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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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FIONA-protocol-compliance Resource Report Resource Website |
FIONA-protocol-compliance (RRID:SCR_016027) | data processing software, software resource, data analysis software, software application | Software that contains multiple sequential lines of MATLAB commands and function calls for numerical computing for ABCD study protocol compliance. | application, multiple, sequential, lines, commands, function, numerical, computing, protocol, compliance | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016027 | 2026-08-17 09:35:34 | 0 | |||||||||
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statsmodel Resource Report Resource Website 100+ mentions |
statsmodel (RRID:SCR_016074) | data processing software, software resource, data analysis software, software application | Statistical software that provides classes and functions for the estimation of many different models, as well as for conducting statistical tests, and statistical data exploration. The results are tested against existing statistical packages to ensure that they are correct. http://conference.scipy.org/proceedings/scipy2010/seabold.html | python, statistic, estimate, econometric, model, library, class, function, r | Open source, Available for download | SCR_016074 | Statsmodels: Econometric and Statistical Modeling with Python | 2026-08-17 09:35:36 | 253 | ||||||||||
|
MICtools Resource Report Resource Website 10+ mentions |
MICtools (RRID:SCR_016121) | data processing software, software resource, data analysis software, software application | Software which combines the TICe and MICe measures into a two-step procedure that allows to identify relationships of various degrees of complexity in large datasets. TICe is used to perform an efficient high throughput screening of all the possible pairwise relationships and a permutation based approach is used to assess their significance. | tice, mice, dataset, permutation, statistic | Open source | SCR_016121 | Maximal Information Coefficient (MIC) Tools, MIC Tools, Maximal Information Coefficient Tools | 2026-08-17 09:35:37 | 12 | ||||||||||
|
Stimfit Resource Report Resource Website 10+ mentions |
Stimfit (RRID:SCR_016050) | data processing software, software resource, data analysis software, software application | Software for viewing and analyzing electrophysiological data. It features an embedded Python shell that allows you to extend the program functionality by using numerical libraries such as NumPy and SciPy. | electrophysiology, python, numpy, scipy, numerical, library, stimulus, analysis |
uses: NumPy uses: SciPy |
European Research Council ; Wellcome Trust ; Gatsby Charitable Foundation |
PMID:24600389 | Free, Available for download | SCR_016050 | 2026-08-17 09:35:35 | 41 | ||||||||
|
Linear Fascicle Evaluation Resource Report Resource Website 1+ mentions |
Linear Fascicle Evaluation (RRID:SCR_016153) | data processing software, software resource, data analysis software, software application | Software that implements a framework to encode structural brain connectomes into multidimensional arrays (tensors). Encoding Connectomes provides an agile framework for computing over connectome edges and nodes. | connectome, encode, framework, neuroanatomy, tract, dissection, array, tensor, edge, node | requires: MATLAB | NSF IIS-1636893; NSF BCS-1734853; NCATS ULT TR001108; Indiana University Areas of Emergent Research initiative Learning: Brains ; Machines ; Children |
Free, Available for download, Demo available | SCR_016153 | 2026-08-17 09:35:38 | 1 | |||||||||
|
MediBeacon Studio Software Resource Report Resource Website |
MediBeacon Studio Software (RRID:SCR_016252) | data processing software, software resource, data analysis software, software application | Software used to analyze glomerular filtration rate (GFR) measurement from MediBeacon GFR monitor. It is used with the Transdermal Continuous Renal Function Monitor. | nephrology, renal, kidney, gfr, glomerulus, transdermal, skin, measurement | has parent organization: MediBeacon | Commercially available, Comes with device purchase | SCR_016252 | Studio Software, MediBeacon Software, Preclinical Data Studio | 2026-08-17 09:35:40 | 0 | |||||||||
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easyGV Resource Report Resource Website 1+ mentions |
easyGV (RRID:SCR_016260) | data processing software, software resource, data analysis software, software application | Software for calculating different measures of glycaemic variability (GV). It analyzes continuous glucose monitoring data using a simple interface. | glycaemic, glycemia, variability, gv, glucose, diabetes, excel |
has parent organization: University of Oxford; Oxford; United Kingdom is a plug in for: Microsoft Excel |
PMID:21714681 | Free for academic use, Free for non-commercial use, Available for download | SCR_016260 | 2026-08-17 09:35:41 | 5 | |||||||||
|
Mapping Population-based Structural Connectomes Resource Report Resource Website |
Mapping Population-based Structural Connectomes (RRID:SCR_016232) | data processing software, software resource, data analysis software, software application | Data analysis software that can simultaneously characterize a large number of white matter bundles within and across different subjects for group analysis. It has three major components: construction of the structural connectome for the whole brain, low-dimensional representation of streamlines in each connection, and multi-level connectome analysis. | dwi, t1, tractography, algorithm, white matter, bundle, gray matter, shape, analysis, network, workflow | NIMH MH086633; NIMH MH092335; NSF SES-1357666; NSF DMS-1407655; CPRIT RR150054; NSF DMS1127914 |
Free for non-commercial use, Available for download | SCR_016232 | 2026-08-17 09:35:32 | 0 | ||||||||||
|
NExT-EMA Resource Report Resource Website |
NExT-EMA (RRID:SCR_016291) | data processing software, software resource, data analysis software, software application | Software for combined elementary flux mode and network-embedded thermodynamic analysis. | efm, net, thermodynamics, flux, elementary, ema, stoichiometry | PMID:29237121 | Free, Available for download | SCR_016291 | 2026-08-17 09:35:42 | 0 | ||||||||||
|
CATNAP Resource Report Resource Website 10+ mentions |
CATNAP (RRID:SCR_016170) | data processing software, software resource, data analysis software, software application | Analyze a database of HIV-1 IC50 and IC80 neutralization data from publicly-available sources, in conjunction with HIV-1 Envelope sequences. Access to an extensive databases of information about neutralizing antibodies and viruses used in published neutralization studies. Tool interfaces also allow input and analysis of user data. PMID: 26044712, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | database, analysis, | PMID:26044712 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_016170 | CATNAP - Compile Analyze and Tally Neutralizing Antibody Panels | 2026-08-17 09:35:38 | 49 | |||||||||
|
FluxModeCalculator Resource Report Resource Website 1+ mentions |
FluxModeCalculator (RRID:SCR_016290) | data processing software, software resource, data analysis software, software application | Software for performing flux mode analysis in stoichiometric models. FluxModeCalculator enables large-scale elementary flux mode (EFM) computation and uses the OpenMP API to optimally exploit processor architectures with multiple cores., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | efm, flux, stoichiometry, algorithm, matlab, linux, model, magnitude, bio.tools |
is listed by: Debian is listed by: bio.tools |
Netherlands Consortium for Systems Biology (NCSB) ; Center of Medical Systems Biology (CMSB) ; European Network for Genetic and Genomic Epidemiology (ENGAGE) ; Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) ; CardioVascular Research Netherlands (CVON-ENERGISE) |
PMID:26685305 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:fluxmodecalculator, OMICS_10894 | https://bio.tools/fluxmodecalculator | SCR_016290 | Flux Mode Calculator | 2026-08-17 09:35:41 | 1 | |||||
|
GoldWave Resource Report Resource Website 50+ mentions |
GoldWave (RRID:SCR_016189) | data processing software, software resource, data analysis software, software application | Software that enables users to digitally edit audio files. GoldWave can record, edit, and analyze audio for research-related purposes. | audio, sound, analysis, acquisition, visualization, record, edit, analysis, auditory | Commercially available, Available for purchase | SCR_016189 | 2026-08-17 09:35:39 | 88 | |||||||||||
|
FCS Express Resource Report Resource Website 500+ mentions |
FCS Express (RRID:SCR_016431) | data processing software, software resource, data analysis software, software application | Software tool for flow and image cytometry data analysis by De Novo Software company. | flow, image, analysis, data, cytometry, De Novo Software, research, clinical, laboratory | is listed by: SoftCite | Commercially available, Tutorial available | SCR_016431 | 2026-08-17 09:35:45 | 518 | ||||||||||
|
AngioTool Resource Report Resource Website 50+ mentions |
AngioTool (RRID:SCR_016393) | data processing software, software resource, data analysis software, software application | Software that performs quantitative analysis of angiogenesis. It specializes in quantitative assessment of various vessel morphometric and spatial parameters, including vessel length and density, branching index, lacunarity, etc. | vessel, angio, angiogenesis, characteristic, morphology | Biotechnology and Biological Sciences Research Council BB/C520712; MRC G0700740 |
PMID:22110636 | Open source, Free, Available for download | https://www.researchgate.net/publication/51824175_A_Computational_Tool_for_Quantitative_Analysis_of_Vascular_Networks | SCR_016393 | 2026-08-17 09:35:44 | 60 | ||||||||
|
MotionCor2 Resource Report Resource Website 100+ mentions |
MotionCor2 (RRID:SCR_016499) | data processing software, software resource, data analysis software, software application | Software tool for anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Used to describe the sample motion as a local deformation that varies smoothly throughout the exposure. A program running on Linux. | anisotropic, correction, beam, induced, motion, cryo, electron, microscopy, exposure, data | has parent organization: University of California at San Francisco; California; USA | NIH R01 GM031627; NIGMS P01 GM111126 |
PMID:28250466 | Restricted | http://msg.ucsf.edu/em/software/motioncor2.html | SCR_016499 | MotionCor | 2026-08-17 09:35:45 | 186 | ||||||
|
GenPipes Resource Report Resource Website 10+ mentions |
GenPipes (RRID:SCR_016376) | data processing software, software resource, data analysis software, software application | Software for genomics and bioinformatics analysis. GenPipes includes several python pipelines that cover many genomics applications, such as RNASeq, ChIPSeq, DNASeq, WGBS, HiC, Metagenomics, PacBio assembly, etc. | workflow, management, system, genomics, bioinformatics, rnaseq, chipseq, dnaseq, hic, metagenomics, WGBS, PacBio, Assembly, C3G | has parent organization: McGill University; Montreal; Canada | Free, Available for download, Tutorial available | http://www.computationalgenomics.ca/tutorials/ | SCR_016376 | 2026-08-17 09:35:44 | 18 | |||||||||
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MxPro QPCR Resource Report Resource Website 500+ mentions |
MxPro QPCR (RRID:SCR_016375) | data processing software, software resource, data analysis software, software application | Software that performs data analysis algorithms for QPCR data. The software is included with the purchase of the Agilent MxPro QPCR System., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | pcr, qpcr, polymerase, qualitative, analysis, nucleic, acid, gene | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_016375 | MxPro QPCR Software | 2026-08-17 09:35:44 | 543 | ||||||||||
|
Tests for deviation from Hardy-Weinberg equilibrium Resource Report Resource Website 10+ mentions |
Tests for deviation from Hardy-Weinberg equilibrium (RRID:SCR_016496) | data processing software, software resource, data analysis software, software application | Software tool for performing tests for deviation from Hardy-Weinberg equilibrium and tests for association. Used in population-based genetic association studies to identify susceptibility genes for complex diseases. | deviation, Hardy-Weinberg, equilibrium, test, association, population, genetic, identify, susceptibility, gene, disease, single, nucleotide, polymorphisms, snp, allele | SCR_016496 | 2026-08-17 09:35:45 | 18 | ||||||||||||
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Cardiovascular Disease Knowledge Portal Resource Report Resource Website 10+ mentions |
Cardiovascular Disease Knowledge Portal (RRID:SCR_016536) | data or information resource, disease-related portal, database, topical portal, portal | Platform for analysis of the genetics of cardiovascular disease.Used for searching and analysis of human genetic information linked to myocardial infarction, atrial fibrillation and related traits while protecting the integrity and confidentiality of the data. | genetic, data, cardiovascular, disease, human | is listed by: NIDDK Information Network (dkNET) | cardiovascular disease, myocardial infarction, atrial fibrillation | Accelerating Medicines Partnership in Type 2 Diabetes ; National Institute of Cardiovascular Diseases and Stroke |
Free, Available for download, Google ID required, Tutorial available | SCR_016536 | 2026-08-17 09:35:45 | 31 | ||||||||
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kCSD-Matlab Resource Report Resource Website 1+ mentions |
kCSD-Matlab (RRID:SCR_016424) | kCSD | data processing software, software resource, data analysis software, software application | Software tool for analyzing recordings from multielectrodes. Source code for the Matlab implementation of the Kernel Current Source Density method. The method operates in one-, two-, and three-dimensional space to perform nonparametric estimation of transmembrane current sources from local field potentials recorded from arbitrarily distributed electrodes. | analyzing, recording, data, multielectrode, transmembrane, current, source, estimate, kernel, source, density, method | is related to: MATLAB | Free, Available for download, Freely available | SCR_016424 | kernel Current Source Density | 2026-08-17 09:35:35 | 3 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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