Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
CVODE Resource Report Resource Website 50+ mentions |
CVODE (RRID:SCR_014696) | data analysis software, data processing software, software application, software resource | Solver for stiff and nonstiff ordinary differential equation (ODE) systems (initial value problem), given in explicit form y' = f(t,y), based on Adams and BDF methods. It is one of the programs that makes up the Suite of Nonlinear and Differential/Algebraic Equation Solvers (SUNDIALS)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | data analysis software, solver, equation solver, ordinary differential equation, differential equation, stiff, nonstiff | is listed by: SoftCite | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014696 | SUNDIALS CVODE | 2026-09-19 12:53:00 | 56 | |||||||||
|
iBRAIN Resource Report Resource Website 1+ mentions |
iBRAIN (RRID:SCR_014691) | group | Brain research group affiliated with the Nanjing University of Aeronautics and Astronautics (NUAA) in China. The main research interests of iBRAIN include developing methods in machine learning, data mining, neural computation, and related areas for decoding brain functions or recognizing brain disease. Research related code and datasets can be found on the main site. | brain, human brain, brain disease, brain research, group, brain research group, machine learning, data mining, neural computation | Brain disease | Public | SCR_014691 | Intelligence BRain Analysis through Images and Networks (iBRAIN), Intelligence BRain Analysis through Images and Networks, Intelligence Brain Analysis Through Images and Networks | 2026-09-19 12:53:00 | 6 | |||||||||
|
SparseTracer Resource Report Resource Website 1+ mentions |
SparseTracer (RRID:SCR_014736) | data analysis software, data processing software, software application, software resource | Software used to automatically trace single neurons. It supports VTK 3D visualization. | single neuron, automatic, trace, software, vtk, 3d visualization, vtk 3d visualization, bioinformatics | Free, Available for download | SCR_014736 | 2026-09-19 12:53:01 | 2 | |||||||||||
|
SplitsTree Resource Report Resource Website 1000+ mentions |
SplitsTree (RRID:SCR_014734) | data analysis software, data processing software, data visualization software, software application, software resource | Application that uses molecular sequence data to compute unrooted phylogenetic networks. Given an alignment of sequences, a distance matrix, or a set of trees, the program will compute a phylogenetic tree or network using methods such as split decomposition, neighbor-net, consensus network, super networks methods or methods for computing hybridization or simple recombination networks., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | sequence data, unrooted phylogenetic network, phylogenetic network, phylogeny, data analysis software, data visualization software, software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014734 | SplitsTree3, SplitsTree4 | 2026-09-19 12:53:01 | 1361 | ||||||||||
|
SLiCAP Resource Report Resource Website |
SLiCAP (RRID:SCR_014742) | data analysis software, data processing software, software application, software resource, software toolkit | A software toolbox containing a symbolic linear circuit analysis program. It is a MATLAB application that helps set up and solve design equations of electronic circuits. | symbolic network simulation tool, symbolic linear circuit, analysis, electronic circuit, matlab, data analysis software, circuit | Open source, Available for download | SCR_014742 | Symbolic Linear Circuit Analysis | 2026-09-19 12:53:01 | 0 | ||||||||||
|
Symbolic SPICE Resource Report Resource Website |
Symbolic SPICE (RRID:SCR_014743) | data analysis software, data processing software, software application, software resource | Analog circuit analyzer and approximator used as a pre-processor to find design formulas or as a post-processor to approximate design formulas. The program performs the .AC analysis in SPICE symbolically with optional numeric evaluation and user selected threshold approximation. | analog circuit, circuit analysis, circuit approximation, data analysis software, ac analysis, symbolic | is related to: Michigan State University; Michigan; USA | Demo available | SCR_014743 | 2026-09-19 12:53:01 | 0 | ||||||||||
|
PePPER Prokaryote Promoter Prediction Resource Report Resource Website 10+ mentions |
PePPER Prokaryote Promoter Prediction (RRID:SCR_014740) | PePPER | data analysis software, data processing software, sequence analysis software, software application, software resource | A webserver for the prediction of prokaryote promoter elements and regulons. DNA in FASTA or plain format serve as input. A gene table can be included with the run. | promoter prediction objective, prokaryote, promoter, regulon, predict, sequence analysis software, web server | PMID:22747501 | Free, Web application | SCR_014740 | 2026-09-19 12:53:01 | 32 | |||||||||
|
SCAM Resource Report Resource Website 10+ mentions |
SCAM (RRID:SCR_014741) | data analysis software, data processing software, software application, software resource, software toolkit | Software toolbox for deriving and solving circuit equations symbolically in MATLAB. | matlab, circuit equations, symbolic solving, derivation, circuit analysis | Open source, Available for download | SCR_014741 | Symbolic Circuit Analysis in Matlab, Symbolic Circuit Analysis in Matlab (SCAM) | 2026-09-19 12:53:01 | 43 | ||||||||||
|
Adaptive Biotechnologies Resource Report Resource Website 10+ mentions |
Adaptive Biotechnologies (RRID:SCR_014709) | resource | Commercial organization which combines high-throughput sequencing and bioinformatics to profile T-cell and B-cell receptors. | high throughput, sequencing, bioinformatics, t cell, b cell, biotechnology | Commercially available | SCR_014709 | 2026-09-19 12:53:01 | 24 | |||||||||||
|
Measures of Effect Size Toolbox Resource Report Resource Website 1+ mentions |
Measures of Effect Size Toolbox (RRID:SCR_014703) | MES | data analysis software, data processing software, software application, software resource | Matlab statistics toolbox allowing the computation of a wide range of measures of effect size. Four main toolbox functions cover common analysis designs, including two-sample-, oneway- and twoway- data sets as well as categorical data. Data may be repeated-measures. | matlab, statistics toolbox, measure of effect size, effect size, common analysis design, data analysis software | PMID:22082031 | Available for download | SCR_014703 | MES Toolbox | 2026-09-19 12:53:01 | 3 | ||||||||
|
Tool for Tumor Progression Resource Report Resource Website 1+ mentions |
Tool for Tumor Progression (RRID:SCR_014700) | TTP | simulation software, software application, software resource | Software used to simulate tumor progression in various stages of growth in order to study the process' dynamics. The input can be fitness landscape, mutation rate, and cell division time. The output is growth dynamics and other relevant statistics, such as expected tumor detection time and expected appearance time of surviving mutants. The tool is implemented in Java and runs on all operating systems which run a Java Virtual Machine (JVM) of version 1.7 or above. | tumor, tumor progression, cancer, simulation, simulation software, tumor dynamics, tumor growth | Cancer | Available for download, Necessary libraries are included in the file | SCR_014700 | Tool for Tumor Progression (TTP) | 2026-09-19 12:53:01 | 1 | ||||||||
|
Australian Data Archive Resource Report Resource Website 1+ mentions |
Australian Data Archive (RRID:SCR_014706) | data repository, service resource, storage service resource | A consortium of leading national Australian universities which collects and preserves digital research data and makes these data available for secondary analysis. The consortium provides a data catalogue comprised of seven sub-archives: Social Science, HIstorical, Indigenous, Longitudinal, Qualitative, Crime and Justice, and International. All users can browse and search the catalogue, view study and variable documentation, and download related material. Registered users can also analyze and visualize most data online and users who have completed the relevant undertaking form(s) can download entire studies or subsets of variables. Deposited data are processed, reviewed, and published for research use. | data archive, data catalogue, australia, digital research data |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Available to the research community | DOI:10.26193, DOI:10.17616/R3DS3K, DOI:10.25504/FAIRsharing.sN8d9i | https://doi.org/10.26193, https://dx.doi.org/10.26193, http://doi.org/10.17616/R3DS3K, https://fairsharing.org/10.25504/FAIRsharing.sN8d9i | SCR_014706 | 2026-09-19 12:53:01 | 9 | ||||||||
|
NMRbox Resource Report Resource Website 50+ mentions |
NMRbox (RRID:SCR_014827) | software resource, software toolkit, web application | Computing platform for biomolecular NMR available to not-for-profit or government users. It consists of a virtual machine (VM) provisioned with dozens of widely-used NMR software packages, and is available as a cloud-based Platform-as-a-Service (PaaS) or as a downloadable VM for local execution. | Nuclear Magnetic Resonance, nmr, spectra, computing platform, platform, virtual machine, cloud, software toolbox | NIGMS P41GM111135 | Account required | SCR_014827 | , Nuclear Magnetic Resonance box, NMRbox.org | 2026-09-19 12:53:02 | 92 | |||||||||
|
Webulous Resource Report Resource Website 1+ mentions |
Webulous (RRID:SCR_014825) | software resource, web application | Server used to create spreadsheets with ontology based data validations. Webulous can process populated templates and transform them into OWL/RDF using design patterns expressed in OPPL. It also has an add-on with Google spreadsheets which supports loading templates from a Webulous server and allows users to submit populated spreadsheets back to the Webulous server for transformation into OWL. | server, ontology, data validation, owl, spreadsheet | Available for installation | SCR_014825 | 2026-09-19 12:53:02 | 2 | |||||||||||
|
neMESYS UserInterface Resource Report Resource Website |
neMESYS UserInterface (RRID:SCR_014793) | data acquisition software, data processing software, software application, software resource | Software used to configure and control up to 32 neMESYS syringe pumps. Its features include automatic detection of connected dosing units, graphical display of syringe size, syringe level and valve position, configurable SI units for volumes and flow rates, and real-time display of all current values like flow rate, syringe fill level or dispensed volume. | nemesys, user interface, syringe, system control software | Commercially available | SCR_014793 | nemesys UserInterface, nemesys User Interface | 2026-09-19 12:53:02 | 0 | ||||||||||
|
Hierarchical Clustering Resource Report Resource Website 1+ mentions |
Hierarchical Clustering (RRID:SCR_014673) | data analysis software, data processing software, software application, software resource, source code | R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method. | statistical analysis, statistical analysis package, r, r package, data analysis, software, cluster, hierarchical, dissimilarity, clustering method, metabolomics | is listed by: Metabolomics Workbench | Acknowledgement requested | SCR_014673 | R: Hierarchical Clustering, R - Hierarchical Clustering | 2026-09-19 12:53:00 | 4 | |||||||||
|
Zeitzeiger Resource Report Resource Website 10+ mentions |
Zeitzeiger (RRID:SCR_014791) | data acquisition software, data processing software, software application, software resource | R package for regularized supervised learning on high-dimensional data from an oscillatory system. Zeitzeiger can quantify rhythmic behavior, make accurate predictions, identify major patterns and important features, and detect when the oscillator is perturbed. | r, data acquisition software, rhythm, behavior, predict, oscillatory system, high dimensional data, regularized supervised learning | Available for download | SCR_014791 | ZeitZeiger | 2026-09-19 12:53:02 | 13 | ||||||||||
|
Principal Components Analysis Resource Report Resource Website 10+ mentions |
Principal Components Analysis (RRID:SCR_014676) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp. | statistical analysis, statistical analysis package, r, r package, principal component analysis, data matrix, prcomp, metabolomics | is listed by: Metabolomics Workbench | SCR_014676 | 2026-09-19 12:53:00 | 17 | |||||||||||
|
La Jolla Institute for Immunology Bioinformatics Core Facility Resource Report Resource Website |
La Jolla Institute for Immunology Bioinformatics Core Facility (RRID:SCR_014831) | access service resource, core facility, service resource | Core Facility provides support for short or long-term projects requiring expertise the analysis of biological datasets. The services provided include the analysis of large-scale datasets (e.g. next-gen sequencing data, microarrays, etc.), the development of customized databases and reusable analysis pipelines, guidance on experimental design, support with technical sections of manuscripts and grants, and training on analysis software packages. All services are charged at our hourly rate. | immunology, core facility, la jolla, bioinformatics, core facility, data analysis, pipeline development, technical, statistical, review, training | has parent organization: La Jolla Institute for Immunology | Available to external user | http://livesite.liai.org/pages/core_bioinformatics | SCR_014831 | , Institute for Immunology, La Jolla Institute; La Jolla Institute for Allergy and Immunology Bioinformatics Core;La Jolla Institute for Allergy and Immunology Bioinformatics Core Facility | 2026-09-19 12:53:02 | 0 | ||||||||
|
Linear Discriminant Analysis Resource Report Resource Website |
Linear Discriminant Analysis (RRID:SCR_014675) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function to perform linear discriminant analysis; specifically, to detect if the within-class covariance matrix is singular. | statistical analysis, statistical analysis package, r, r package, linear disciminant analysis, covariance, matrix, linear discriminant analysis, data analysis software, metabolomics | is listed by: Metabolomics Workbench | SCR_014675 | 2026-09-19 12:53:00 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
