Tools   Select Another Resource Report Type

http://wwwdev.ebi.ac.uk/fg/hts_mappers/

Data set providing an up-to-date compendium of HTS mappers initially provided in the article Tools for mapping high-throughput sequencing data. Please let fill out the provided form if you are a developer and your mapper is not listed or you want to update the data for your mapper.

Proper citation: HTS Mappers (RRID:SCR_011991) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/csisp-bioinformatics-biostatistics-csisp

THIS RESOURCE IS NO LONGER IN SERVCE, documented January 24, 2019. Core provides advisory services in study planning and data mining (debugging, analysis and interpretation of results) resulting from the sequencing of DNA and RNA. Core's goal is to help extract all possible information from sequencing data which will be useful for projects. Applications: Sequence trimming and quality control (quality index, length of sequences, etc...). Taxonomic assignment of prokaryotic 16S rDNA sequences. Comparative ecological analysis of environmental and/or clinical microbial communities based on 16S rDNA taxonomy. Assembly and/or annotation of genomes and metagenomes. Transcriptome annotation. Determination of SNPs in resequencing studies in bacterial systems. Sending Data. Sequences can be submitted in any of the usual formats (FASTA, SFF, FASTQ, etc) along with a description of the experimental design (including sufficient details) and the relevant information associated with each sample in order to perform the necessary analyses (factors associated with the samples, sub-samples, etc.).

Proper citation: CSISP Bioinformatics and Biostatistics (RRID:SCR_012287) Copy   

•   Source: SciCrunch Registry

http://www.uwyo.edu/pharmacy/

The University of Wyoming School of Pharmacy was founded in 1946. The school aims to help improve the quality of health care in Wyoming by graduating students who can provide primary pharmaceutical care in a rural and frontier environment, as well as in cities. Students receive a strong background in the pharmaceutical sciences on which to build clinical expertise. Complementing this, early in the curriculum students are exposed to pharmacy practice environments and seminars focusing on contemporary issues. Throughout the curriculum, faculty members integrate the teaching and application of critical-thinking skills, decision-making skills, and professional communication techniques as applied to pharmacy practice. This culminates in the final year with a series of rotations in diverse settings throughout Wyoming, Colorado, and beyond.

Proper citation: University of Wyoming School of Pharmacy (RRID:SCR_011750) Copy   

•   Source: SciCrunch Registry

http://en.wikibooks.org/wiki/Next_Generation_Sequencing

The Need for an Up-To-Date Synthesis of Next Generation Sequencing Know-How.

Proper citation: Next Generation Sequencing WikiBook (RRID:SCR_011993) Copy   

•   Source: SciCrunch Registry

http://i122server.vu-wien.ac.at/CANGS1.1/

A user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.

Proper citation: CANGS (RRID:SCR_011837) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/imperial-college-london

An Portal, Core facility

Proper citation: Imperial College London Labs and Facilities (RRID:SCR_012523) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/newcastle-university

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 15,2024. Portal and core facility. Contains the Bioinformatics Support Unit.

Proper citation: Newcastle University Labs and Facilities (RRID:SCR_012522) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/provincial-health-services-authority

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 25,2024. Portal, Core facility.

Proper citation: Provincial Health Services Authority Labs and Facilities (RRID:SCR_012525) Copy   

•   Source: SciCrunch Registry

http://topaz.gatech.edu/GeneTack/cgi/print_page.cgi?fn=db_home.html&title=Frameshift%20Database

Tools for frameshift prediction and a frameshift database.

Proper citation: GeneTack (RRID:SCR_011953) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/4292

An Portal, Core facility

Proper citation: Vancouver Prostate Centre Labs and Facilities (RRID:SCR_012524) Copy   

•   Source: SciCrunch Registry

http://www.jiffynet.org/

Web based instant protein network modeler for newly sequenced species. Web server designed to instantly construct genome scale protein networks using protein sequence data. Provides network visualization, analysis pages and solution for instant network modeling of newly sequenced species.

Proper citation: JiffyNet (RRID:SCR_011954) Copy   

•   Source: SciCrunch Registry

http://www.biospace.com/

Online community for industry news and careers for life science professionals.

Proper citation: BioSpace (RRID:SCR_012010) Copy   

•   Source: SciCrunch Registry

http://www.usciences.edu/academics/collegesDepts/pcp.aspx

Pharmaceutical education began at Philadelphia College of Pharmacy (PCP), the first such institution in North America. With nearly two centuries of experience in pharmacy and science and thousands of alumni working in the healthcare industry, the world turns to PCP graduates for advice. From undergraduate majors to graduate degrees to our esteemed PharmD program, you can learn where the founders (alumni such as McNeil, Lilly, Rorer, Wyeth, Warner, Burroughs, and Wellcome) of six of the top pharmaceutical companies in the world got their education. Since 1821, they have been preparing professionals in pharmacy practice, science, and health care. There is no better place than PCP to prepare you for a lifelong career in the healthcare industry.

Proper citation: University of the Sciences in Philadelphia College of Pharmacy (RRID:SCR_011728) Copy   

•   Source: SciCrunch Registry

https://github.com/najoshi/sabre

Software tool to demultiplex barcoded reads into separate files. Works on both single-end and paired-end data in fastq format. Used in next generation sequencing to analyze a broad range of data.

Proper citation: sabre (RRID:SCR_011843) Copy   

•   Source: SciCrunch Registry

http://tfclass.bioinf.med.uni-goettingen.de/tfclass

Database that classifies human transcription factors based on the characteristics of their DNA-binding domains. It comprises six levels (superclasses, classes, families, subfamilies, genera and factor species), two of which are optional (subfamilies and factor species). The full classification can also be obtained as html document and as ontology in obo-format., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: TFClass (RRID:SCR_012018) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/pennington-biomedical-research-center-lsu

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 2,2024. Opened in 1988, the Pennington Center now houses 53 laboratories that span the Center''''s three programs - Basic Research, Clinical Research, and Population Science - nineteen Core Service laboratories, inpatient and outpatient clinics, a research kitchen, an administrative area, and more than $20 million in technologically advanced equipment. The Center was expanded in 1993 to include the C.B. Pennington Jr. Conference Center, now the C.B. Pennington Jr. Building, residence apartments, and an exercise and fitness facility. More than 80 faculty members and over 600 physicians, scientists, and support personnel focus their research efforts on 10 research program areas: Epidemiology and Prevention, Physical Activity and Health, Cancer, Diabetes, Obesity, Neurodegeneration, Genomics and Molecular Genetics, Stem Cell and Developmental Biology, Neurobiology, and Nutrient Sensing and Signaling. The Pennington Center is led by Dr. Steven B. Heymsfield, formerly of Merck Pharmaceuticals, who specializes in clincal research. The Center''''s funding is broad-based. The foundation is provided by an annual appropriation from the State of Louisiana. Additional funding is provided by grants and contracts from the National Institutes of Health, the U.S. Department of Agriculture, the U.S. Department of Defense, and private sector organizations and companies. The Pennington Medical Foundation and Pennington Biomedical Research Foundation are also major financial resources. The Pennington Medical Foundation is charged with administering the original donation and subsequent gifts from the C.B. Pennington family and establishing guidelines for investments and expenditures.

Proper citation: LSU Pennington Biomedical Research Center Labs and Facilities (RRID:SCR_012537) Copy   

•   Source: SciCrunch Registry

http://tagcleaner.sourceforge.net/

A software tool which can automatically detect and efficiently remove tag sequences from genomic and metagenomic datasets.

Proper citation: TagCleaner (RRID:SCR_011846) Copy   

•   Source: SciCrunch Registry

http://www.insdc.org/

International collaboration of the International Nucleotide Sequence Databases (INSD), DDBJ, ENA, and GenBank, maintained for over 18 years. Individuals submitting data to the international sequence databases should be aware of INSDC policy.

Proper citation: INSDC (RRID:SCR_011967) Copy   

•   Source: SciCrunch Registry

http://www.ebi.ac.uk/gwas/

Catalog of published genome-wide association studies. Genome-wide set of genetic variants in different individuals to see if any variant is associated with trait and disease. Database of genome-wide association study (GWAS) publications including only those attempting to assay single nucleotide polymorphisms (SNPs). Publications are organized from most to least recent date of publication. Studies are identified through weekly PubMed literature searches, daily NIH-distributed compilations of news and media reports, and occasional comparisons with an existing database of GWAS literature (HuGE Navigator). Works with HANCESTRO ancestry representation.

Proper citation: GWAS: Catalog of Published Genome-Wide Association Studies (RRID:SCR_012745) Copy   

•   Source: SciCrunch Registry

http://www.brain.northwestern.edu/index.html

The Cognitive Neurology and Alzheimer's Disease Center (CNADC) is a multidisciplinary organization dedicated to conducting research to discover how the brain coordinates mental functions such as memory, language, attention, and emotion; transferring the benefits of this research to patients with brain diseases that impair cognitive function; and training researchers and clinicians who want to work in this field. The CNADC's mission is to investigate the neurological basis of cognitive function, to elucidate causes of dementia, and to ensure that the patients and their families are the beneficiaries of resultant discoveries. * Clinical Services: Neurobehavior and Memory Health Clinical Services * Annual Grant Opportunities: Annual Core Pilot Project Funding Opportunities * Research Areas & Faculty: Alzheimer's Disease / Primary Progressive Aphasia / Frontal Dementia, Brain Endowment (Brains are permanently stored, and requests for tissue for research purposes are submitted to Dr. Bigio for review by the Northwestern Alzheimer's Disease Center); Cognitive Brain Mapping Group, Volunteer For A Study * Fellowships: Neuropathology Fellowship, Behavioral Neurology & Neuropsychiatry Fellowship * Training Programs: Mechanisms of Aging and Dementia (M.A.D.) Training Program; Training Program in the Neuroscience of Human Cognition

Proper citation: Northwestern University Cognitive Neurology and Alzheimers Disease Center (RRID:SCR_012747) Copy   

•   Source: SciCrunch Registry