATAC-seq datasets.Used to dissects cellular heterogeneity in unbiased manner and map trajectories of cellular states. Can process data from up to million cells. Incorporates existing tools into comprehensive package for analyzing single cell ATAC-seq dataset.
Proper citation: SnapATAC (RRID:SCR_020981) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within dkNET that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
