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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Rosalind Resource Report Resource Website 10+ mentions |
Rosalind (RRID:SCR_006233) | Rosalind | online course, open course, training resource | A software infrastructure, course and tool set for teaching bioinformatics, and biology through the use of models. This platform for learning bioinformatics through problem solving aims to make learning bioinformatics fun and easy. Learning bioinformatics usually requires solving computational problems of varying difficulty that are extracted from real challenges of molecular biology. Rosalind offers an array of intellectually stimulating problems that grow in biological and computational complexity; each problem is checked automatically, so that the only resource required to learn bioinformatics is an internet connection. Rosalind also promises to facilitate improvements in standard bioinformatics education by providing a vital teaching aid and a central homework resource. Rosalind is inspired by Project Euler, Google Code Jam, and the ever growing movement of free online courses. The project''s name commemorates Rosalind Franklin, whose X-ray crystallography with Raymond Gosling facilitated the discovery of the DNA double helix by Watson and Crick. We hope that Rosalind will inspire a new generation of bioinformatics students by attracting biologists who want to develop vital programming skills at their own pace in a unique environment as well as programmers who have never been exposed to some of the stimulating computational problems generated by molecular biology. | bioinformatics, biology, model, programming, teaching, course, problem solving, python, algorithm, molecular biology |
is listed by: OMICtools has parent organization: University of California at San Diego; California; USA has parent organization: Saint Petersburg Academic University; Saint Petersburg; Russia |
Howard Hughes Medical Institute ; Ministry of Education and Science of the Russian Federation ; Megagrant |
nlx_151793, OMICS_01709 | SCR_006233 | SciCrunch Registry | 2026-10-24 12:49:45 | 39 | ||||||||
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Drug Design Data Resource Resource Report Resource Website 1+ mentions |
Drug Design Data Resource (RRID:SCR_000497) | D3R | data or information resource, database, portal | Project portal's database of protein-ligand data sets provided by pharmaceutical partners that provide atomic details of drug mechanisms that will be used to improve computer-aided drug-design methods and thus accelerate drug discovery. The project aims to help companies release the high-quality data they have generated, which has incredible value to researchers working to improve methods of computer-aided drug discovery. Everyone stands to benefit from the ability to develop new medications more quickly and inexpensively. What computational chemists globally are trying to do is to make faster, more accurate, more predictive programs to speed up the process. Part of their mission is to engage the community in these challenges to test newly developed predictive algorithms. | computer-aided drug design, drug design, pharmaceutical, small molecule, ligand-protein interaction, protein, ligand, drug development, drug, binding, data set, affinity, computation, medicine, compound, structure |
uses: Binding MOAD uses: Protein Data Bank Bind Database is used by: NIF Data Federation is listed by: DataCite has parent organization: University of California at San Diego; California; USA has parent organization: University of California; California; USA |
NIGMS 1U01GM111528 | nlx_158375 | https://api.datacite.org/dois?prefix=10.15782 | SCR_000497 | SciCrunch Registry | Drug Design Data (D3R) Resource | 2026-10-24 12:49:46 | 3 | ||||||
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NCI SEER Cancer Statistics Review Resource Report Resource Website 500+ mentions |
NCI SEER Cancer Statistics Review (RRID:SCR_024685) | data or information resource, disease-related portal, portal, topical portal | Platform to report outlining trends in cancer statistics and methods to derive various cancer statistics from the Surveillance, Epidemiology, and End Results (SEER) program. Authoritative source for cancer statistics in the United States. | trends in cancer, cancer statistics, methods to derive various cancer statistics, Surveillance, Epidemiology, and End Results program, SEER program, | cancer | NCI | Free, Freely available | https://seer.cancer.gov/ | SCR_024685 | SciCrunch Registry | SEER Cancer Statistics Review, , National Cancer Institute SEER Cancer Statistics Review, NIH NCI Surveillance, Epidemiology, and End Results Cancer Statistics Review, NIH NCI SEER Cancer Statistics Review | 2026-10-24 12:49:44 | 760 | |||||||
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OppNet - Basic Behavioral and Social Science Opportunity Network Resource Report Resource Website 1+ mentions |
OppNet - Basic Behavioral and Social Science Opportunity Network (RRID:SCR_003522) | OppNet | data or information resource, funding resource, organization portal, portal | OppNet is a trans-NIH initiative to expand the agency's funding of basic behavioral and social sciences research (b-BSSR). Basic-BSSR studies mechanisms and processes that influence behavior at the individual, group, community and population level. Research results lead to new approaches for reducing risky behaviors and improving the adoption of healthy practices. The mission of OppNet is to pursue opportunities for strengthening basic behavioral and social science research (b-BSSR) at the NIH while innovating beyond existing investments. * OppNet advances basic behavioral and social science research through activities and initiatives that build a body of knowledge about the nature of behavior and social systems. * OppNet prioritizes activities and initiatives that focus on basic mechanisms of behavior and social processes; that are relevant to the missions and public health challenges of multiple NIH Institutes, Centers and Offices (ICOs); and that build upon existing NIH investments without replicating them. All NIH Institutes and Centers (ICs) share the mission of supporting b-BSSR. OppNet will also develop a plan for focused multi-year programs across ICs to advance priority topics within b-BSSR. | has parent organization: National Institutes of Health | nif-0000-38232 | SCR_003522 | SciCrunch Registry | OppNet: Basic Behavioral and Social Science Opportunity Network | 2026-10-24 12:49:45 | 1 | |||||||||
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NCI Lymphoid Neoplasm Recode 2020 Revision Definition Resource Report Resource Website |
NCI Lymphoid Neoplasm Recode 2020 Revision Definition (RRID:SCR_024686) | data or information resource, disease-related portal, portal, topical portal | Website describing International Classification of Diseases codes that corresponds to lymphomas in the Surveillance, Epidemiology, and End Results (SEER) registry. | International Classification of Diseases codes, ICD, lymphoma, Surveillance, Epidemiology, and End Results registry, SEER registry, | lymphomas | NCI | Free, Available for download, Freely available | https://seer.cancer.gov/lymphomarecode/lymphoma-2021.html | SCR_024686 | SciCrunch Registry | , Lymphoid Neoplasm Recode 2020 Revision Definition, National Cancer Institute Lymphoid Neoplasm Recode 2020 Revision Definition, NIH NCI Lymphoid Neoplasm Recode 2020 Revision Definition | 2026-10-24 12:49:44 | 0 | |||||||
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Emerson: Branson Digital Sonifier SFX250 Resource Report Resource Website 1+ mentions |
Emerson: Branson Digital Sonifier SFX250 (RRID:SCR_024710) | instrument resource | Branson Sonifier ultrasonic cell disruptor / homogenizers are versatile laboratory units suitable for broad range of liquid processing applications. Digital sonifier to disrupt cells, bacteria, spores, or tissue. Ideal for initiating and accelerating chemical, biochemical, and physical reactions, and for degassing liquids. Used to prepare emulsion to 0.01 micron, homogenize immiscible liquids, polymerize some materials, and depolymerize others. | Digital sonifier, Branson, instrument, sonication, sonicator, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_024710.pdf | Model_Number_SFX250 | https://www.manualslib.com/manual/1387800/Branson-Digital-Sonifier-250.html#product-Sonifier%20450 | SCR_024710 | SciCrunch Registry | Branson Digital Sonifier | 2026-10-24 12:49:45 | 3 | ||||||||
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Polar Geospatial Center Resource Report Resource Website |
Polar Geospatial Center (RRID:SCR_000402) | PGC | data or information resource, organization portal, portal | Portal as data resource, map repository, and GIS service provider for federally-funded scientists conducting research in the Arctic and Antarctic. The PGC holds an extensive collection of satellite imagery and aerial photography at varying resolutions. | arctic, antarctic, geospatial, polar, mapping, gis, remote sensing, cartography, map, image collection, satellite imagery, aerial photography |
is listed by: CINERGI has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
NSF | Free, Freely available | nlx_154743 | SCR_000402 | SciCrunch Registry | 2026-10-24 12:49:45 | 0 | |||||||
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National University of Singapore, Computational Bioengineering Laboratory Resource Report Resource Website |
National University of Singapore, Computational Bioengineering Laboratory (RRID:SCR_000284) | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Computational Bioengineering Laboratory in the Division of Bioengineering at the National University of Singapore has expertise in mathematical modeling, software and algorithm development, numerical techniques such as finite element analysis, computer simulation and visualization, signal and image processing plus an understanding of the biological systems that drive our efforts. The following are the main themes underlying the Computational Bioengineering Laboratory projects: - Computational Biology - Computational Physiology - Biosignal & Bioimage Processing - Integrated Physiology & the Physiome Project | finite element, algorithm, bioengineering, bioimage, biological, biosignal, computational, development, laboratory, mathematical, modeling, physiome, psysiology, signal, simulation, software, system, technique, visualization, image | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10369 | SCR_000284 | SciCrunch Registry | NUS CompBioLab | 2026-10-24 12:49:46 | 0 | |||||||||
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UCSD WIFIRE Resource Report Resource Website |
UCSD WIFIRE (RRID:SCR_024650) | consortium, data or information resource, organization portal, portal | Consortium of UC San Diego organizations and number of partnerships including university collaborators, industry partners, fire departments, utilities, State’s CalOES and CPUC. Develops science driven technologies with fire management community using collaborative workflows integrating science and AI. Provides real time fire modeling and predictions for firefighters. Harnesses emerging AI techniques to offer novel way to approach spatial heterogeneity and upgrading of data. | fire management community, real time fire modeling and predictions, spatial heterogeneity and upgrading of data, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.48792 | SCR_024650 | SciCrunch Registry | WIFIRE Lab, UCSD WIFIRE Lab | 2026-10-24 12:49:44 | 0 | ||||||||
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UC Davis Library Resource Report Resource Website |
UC Davis Library (RRID:SCR_024651) | data or information resource | Collections include print and ebooks, newspapers, maps, photographs, art, historical archives, and other materials in physical and digital formats. Provides campuswide subscriptions to wide range of licensed resources, from journals and library databases to streaming media, clinical apps, and lab experiment videos. Offers access to UC collection as part of University of California. | journals, library databases, streaming media, clinical apps, lab experiment videos, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.15140 | SCR_024651 | SciCrunch Registry | University of California Davis Library | 2026-10-24 12:49:43 | 0 | ||||||||
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Koadarray Resource Report Resource Website 1+ mentions |
Koadarray (RRID:SCR_000321) | data processing software, image analysis software, software application, software resource | A fully automatic array image analysis software which can process single or multiple array images. Koadarray automatically finds the spot locations within each image and quantifies the spot intensity data. It can be used in conjunction with radioactive applications, macroarray applications, fluorescent microarray image analysis and fluorescent microplate images. | image analysis, macroarray application, fluorescent microarray, fluorescent microplate, radioactive, spot intensity data | is listed by: OMICtools | Restricted | OMICS_00842 | SCR_000321 | SciCrunch Registry | 2026-10-24 12:49:45 | 1 | |||||||||
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CpGassoc Resource Report Resource Website 1+ mentions |
CpGassoc (RRID:SCR_000320) | software resource, software toolkit | Software R package to test association between methylation at CpG sites across genome and phenotype of interest, adjusting for any relevant covariates. Can perform standard analyses of large datasets without need to manually input data. Can handle mixed effects models with chip or batch entering model as random intercept. Includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites. | control filters, permutation test, qq plots, manhattan plots, scatterplots, phenotype, sequence analysis software, cpg |
is listed by: OMICtools is listed by: CRAN |
PMID:22451269 | Free, Available for download, Freely available | OMICS_00793 | SCR_000320 | SciCrunch Registry | 2026-10-24 12:49:45 | 1 | ||||||||
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OpenMM Resource Report Resource Website 10+ mentions |
OpenMM (RRID:SCR_000436) | simulation software, software application, software resource, standalone software | Software toolkit to run modern molecular simulations. It can be used either as a standalone application for running simulations, or as a library that enables accelerated calculations for molecular dynamics on high-performance computer architectures. | modeling, molecular dynamics, molecular simulation |
is used by: CHARMM-GUI is listed by: Simtk.org has parent organization: Stanford University; Stanford; California |
NCI P30 CA008748; NIGMS R01 GM062868; NIGMS U54 GM072970 |
PMID:28746339 PMID:23316124 PMID:38154096 DOI:10.1021/acs.jpcb.3c06662 |
Free, Available for download, Freely available | nif-0000-23334 | https://github.com/openmm/openmm, https://openmm.org/, https://openmm.org/documentation, https://github.com/openmm | https://simtk.org/home/openmm | SCR_000436 | SciCrunch Registry | OpenMM 8, OpenMM, OpenMM 7, OpenMM 4 | 2026-10-24 12:49:45 | 12 | ||||
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UC Natural Reserve System Resource Report Resource Website |
UC Natural Reserve System (RRID:SCR_024646) | UCNRS | data or information resource, portal, topical portal | Library of ecosystems throughout California. Most of the state’s major habitat types are represented, from coastal tidepools to inland deserts, and lush wetlands to redwood forests. | ecosystems throughout California, habitat types, coastal tidepools, inland deserts, lush wetlands, redwood forests, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.21973 | SCR_024646 | SciCrunch Registry | 2026-10-24 12:49:43 | 0 | ||||||||
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University of California Press Resource Report Resource Website |
University of California Press (RRID:SCR_024647) | nonprofit organization | Publishing house associated with University of California that engages in academic publishing. UC Press Foundation raises funds to uphold vital role as independent, nonprofit publisher, and receives philanthropic support. | Publishing house, University of California, academic publishing, independent, nonprofit publisher, |
is listed by: DataCite has parent organization: University of California; California; USA |
https://api.datacite.org/dois?prefix=10.17916 | SCR_024647 | SciCrunch Registry | UC Press | 2026-10-24 12:49:43 | 0 | |||||||||
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MNI brain and the Talairach atlas Resource Report Resource Website 50+ mentions |
MNI brain and the Talairach atlas (RRID:SCR_000434) | mni2tal | data or information resource, portal, project portal | Resource that discusses MNI brain, and the difference between the MNI brain and the brain in the Talairach atlas. Approaches to converting MNI coordinates to Talairach coordinates and a few other methods for locating your activation are also presented.Matlab function that transforms MNI coordinates to Talaraich coordinates. The inverse function, tal2mni is also available. | mni coordinate, mri, matlab, talaraich, coordinate |
is used by: Sleuth has parent organization: CBU Imaging Wiki has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Free, Freely available | SciRes_000110, SCR_001965, nif-0000-10537 | SCR_000434 | SciCrunch Registry | 2026-10-24 12:49:46 | 86 | ||||||||
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LREC Conferences Resource Report Resource Website 1+ mentions |
LREC Conferences (RRID:SCR_004752) | meeting resource, training resource | The LREC conference has become a major event in the field of language engineering, and constitutes a milestone in the life of Human Language Technologies (HLT). The International Conference on Language Resources and Evaluation is organized by ELRA biennially with the support of institutions and organizations involved in HLT, and brings together a large number of people working and interested in HLT. | has parent organization: European Language Resources Association | nlx_75451 | SCR_004752 | SciCrunch Registry | LREC Conference, Language Resources Evaluation Conferences | 2026-10-24 12:49:45 | 3 | ||||||||||
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Leica: STELLARIS 8 FALCON FLIM microscope Resource Report Resource Website 1+ mentions |
Leica: STELLARIS 8 FALCON FLIM microscope (RRID:SCR_024660) | instrument resource | Microscope for functional imaging. Used to investigate cellular physiology and to explore dynamics in living cells. Enables video rate lifetime imaging acquisition for rapid kinetic studies in live cells. Adds new dimension of contrast to imaging for biosensing and tracking of interactions between proteins. | Microscope, functional imaging, investigate cellular physiology, explore dynamics in living cells, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_024660.pdf | Model_Number_ STELLARIS 8 FALCON FLIM | SCR_024660 | SciCrunch Registry | STELLARIS 8 FALCON FLIM Microscope, STELLARIS 8 FAst Lifetime CONtrast Fluorescence Lifetime Imaging Microscope | 2026-10-24 12:49:43 | 3 | |||||||||
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Japan Society for the Promotion of Science Resource Report Resource Website 10+ mentions |
Japan Society for the Promotion of Science (RRID:SCR_001085) | JSPS | funding resource, group, regional funding resource | Research and outreach organization dedicated to promoting science, research and education. The society has four main objectives, including building international cooperative networks, enhancing education and research at universities, building evidence-based science-promotion systems and creating diverse world level knowledge. | research, science, promotion, japan, education | nlx_151882 | SCR_001085 | SciCrunch Registry | 2026-10-24 12:49:45 | 49 | ||||||||||
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Leica: STELLARIS 8 CRS microscope Resource Report Resource Website 1+ mentions |
Leica: STELLARIS 8 CRS microscope (RRID:SCR_024661) | instrument resource | Microscope enables to implement label free chemical imaging. Used to study structures that cannot be visualized with traditional fluorescent microscopy methods. | Microscope, label free chemical imaging, | Model_Number_STELLARIS 8 CRS | SCR_024661 | SciCrunch Registry | , STELLARIS 8 CRS Coherent Raman Scattering microscope, Leica STELLARIS 8 CRS Coherent Raman Scattering microscope | 2026-10-24 12:49:44 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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