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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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BacPac Resources Center Resource Report Resource Website 100+ mentions |
BacPac Resources Center (RRID:SCR_001520) | BPRC | material resource, reagent supplier | It is the distribution arm of their academic laboratory. They operate on a cost-recovery mechanism in order to make the resources generated in their laboratory available to the academic scientific community. While clones and screening services are widely available, library arrays are primarily available to researchers with a scientific need to analyze most clones in the library. This site contains information on currently available BAC and PAC genomic DNA libraries, BAC Clones, PAC Clones, Fosmid Clones, cDNA collections, high-density colony hybridization filters, and BAC and PAC cloning vectors. Protocols used in our laboratory for the hybridization-based screening of colony filters, purification of BAC and PAC DNA, and end-sequencing methodologies, are also provided. BPRC does not list clones, for two reasons: 1)most clones have not been characterized and lack specific data. 2)all clones are part of libraries and all clones from a particular library share common characteristics. Hence, to find out if BPRC has a particular clone, one needs either use Automatic Clone Validation or else find out if the clone is compatible with the range of clone names for a corresponding clone library. Typically (although not always), clone names are derived from the library name. BPRC uses the NCBI-recommended clone nomenclature & library nomenclature. Most arrayed libraries are available in frozen microtiter dish format to academic and non-academic users provided that there is a scientific need for complete-library access. (for instance to annotate, modify or analyze all BAC clones as part of a genome project). | clones and screening services, library arrays, genomic DNA libraries, BAC Clones, PAC Clones, Fosmid Clones, cDNA collections, BAC and PAC cloning vectors | has parent organization: Childrens Hospital Oakland Research Institute | Free, Freely available | nif-0000-09578, SCR_007215, nlx_152819 | http://bacpac.chori.org/ | SCR_001520 | SciCrunch Registry | BacPac Resources Center: BAC Clones Distribution Center, BAC Clones Distribution Center, BACPAC Resources Center | 2026-10-24 12:49:45 | 459 | ||||||
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Leica: STELLARIS 5 microscope Resource Report Resource Website 10+ mentions |
Leica: STELLARIS 5 microscope (RRID:SCR_024663) | instrument resource | STELLARIS 5 microscope has core system with integrated WLL, combined with proprietary Acousto-Optical Beam Splitter and Power HyD S detectors. Together with the TauSense technology, STELLARIS 5 sets a new standard for the quality of images and quantity of information generated. Imaging with user interface, ImageCompass. | microscope, imaging, Acousto-Optical Beam Splitter, Power HyD S detectors, TauSense technology, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_024663.pdf | Model_Number_STELLARIS 5 | SCR_024663 | SciCrunch Registry | 2026-10-24 12:49:44 | 15 | ||||||||||
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Leica: STELLARIS 8 microscope Resource Report Resource Website 1+ mentions |
Leica: STELLARIS 8 microscope (RRID:SCR_024664) | instrument resource | STELLARIS 8 microscope with core system addition of spectrum WLL and specialized detector options of Power HyD family to expand range of confocal applications. Can be combined with all Leica Microsystems modalities, including FAst Lifetime CONtrast (FALCON), Deep In Vivo Explorer (DIVE), STED, Digital Light Sheet (DLS) and CARS. STELLARIS 8 new features maximize the potential of these modalities. | Microscope, Power HyD detectors, Leica Microsystems modalities, | is used by: Icahn School of Medicine at Mount Sinai Microscopy and Advanced Bioimaging Core Facility | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_024664.pdf | Model_Number_STELLARIS 8 | https://microscopy.anu.edu.au/files/Brochure-Leica-Stellaris.pdf | SCR_024664 | SciCrunch Registry | 2026-10-24 12:49:44 | 5 | ||||||||
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Noraxon myoMuscle Resource Report Resource Website |
Noraxon myoMuscle (RRID:SCR_024665) | data analysis software, data processing software, software application, software resource | Software tool for analyzing kinesiological data obtained from Noraxon Ultium EMG system, as well as older Noraxon legacy electromyography systems. Enables detailed insight for performance enhancement, injury prevention, and neuromuscular biofeedback. | Surface electromyography, Noraxon, EMG, analyzing kinesiological data, | Free, Available for download, Freely available | SCR_024665 | SciCrunch Registry | myoMuscle, Noraxon myoMuscle software | 2026-10-24 12:49:44 | 0 | ||||||||||
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Leica: LMD7 Laser Microdissection microscope Resource Report Resource Website 1+ mentions |
Leica: LMD7 Laser Microdissection microscope (RRID:SCR_024657) | instrument resource | Laser Microdissection system enables users to isolate specific single cells or entire areas of tissue. Powered by unique laser design and dynamic software, Leica LMD systems allow users to easily isolate Regions of Interest from entire areas of tissue down to single cells or even subcellular structures such as chromosomes. LMD7 provides higher laser power. Suited to dissect any kind of tissue independent of its size or shape. | Laser Microdissection system, microscope, Leica, isolate specific single cells, isolate entire areas of tissue, dissect any kind of tissue, tissue independent of its size or shape, | https://drive.google.com/file/d/1GYFvceHIJyw9ybdYC9r2YThVHlKKHcQU/view?usp=sharing | Model_Number_LMD7 | https://manualzz.com/doc/17928252/leica_lmd6_7-technicalbrochure_en_2016.03.24 | SCR_024657 | SciCrunch Registry | Leica LMD7 | 2026-10-24 12:49:44 | 1 | ||||||||
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Leica: LMD6 Laser Microdissection microscope Resource Report Resource Website |
Leica: LMD6 Laser Microdissection microscope (RRID:SCR_024658) | instrument resource | Laser Microdissection system enables users to isolate specific single cells or entire areas of tissue. Powered by unique laser design and dynamic software, Leica LMD systems allow users to easily isolate Regions of Interest from entire areas of tissue down to single cells or even subcellular structures such as chromosomes. Leica LMD6 is for standard tissue dissection. Used for standard applications dissecting soft tissues such as brain, liver, or kidney. | Laser Microdissection system, Leica, microscope, standard tissue dissection, dissecting soft tissues, brain dissection, liver dissection, kidney dissection, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_024658.pdf | Model_Number_LMD6 | https://manualzz.com/doc/17928252/leica_lmd6_7-technicalbrochure_en_2016.03.24 | SCR_024658 | SciCrunch Registry | Leica LMD6 | 2026-10-24 12:49:44 | 0 | ||||||||
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National Health Research Institutes; Taipei; Taiwan Resource Report Resource Website 1+ mentions |
National Health Research Institutes; Taipei; Taiwan (RRID:SCR_000335) | NHRI-Taipei | funding resource, nonprofit organization, regional funding resource | Nonprofit, government-funded research organization dedicated to the enhancement of medical research and the improvement of health care in Taiwan. Research interests include both aspects of basic biomedical sciences and specific diseases such as cancer, mental disorders and infectious diseases. The institute is meant to provide direction to national science and technology development in health and medical care, educate young scientists and physicians, establish an objective and fair system for research, and promoting domestic and international cooperation. |
is parent organization of: Helicobacter Pylori Database of Protein Interactomes is parent organization of: POINT: Prediction Of INTeractome is parent organization of: TPMD - Taiwan polymorphic microsatellite marker database |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152538 | SCR_000335 | SciCrunch Registry | 2026-10-24 12:49:46 | 1 | |||||||||
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ScienceOnline2012 Resource Report Resource Website |
ScienceOnline2012 (RRID:SCR_004932) | ScienceOnline2012 | meeting resource, training resource | ScienceOnline2012 is the sixth annual international meeting on science and the Web. The agenda includes more than 70 discussion sessions and workshops over three full days, and additional demonstrations, science lab tours, a museum reception & a dose of comedy. ScienceOnline2012 #scio12 across social media will take place January 19-21, 2012 on the campus of NC State University in the spacious McKimmon Center, with some 450 participants. Every January since 2007, the Research Triangle area of North Carolina has hosted scientists, students, educators, physicians, journalists, librarians, bloggers, programmers and others interested in the way the World Wide Web is changing the way science is communicated, taught and done. As in all the previous years, the meeting will be held in an ''unconference'' style the program is built beforehand with the help of participants on the planning wiki, and the sessions are designed to foster conversations and discussions among everyone in the room rather than a traditional one-before-many lecture approach. Help us continue the success of past conferences by familiarizing yourself with the plans for ScienceOnline2012, volunteering to help, offering your organization''s or company''s sponsorship or in-kind support, and, above all, engaging with the online science community before, during and after the conference. | science, world wide web, conference | nlx_143949 | SCR_004932 | SciCrunch Registry | Science Online 2012 | 2026-10-24 12:49:45 | 0 | |||||||||
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International Symposium on Objective Measures in Auditory Implants Resource Report Resource Website 1+ mentions |
International Symposium on Objective Measures in Auditory Implants (RRID:SCR_003160) | Objective Measures | meeting resource, training resource | International Symposium on Objective Measures in Auditory Implants to explore what unique measures help us to achieve the best hearing outcome for each person who needs an auditory prosthesis. | auditory implant, auditory, implant, ear, hearing | has parent organization: University of Toronto; Ontario; Canada | Free, Freely available | nlx_156860 | SCR_003160 | SciCrunch Registry | Objective Measures in Auditory Implants, 8th International Symposium on Objective Measures in Auditory Implants | 2026-10-24 12:49:45 | 1 | |||||||
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National Research Council Resource Report Resource Website 1+ mentions |
National Research Council (RRID:SCR_000446) | data or information resource, funding resource, organization portal, portal | Private, non-profit institution dedicated to utilizing knowledge in science, engineering, technology and health to improve government decision making and public policy as well as increase public education and understanding. The council collects, analyzes and shares information and knowledge through activities such as consensus studies, meetings and workshops, and program and research management. | research, public, policy, nonprofit, education, government, engineering, science, technology, health | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00486 | http://sites.nationalacademies.org/nrc/index.htm | SCR_000446 | SciCrunch Registry | NRC | 2026-10-24 12:49:45 | 1 | ||||||||
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GQuery Resource Report Resource Website 100+ mentions |
GQuery (RRID:SCR_001455) | Entrez | data or information resource, database, organization portal, portal | Search engine for the National Library of Medicine and the National Institutes of Health. It contains databases such as PubMed, EST, and BioSystems. | search engine, national library of medicine, nih, national institutes of health | has parent organization: NCBI | Free, Freely Available | nif-0000-08510 | SCR_001455 | SciCrunch Registry | NCBI Entrez, Entrez - The Life Sciences Search Engine | 2026-10-24 12:49:47 | 143 | |||||||
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Center for the Neural Basis of Cognition Resource Report Resource Website 10+ mentions |
Center for the Neural Basis of Cognition (RRID:SCR_002301) | data or information resource, organization portal, portal | CNBC is joint venture of University of Pittsburgh and Carnegie Mellon University. Our center leverages the strengths of the University of Pittsburgh in basic and clinical neuroscience and those of Carnegie Mellon in cognitive and computational neuroscience to support a coordinated cross-university research and educational program of international stature. In addition to our Ph.D. program in Neural Computation, we sponsor a graduate certificate program in cooperation with a wide variety of affiliated Ph.D. programs. | brain, cognition, cognitive abilities, development, disorders, human, human thought, learning, mind, multidisciplinary, neural activity, neural mechanisms, neurobasis, normal, training | has parent organization: Carnegie Mellon University; Pennsylvania; USA | nif-0000-00370 | SCR_002301 | SciCrunch Registry | CNBC | 2026-10-24 12:49:48 | 16 | |||||||||
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Dartmouth Geospatial Shared Resource Resource Report Resource Website |
Dartmouth Geospatial Shared Resource (RRID:SCR_000874) | collaboration tool, group, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. A resource to develop shared resources for the implementation of geospatial analysis for cancer research at Dartmouth. Their goal is to provide expert consultation and collaboration for research projects of NCCC members in behavior, epidemiology, and health services research. The GeoSpatial Resource also strives to educate members of the community in different aspects of geospatial analysis by providing courses through TDI and at Dartmouth College. |
is listed by: Eagle I has parent organization: Dartmouth College; New Hampshire; USA |
Cancer Control | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156227 | http://dartmouth.eagle-i.net/i/0000012d-e946-6d78-4bd3-f7c180000000 | SCR_000874 | SciCrunch Registry | 2026-10-24 12:49:46 | 0 | ||||||||
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Center for Imaging of Neurodegenerative Diseases Resource Report Resource Website |
Center for Imaging of Neurodegenerative Diseases (RRID:SCR_001968) | CIND | data or information resource, organization portal, portal | Biomedical technology research center that develops and validates new imaging methods for detecting brain abnormalities in neurodegenerative diseases, including Alzheimer's disease, vascular dementia, frontotemporal dementia, Parkinson's disease, as well as epilepsy, depression, and other conditions associated with nerve loss in the brain. As people around the globe live longer, the impact of neurodegenerative diseases is expected to increase further with dire social and economical consequences for societies if no effective treatments are developed soon. The development at CIND is aimed to improve magnetic resonance imaging (MRI). The ultimate goal of the scientific program is to identify imaging markers that improve accuracy in diagnosing neurodegenerative diseases at early stages, achieve more reliable prognoses of disease progression, and facilitate the discovery of effective treatment interventions. In addition to addressing the general needs for studying neurodegenerative diseases, another focus of CIND concerns brain diseases associated with military service and war combat, such as post traumatic stress disorder (PTSD), brain trauma, gulf war illness and the long-term effects of these conditions on the mental health of veterans. The symbiosis between CIND and the Veterans Administration Medical Center in San Francisco makes this program uniquely suited to serve military veterans. | Biomedical Technology Research Center, depression, mri, imaging, neuroimaging | has parent organization: University of California at San Francisco; California; USA | Neurodegenerative disease, Alzheimer's disease, Vascular dementia, Frontotemporal dementia, Parkinson's disease, Epilepsy, Depressive Disorder, Post-Traumatic Stress Disorder, Brain injury, Gulf war illness | NIBIB | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10539 | http://www.cind.research.va.gov/index.asp | SCR_001968 | SciCrunch Registry | UCSF Center for Imaging of Neurodegenerative Diseases | 2026-10-24 12:49:47 | 0 | ||||
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SNPAAMapper Resource Report Resource Website |
SNPAAMapper (RRID:SCR_002012) | SNPAAMapper | data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. A downstream variant annotation program that can effectively classify variants by region (e.g. exon, intron, etc), predict amino acid change type (e.g. synonymous, non-synonymous mutation, etc), and prioritize mutation effects (e.g. CDS versus 5?UTR, etc). Major features: * The pipeline accepts the VCF (Variant Call Format) input file in tab-delimited format and processes the vcf input file containing all cases (G5, lowFreq, and novel) * The variant mapping step has the option of letting users select whether they want to report the bp distance between each identified intron variant and its nearby exon * The pipeline can deal with VCF files called by different SAMTools versions (0.1.18 and older ones) and also offers flexibility in dealing with vcf input files generated using SAMTools with two or three samples * The spreadsheet result file contains full protein sequences for both ref and alt alleles, which makes it easier for downstream protein structure/function analysis tools to take | single nucleotide polymorphism, amino acid, variant, annotation, exon, intron, mutation, next-generation sequencing, perl, downstream analysis, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Michigan Medical School; Michigan; USA |
PMID:24250114 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01922, biotools:snpaamapper | https://bio.tools/snpaamapper | SCR_002012 | SciCrunch Registry | SNPAAMapper - A SNP Amino Acid Mapping tool | 2026-10-24 12:49:47 | 0 | |||||
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DPARSF Resource Report Resource Website 500+ mentions |
DPARSF (RRID:SCR_002372) | DPARSF | data processing software, software application, software resource, software toolkit | A MATLAB toolbox forpipeline data analysis of resting-state fMRI that is based on Statistical Parametric Mapping (SPM) and a plug-in software within DPABI. After the user arranges the Digital Imaging and Communications in Medicine (DICOM) files and click a few buttons to set parameters, DPARSF will then give all the preprocessed (slice timing, realign, normalize, smooth) data and results for functional connectivity, regional homogeneity, amplitude of low-frequency fluctuation (ALFF), fractional ALFF, degree centrality, voxel-mirrored homotopic connectivity (VMHC) results. DPARSF can also create a report for excluding subjects with excessive head motion and generate a set of pictures for easily checking the effect of normalization. In addition, users can also use DPARSF to extract time courses from regions of interest. DPARSF basic edition is very easy to use while DPARSF advanced edition (alias: DPARSFA) is much more flexible and powerful. DPARSFA can parallel the computation for each subject, and can be used to reorient images interactively or define regions of interest interactively. Users can skip or combine the processing steps in DPARSF advanced edition freely. | magnetic resonance, fmri, resting-state fmri, matlab, analysis, brain |
is used by: DPABI is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China has parent organization: RFMRI.ORG |
PMID:20577591 | GNU General Public License | nlx_155735 | http://www.nitrc.org/projects/dparsf | SCR_002372 | SciCrunch Registry | Data Processing Assistant for Resting-State fMRI | 2026-10-24 12:49:48 | 696 | |||||
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MutPred Splice Resource Report Resource Website 1+ mentions |
MutPred Splice (RRID:SCR_000594) | MutPred Splice | analysis service resource, production service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 6,2023. Tool for identifying coding region variants which disrupt pre-mRNA splicing and the underlying mechanism. | exonic variant, splicing, mrna, next generation sequencing, coding region substitution |
is listed by: OMICtools has parent organization: Cardiff University; Wales; United Kingdom has parent organization: Buck Institute; California; USA |
PMID:24451234 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02257 | SCR_000594 | SciCrunch Registry | 2026-10-24 12:49:47 | 1 | |||||||
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MUMmerGPU Resource Report Resource Website 1+ mentions |
MUMmerGPU (RRID:SCR_001200) | MUMmerGPU | data processing software, software application, software resource | Software tool as high throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. Aligns sequences in parallel on video card to accelerate widely used serial CPU program MUMmer. | parallel computation 4, high-throughput sequencing, sequence alignment, dna, graphics processing unit |
is listed by: OMICtools is related to: MUMmer has parent organization: SourceForge has parent organization: University of Maryland; Maryland; USA |
NIGMS R01 GM083873; NLM R01 LM006845 |
PMID:20161021 | Free, Available for download, Freely available | OMICS_02151 | SCR_001200 | SciCrunch Registry | High-throughput sequence alignment using Graphics Processing Units | 2026-10-24 12:49:47 | 5 | |||||
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Statistical non-Parametric Mapping Resource Report Resource Website 50+ mentions |
Statistical non-Parametric Mapping (RRID:SCR_002092) | SnPM | data processing software, software application, software resource, software toolkit | A toolbox for Statistical Parametric Mapping (SPM) that provides an extensible framework for voxel level non-parametric permutation/randomization tests of functional Neuroimaging experiments with independent observations. SnPM uses the General Linear Model to construct pseudo t-statistic images, which are then assessed for significance using a standard non-parametric multiple comparisons procedure based on randomization/permutation testing. It is most suitable for single subject PET/SPECT analyses, or designs with low degrees of freedom available for variance estimation. In these situations the freedom to use weighted locally pooled variance estimates, or variance smoothing, makes the non-parametric approach considerably more powerful than conventional parametric approaches, as are implemented in SPM. Further, the non-parametric approach is always valid, given only minimal assumptions. The SnPM toolbox provides an alternative to the Statistics section of SPM. | analyze, linear, linux, macos, matlab, microsoft, magnetic resonance, nifti, posix/unix-like, regression, statistical operation, sunos/solaris, windows, statistical parametric mapping, pet, spect |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is affiliated with: SPM has parent organization: University of Michigan; Ann Arbor; USA has parent organization: University of Warwick; Coventry; United Kingdom |
Human Brain Project | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00342 | http://www.nitrc.org/projects/snpm | SCR_002092 | SciCrunch Registry | SnPM: Statistical nonParametric Mapping, SnPM - Statistical NonParametric Mapping - A toolbox for SPM, Statistical nonParametric Mapping | 2026-10-24 12:49:48 | 95 | |||||
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Karmanos Cancer Institute Resource Report Resource Website |
Karmanos Cancer Institute (RRID:SCR_000508) | Karmanos | data or information resource, portal | Center for patient care, education and research on cancer. The institute focuses its research on prevention methods, early detection, treatment and finding cures. | cancer, research, education, prevention, early detection, treatment, patient, care |
has parent organization: Wayne State University; Michigan; USA is parent organization of: JP McCarthy Cord Stem Cell Bank |
Cancer | NCI | Public | nlx_143656 | SCR_000508 | SciCrunch Registry | Karmanos Cancer Center, Barbara Ann Karmanos Cancer Institute, Barbara Ann Karmanos Cancer Center | 2026-10-24 12:49:46 | 0 |
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