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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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BioWiki Resource Report Resource Website 1+ mentions |
BioWiki (RRID:SCR_000629) | data or information resource, database, portal | A meta-list that is a compilation of other biology related wikipedia pages. These listings include the wiki name, description, year of inception, pages, new pages, users, active users, new edits, and wiki logo. The table can also be downloaded in a csv formatted table. | biology wiki, wiki, wikipedia, downloadable, table | has parent organization: Bioinformatics Organization | Public | nif-0000-06715 | SCR_000629 | SciCrunch Registry | 2026-10-24 12:49:46 | 1 | |||||||||
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Wavelet-based Image Fusion Resource Report Resource Website 1+ mentions |
Wavelet-based Image Fusion (RRID:SCR_002007) | Wavelet-based Image Fusion | data processing software, software application, software resource, software toolkit | Matlab toolbox that implements the wavelet-based image fusion technique for orthogonal images, introduced in (Aganj et al, MRM 2012). | magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:21761448 | Free, Available for download, Freely available | nlx_156018 | SCR_002007 | SciCrunch Registry | 2026-10-24 12:49:49 | 2 | |||||||
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Ontario Ministry of Research and Innovation; Ontario; Canada Resource Report Resource Website 1+ mentions |
Ontario Ministry of Research and Innovation; Ontario; Canada (RRID:SCR_000989) | ORFAB | funding resource, regional funding resource | Ministry that supports research, commercialization and innovation taking place across Ontario through a range of programs and services like the Ontario Research Fund, Innovation Demonstration Fund and Ontario Venture Capital Fund. | is parent organization of: Ontario Centres of Excellence | nlx_157929 | https://www.ontario.ca/ministry-research-innovation | SCR_000989 | SciCrunch Registry | Ontario Ministry of Research and Innovation | 2026-10-24 12:49:47 | 2 | ||||||||
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CDC Toxprofiles Resource Report Resource Website 100+ mentions |
CDC Toxprofiles (RRID:SCR_000900) | data or information resource, database, portal | A database of information about contaminants found at hazardous waste sites. The toxicological profiles are cataloged by chemical with the NTIS order number. | toxic, toxicological, chemical, hazardous waste, contaminants, cdc, FASEB list | has parent organization: Centers for Disease Control and Prevention | nlx_156852 | SCR_000900 | SciCrunch Registry | 2026-10-24 12:49:46 | 149 | ||||||||||
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Netherlands Organization for Scientific Research Resource Report Resource Website 100+ mentions |
Netherlands Organization for Scientific Research (RRID:SCR_000988) | NWO | data or information resource, funding resource, portal, regional funding resource | Netherlands Organization for Scientific Research (NWO) is a research institute and regional funding source in the Netherlands. | nwo, the netherlands, neternlands research institute, netherlands organization, netherlands government, netherlands granting agency | nlx_151487 | SCR_000988 | SciCrunch Registry | Netherlands Organization for Scientific Research | 2026-10-24 12:49:46 | 221 | |||||||||
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Maitreya Dunham's Lab Resource Report Resource Website 1+ mentions |
Maitreya Dunham's Lab (RRID:SCR_000784) | data or information resource, portal | A portal for Maitreya Dunham's lab, which works on the genomic analysis of experimental evolution in yeast using microarrays and the chemostat. Research interests of the lab include experimental evolution of genetic networks in yeast, aneuploidy and copy number variation, comparative genomics, technology development and human genetics in yeast. | seattle, washington, maitreya dunham, lab, yeast, genomic, microarray, chemostat, copy number variation, human, genetics, technology | has parent organization: University of Washington; Seattle; USA | NIH P50 GM071508; Lewis-Sigler Institute ; Howard Hughes Medical Institute |
nif-0000-30476 | SCR_000784 | SciCrunch Registry | The Dunham Lab | 2026-10-24 12:49:46 | 9 | ||||||||
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Helen Wills Neuroscience Institute Resource Report Resource Website |
Helen Wills Neuroscience Institute (RRID:SCR_001991) | data or information resource, graduate program resource, portal | Portal for UC Berkeley's neuroscience research center. The group focuses on interdisciplinary collaboration between neuroscientists and members of UC Berkeley programs in engineering, chemistry, statistics, and computation. It also runs the neuroscience PhD program. | neuroscience, graduate, phd, research | has parent organization: University of California at Berkeley; Berkeley; USA | nif-0000-10720 | SCR_001991 | SciCrunch Registry | 2026-10-24 12:49:47 | 0 | ||||||||||
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Mindboggle Resource Report Resource Website 100+ mentions |
Mindboggle (RRID:SCR_002438) | Mindboggle | data processing software, software application, software resource | Mindboggle (http://mindboggle.info) is open source software for analyzing the shapes of brain structures from human MRI data. The following publication in PLoS Computational Biology documents and evaluates the software: Klein A, Ghosh SS, Bao FS, Giard J, Hame Y, Stavsky E, Lee N, Rossa B, Reuter M, Neto EC, Keshavan A. (2017) Mindboggling morphometry of human brains. PLoS Computational Biology 13(3): e1005350. doi:10.1371/journal.pcbi.1005350 | analyze, anatomic, atlas application, console (text based), labeling, python, magnetic resonance, os independent, region of interest, segmentation, brain, label, mri, anatomy, cerebral cortex, human brain, parcellation, morphometry, shape measures, cortical thickness, cortical depth, Laplace-Beltrami spectra, Zernike moments | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | NIMH MH084029-02 | Free, Available for download, Freely available | nlx_155813 | http://www.nitrc.org/projects/mindboggle | SCR_002438 | SciCrunch Registry | 2026-10-24 12:49:49 | 246 | ||||||
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AtGenExpess - Weigel World Resource Report Resource Website 10+ mentions |
AtGenExpess - Weigel World (RRID:SCR_000777) | data or information resource, portal | A visualization tool with microarray data and sample descriptions from the AtGenExpress project, which contains Affymetrix microarray data for Arabidopsis, a small flowering plant related to mustard and cabbage. This plant is used as a model organism in plant biology. | visualization, microarray, arabidopsis, plant, biology, model, thale cress, arabidopsis thaliana | has parent organization: Max Planck Institute for Developmental Biology; Tubingen; Germany | PMID:17376166 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30128 | http://www.weigelworld.org/research/projects/resources/microarray/AtGenExpress/ | SCR_000777 | SciCrunch Registry | AtGenExpess, AtGenExpess Weigel World, AtGenExpress Visualization Tool | 2026-10-24 12:49:47 | 20 | ||||||
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EuMMCR Resource Report Resource Website 10+ mentions |
EuMMCR (RRID:SCR_001506) | EuMMCR | biomaterial supply resource, cell repository, material resource | Embryonic stem cell distribution unit that distributes material arising within European Conditional Mouse Mutagenesis Program consortium, currently targeting vectors and ES cells. Upon user request EUCOMM grow targeting vectors from glycerol stocks and prepare vector DNA. Identity of vector is verified by restriction mapping. Upon user request EUCOMM thaw, expand and re-freeze several aliquots of desired ES cell clone. Standard controls include PCR based assay. Upon additional request EuMMCR unit develops genotyping PCR, which can be used to genotype chimeric mice that may be generated using those ES cell clones. | embryonic stem cell, vector, experimental protocol, male, dna, genotype |
is used by: EUCOMMTOOLS is listed by: One Mind Biospecimen Bank Listing is related to: European Conditional Mouse Mutagenesis Program has parent organization: Helmholtz Center Munich |
Free, Freely available | nlx_152805 | http://www.eummcr.org/ | SCR_001506 | SciCrunch Registry | EuMMCR - European Mouse Mutant Cell Repository, European Mouse Mutant Cell Repository | 2026-10-24 12:49:47 | 24 | ||||||
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NBDC - National Bioscience Database Center Resource Report Resource Website 1+ mentions |
NBDC - National Bioscience Database Center (RRID:SCR_000814) | NBDC | data or information resource, database, organization portal, portal | The National Bioscience Database Center (NBDC) intends to integrate all databases for life sciences in Japan, by linking each database with expediency to maximize convenience and make the entire system more user-friendly. We aim to focus our attention on the needs of the users of these databases who have all too often been neglected in the past, rather than the needs of the people tasked with the creation of databases. It is important to note that we will continue to honor the independent integrity of each database that will contribute to our endeavor, as we are fully aware that each database was originally crafted for specific purposes and divergent goals. Services: * Database Catalog - A catalog of life science related databases constructed in Japan that are also available in English. Information such as URL, status of the database site (active vs. inactive), database provider, type of data and subjects of the study are contained for each database record. * Life Science Database Cross Search - A service for simultaneous searching across scattered life-science databases, ranging from molecular data to patents and literature. * Life Science Database Archive - maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata in a unified format, and to access and download the datasets with clear terms of use. * Taxonomy Icon - A collection of icons (illustrations) of biological species that is free to use and distribute. There are more than 200 icons of various species including Bacteria, Fungi, Protista, Plantae and Animalia. * GenLibi (Gene Linker to bibliography) - an integrated database of human, mouse and rat genes that includes automatically integrated gene, protein, polymorphism, pathway, phenotype, ortholog/protein sequence information, and manually curated gene function and gene-related or co-occurred Disease/Phenotype and bibliography information. * Allie - A search service for abbreviations and long forms utilized in life sciences. It provides a solution to the issue that many abbreviations are used in the literature, and polysemous or synonymous abbreviations appear frequently, making it difficult to read and understand scientific papers that are not relevant to the reader's expertise. * inMeXes - A search service for English expressions (multiple words) that appear no less than 10 times in PubMed/MEDLINE titles or abstracts. In addition, you can easily access the sentences where the expression was used or other related information by clicking one of the search results. * HOWDY - (Human Organized Whole genome Database) is a database system for retrieving human genome information from 14 public databases by using official symbols and aliases. The information is daily updated by extracting data automatically from the genetic databases and shown with all data having the identifiers in common and linking to one another. * MDeR (the MetaData Element Repository in life sciences) - a web-based tool designed to let you search, compare and view Data Elements. MDeR is based on the ISO/IEC 11179 Part3 (Registry metamodel and basic attributes). * Human Genome Variation Database - A database for accumulating all kinds of human genome variations detected by various experimental techniques. * MEDALS - A portal site that provides information about databases, analysis tools, and the relevant projects, that were conducted with the financial support from the Ministry of Economy, Trade and Industry of Japan. | life science, research, database, catalog, tool, gene, service, molecule, patent, literature, taxonomy, image, bacteria, fungus, protist, plant, animal, human, mouse, rat, gene, protein, polymorphism, pathway, phenotype, ortholog, protein sequence, gene function, disease, phenotype, bibliography, english expression, human genome, genome, human genome variation, variation, analysis tool |
has parent organization: Japan Science and Technology Agency is parent organization of: Human Variation DB is parent organization of: Japanese Genotype-phenotype Archive (JGA) is parent organization of: ChIP-Atlas |
Japan Science and Technology Agency | nlx_151485 | SCR_000814 | SciCrunch Registry | National Bioscience Database Center, National Bioscience Database Center (NBDC) | 2026-10-24 12:49:46 | 3 | |||||||
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NIDDK Inflammatory Bowel Disease Genetics Consortium Resource Report Resource Website 1+ mentions |
NIDDK Inflammatory Bowel Disease Genetics Consortium (RRID:SCR_001461) | IBDGC, NIDDKIBDGC | biomaterial supply resource, cell repository, material resource | Repository of biospecimen and phenotype data collected from Crohn's disease and ulcerative colitis cases and controls recruited at six sites throughout North America that are available to the scientific community. Phenotyping is performed using a standardized protocol, and lymphoblastoid cell lines are established for each subject. Phenotype data for each subject are collected by the Consortium's Data Coordinating Center (DCC), and phenotype data for all subjects with DNA samples are available. The resulting DNA samples have already been utilized by the Consortium to complete various association studies, including genome-wide association studies using dense genotyping arrays. Researchers can obtain DNA samples and phenotype, genotype, and pedigree data through the Data Repository. GWAS data must be requested through dbGAP. The IBDGC is involved with independent genetic research studies and actively works with members of the IBD and genetic communities on collaborative projects. They are also members of the International IBD Genetics Consortium. Phenotype Tools: The Consortium Phenotype Committee, led by Dr. Hillary Steinhart designed and validated paper forms to collect extensive phenotype data on Crohn's Disease and ulcerative colitis. Consortium phenotype tools are available for use by non-Consortium members. | dna, cell line, serum, lymphocyte, lymphoblastoid cell line, gene, loci, genetic analysis, blood, phenotype, genome-wide association study, genotype, pedigree, metadata standard, genotyping array |
uses: NCBI database of Genotypes and Phenotypes (dbGap) is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: Yale School of Medicine; Connecticut; USA |
Inflammatory Bowel Disease, Crohn's disease, Ulcerative colitis, Control, Family member | NIDDK U01 DK062429 | Free, Freely Available | nlx_152706 | http://medicine.yale.edu/intmed/ibdgc/ | SCR_001461 | SciCrunch Registry | IBD Genetics Consortium, NIDDKIBD Genetics Consortium, Inflammatory Bowel Disease Genetic Consortium | 2026-10-24 12:49:47 | 3 | ||||
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Bern-Barcelona EEG database Resource Report Resource Website 1+ mentions |
Bern-Barcelona EEG database (RRID:SCR_001582) | Bern-Barcelona EEG database | data or information resource, data set, software resource, source code | THIS RESOURCE IS NO LONGER IN SERVICE, documented November 23, 2020; EEG data set, source code, and results from 7500 signal pairs from 5 epilepsy patients analyzed in the manuscript, Andrzejak RG, Schindler K, Rummel C. Nonrandomness, nonlinear dependence, and nonstationarity of electroencephalographic recordings from epilepsy patients. Phys. Rev. E, 86, 046206, 2012. All Matlab source codes are included in the file ASR_Sources_2012_10_16.zip. The clinical purpose of these recordings was to delineate the brain areas to be surgically removed in each individual patient in order to achieve seizure control. | eeg, electroencephalogram, epilepsy, intracranial, eeg recording, signal, analysis, time series, nonlinear, surrogate signal, surrogate, matlab, focal, non-focal, signal | has parent organization: Pompeu Fabra University; Barcelona; Spain | Epilepsy, Pharmacoresistant focal-onset epilepsy, Seizure | Spanish Ministry of Education and Science grant FIS-2010-18204; Swiss National Science Foundation SNF 320030-122010; Swiss National Science Foundation SNF 33CM30-124089 |
PMID:23214662 | Free, Available for download, Freely available | nlx_153819 | http://ntsa.upf.edu/downloads/andrzejak-rg-schindler-k-rummel-c-2012-nonrandomness-nonlinear-dependence-and, http://www.dtic.upf.edu/~ralph/sc/ | SCR_001582 | SciCrunch Registry | 2026-10-24 12:49:47 | 3 | ||||
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Donate Life America Resource Report Resource Website 1+ mentions |
Donate Life America (RRID:SCR_000531) | data or information resource, group, portal | Nonprofit alliance of national organizations and state teams dedicated to increasing organ, eye and tissue donation. Donate Life America manages and promotes the national brand for donation, Donate Life, and assists Donate Life State Teams and national partners in facilitating high-performing donor registries; developing and executing effective multi-media donor education programs; and motivating the American public to registeras organ, eye and tissue donors. | tissue, organ, eye, donor, education, promotion, nonprofit |
is parent organization of: OneLegacy is parent organization of: American Donor Services is parent organization of: LifeShare Transplant is parent organization of: Center for Organ Recovery and Education - CORE is parent organization of: Mid-America Transplant Services is parent organization of: LifeGift Organ Donation Center is parent organization of: Gift of Life Donor Program is parent organization of: New York Organ Donor Network - NYODN is parent organization of: Living Legacy Foundation of Maryland is parent organization of: LifeCenter Organ Donor Network is parent organization of: Upstate New York Transplant Services is parent organization of: LifeBanc is parent organization of: LifeLink Foundation is parent organization of: UNOS - United Network for Organ Sharing is parent organization of: Lifeline of Ohio is parent organization of: NMDS - New Mexico Donor Services is parent organization of: Donate Life Louisiana is parent organization of: Central New York Eye and Tissue Bank |
Public | nlx_63855 | SCR_000531 | SciCrunch Registry | Donate Life Network, Donate Life Organization, Donate Life | 2026-10-24 12:49:46 | 2 | ||||||||
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An efficient P300-based brain-computer interface for disabled subjects Resource Report Resource Website |
An efficient P300-based brain-computer interface for disabled subjects (RRID:SCR_001584) | data or information resource, data set, software resource, source code | A portal containing EEG datasets (in MATLAB format) and the MATLAB software that were used to produce the results in the paper named in the title of this resource. The files published can also be used as a basis for individual research on P300-based brain-computer interfaces. The system is based on the P300 evoked potential and is tested with five severely disabled and four able-bodied subjects. For four of the disabled subjects classification accuracies of 100% are obtained. The bitrates obtained for the disabled subjects range between 10 and 25 bits/min. The effect of different electrode configurations and machine learning algorithms on classification accuracy is tested. | eeg, brain-computer interface, p300, fishers linear discriminant analysis, bayesian linear discriminant analysis, matlab, data set | has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland | Disabled, Able-bodied, Normal | Swiss National Science Foundation 200020-112313 | PMID:17445904 | Free, Available for download, Freely available | nlx_153820 | SCR_001584 | SciCrunch Registry | 2026-10-24 12:49:48 | 0 | ||||||
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UKU Neuroscience and Neurology Links Resource Report Resource Website |
UKU Neuroscience and Neurology Links (RRID:SCR_001733) | data or information resource, information resource, portal | Portal of neuroscience and neurology resources pertaining to the University of Eastern Finland. | neuroscience, neurology, university of eastern finland, public university |
has parent organization: University of Eastern Finland at Kuopio; Kuopio; Finland has parent organization: University of Eastern Finland; Eastern Finland; Finland |
Free | nif-0000-00099 | SCR_001733 | SciCrunch Registry | UKU Neuroscience Links, UKU Neurology Links | 2026-10-24 12:49:47 | 0 | ||||||||
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International Gene Trap Consortium Resource Report Resource Website 10+ mentions |
International Gene Trap Consortium (RRID:SCR_002305) | IGTC | biomaterial supply resource, cell repository, material resource | Consortium represents all publicly available gene trap cell lines, which are available on non-collaborative basis for nominal handling fees. Researchers can search and browse IGTC database for cell lines of interest using accession numbers or IDs, keywords, sequence data, tissue expression profiles and biological pathways, can find trapped genes of interest on IGTC website, and order cell lines for generation of mutant mice through blastocyst injection. Consortium members include: BayGenomics (USA), Centre for Modelling Human Disease (Toronto, Canada), Embryonic Stem Cell Database (University of Manitoba, Canada), Exchangeable Gene Trap Clones (Kumamoto University, Japan), German Gene Trap Consortium provider (Germany), Sanger Institute Gene Trap Resource (Cambridge, UK), Soriano Lab Gene Trap Resource (Mount Sinai School of Medicine, New York, USA), Texas Institute for Genomic Medicine - TIGM (USA), TIGEM-IRBM Gene Trap (Naples, Italy). | embryo, embryonic, gene, genome, allele, analysis, assay, bioinformatics, blastocyst, cell, colony, consortium, genotyping, hybridization, in situ, international, knockout, murine, mutant, mutation, probe, qpcr, researcher, scientist, sequence, stem cell, tagging, trap, vector, cell line, embryonic stem cell line, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is related to: Centre for Modeling Human Disease Gene Trap Resource has parent organization: University of California at San Francisco; California; USA is parent organization of: International Gene Trap Consortium Pathways |
NCRR P41 RR01081 | PMID:16381950 | Restricted | nif-0000-00036 | https://igtc.org/ | SCR_002305 | SciCrunch Registry | International Gene Trap Consortium | 2026-10-24 12:49:49 | 43 | ||||
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McGill Global Health Resource Guide Resource Report Resource Website |
McGill Global Health Resource Guide (RRID:SCR_001096) | data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 15,2025. Wiki of resources useful for researchers and clinicians interested in global health. All McGill faculty, clinicians, researchers, staff and students are encouraged to use and add to these resources. If members of the research community would like to contribute to this resource, but are not a member of the McGill community, the McGill community is available for contact. An account will be created for users. | has parent organization: McGill University; Montreal; Canada | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_29904 | SCR_001096 | SciCrunch Registry | 2026-10-24 12:49:47 | 0 | ||||||||||
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G2P Knowledge Centre Resource Report Resource Website 10+ mentions |
G2P Knowledge Centre (RRID:SCR_000790) | GEN2PHEN | data or information resource, portal, project portal | Portal of GEN2PHEN project, holistic approach to genotype-to-phenotype data. Aims to unify human and model organism genetic variation databases towards increasingly holistic views into Genotype-To-Phenotype (G2P) data, and to link this system into other biomedical knowledge sources via genome browser functionality. | data-sharing enabler, genotype-phenotype, data federation |
is listed by: 3DVC is related to: BioResource Impact Factor |
European Union FP7 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30605, SCR_013704 | SCR_000790 | SciCrunch Registry | GEN2PHEN Knowledge Centre | 2026-10-24 12:49:46 | 16 | ||||||
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Washington University Neuromuscular Disease Center Resource Report Resource Website 10+ mentions |
Washington University Neuromuscular Disease Center (RRID:SCR_002059) | WU Neuromuscular | data or information resource, organization portal, portal | Organization portal for neuromuscular disease community and contains comprehensive listing of biological and clinical aspects of neuromuscular disorders.This knowledge base contains information on the physiology, structure of ion channels, neurotransmitters, neuroreceptors, and associated diseases. Major categories include DISORDERS & SYNDROMES, INDEXES, NEUROMUSCULAR EVALUATION, ANTIBODY TESTING and NEUROMUSCULAR DIVISION. | neuromuscular disease, cerebellum, motor cortex, spinal cord | has parent organization: Washington University in St. Louis; Missouri; USA | Free, Freely available | nif-0000-00158, SCR_007305, nif-0000-12503 | http://neuromuscular.wustl.edu/over/overview.html | http://www.neuro.wustl.edu/neuromuscular/ | SCR_002059 | SciCrunch Registry | Neuromuscular Disease Center | 2026-10-24 12:49:49 | 25 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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